Month: February 2005

Genetic characterization of European-Zebucomposite bovine using RFLP markers

Erica Perez Marson, José Bento Sterman Ferraz, Flávio Vieira Meirelles, Júlio César de Carvalho Balieiro, Joanir Pereira Eler, Luís Gustavo Girardi Figueiredo, Gerson Barreto MourãoPublished September 6, 2005Genet. Mol. Res. 4 (3): 496-505 (2005) About the AuthorsErica Perez Marson, José Bento Sterman Ferraz, Flávio Vieira Meirelles, Júlio César de Carvalho Balieiro, Joanir Pereira Eler, Luís […]

An integrated model for cellular analysis

Eduardo Battistella, José G.C. de Souza, Cláudia K. Barcellos, Ney Lemke and José C.M. MombachPublished September 30, 2005Genet. Mol. Res. 4 (3): 506-513 (2005) About the AuthorsEduardo Battistella, José G.C. de Souza, Cláudia K. Barcellos, Ney Lemke and José C.M. Mombach Corresponding authorJ.G.C. de SouzaEmail: jose@exatas.unisinos.br ABSTRACT  We present the MOlecular NETwork (MONET) ontology as […]

A framework based on Web service orchestration for bioinformatics workflow management

Luciano A. Digiampietri, Claudia B. Medeiros, João C. SetubalPublished September 30, 2005Genet. Mol. Res. 4 (3): 535-542 (2005) About the AuthorsLuciano A. Digiampietri, Claudia B. Medeiros, João C. Setubal Corresponding authorL.A. DigiampietriEmail: luciano@ic.unicamp.br ABSTRACT Bioinformatics activities are growing all over the world, with proliferation of data and tools. This brings new challenges: how to understand […]

Reconfigurable systems for sequence alignment and for general dynamic programming

Ricardo P. Jacobi, Mauricio Ayala-Rincón, Luis G.A. Carvalho, Carlos H. Llanos, Reiner W. HartensteinPublished September 30, 2005Genet. Mol. Res. 4 (3): 543-552 (2005) About the AuthorsRicardo P. Jacobi, Mauricio Ayala-Rincón, Luis G.A. Carvalho, Carlos H. Llanos, Reiner W. Hartenstein Corresponing authorR.P. JacobiEmail: rjacobi@cic.unb.br ABSTRACT Reconfigurable systolic arrays can be adapted to efficiently resolve a wide […]

Mutual information content of homologous DNA sequences

Helena Cristina G. Leitão, Luciana S. Pessôa, Jorge StolfiPublished September 30, 2005Genet. Mol. Res. 4 (3): 553-562 (2005) About the AuthorsHelena Cristina G. Leitão, Luciana S. Pessôa, Jorge Stolfi Corresponding authorH.C.G. LeitãoEmail: hcgl@ic.uff.br ABSTRACT The necessary information to reproduce and keep an organism is codified in acid nucleic molecules. Deepening the knowledge about how the […]

An I/O device driver for bioinformatics tools: the case for BLAST

Renato Campos Mauro, Sérgio LifschitzPublished September 30, 2005Genet. Mol. Res. 4 (3): 563-570 (2005) About the AuthorsRenato Campos Mauro, Sérgio Lifschitz Corresponding authorS. LifschitzEmail: sergio@inf.puc-rio.br ABSTRACT There are many bioinformatics tools that deal with input/ output (I/O) issues by using filing systems from the most common operating systems, such as Linux or MS Windows. However, […]

An agent-based system for re-annotation of genomes

Leonardo Vianna do Nascimento, Ana L.C. BazzanPublished September 30, 2005Genet. Mol. Res. 4 (3): 571-580 (2005) About the AuthorsLeonardo Vianna do Nascimento, Ana L.C. Bazzan Corresponding authorL.V. NascimentoEmail: lvnascimento@inf.ufrgs.br ABSTRACT Genome annotation projects can produce incorrect results if they are based on obsolete data or inappropriate models. We have developed an automatic re-annotation system that […]

Reconstruction of phylogenetic trees using the ant colony optimization paradigm

Mauricio Perretto, Heitor Silvério LopesPublished September 30, 2005Genet. Mol. Res. 4 (3): 581-589 (2005) About the AuthorsMauricio Perretto, Heitor Silvério Lopes Corresponding authorH.S. LopesEmail: hslopes@cpgei.cefetpr.br ABSTRACT We developed a new approach for the reconstruction of phylogenetic trees using ant colony optimization metaheuristics. A tree is constructed using a fully connected graph and the problem is […]

A distributed computation of Interpro Pfam,PROSITE and ProDom for protein annotation

Edward de O. Ribeiro, Gustavo G. Zerlotini, Irving R.M. Lopes, Victor B.R. Ribeiro, Alba C.M. Melo, Maria Emilia M.T. Walter, Marcos Mota Costa, BIOFOCO NetworkPublished September 30, 2005Genet. Mol. Res. 4 (3): 590-598 (2005) About the AuthorsEdward de O. Ribeiro, Gustavo G. Zerlotini, Irving R.M. Lopes, Victor B.R. Ribeiro, Alba C.M. Melo, Maria Emilia M.T. […]

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