Day: September 30, 2008

Testing the performance of automatedannotation of ESTs with the KeggOrthology (KO) database demonstrateslack of completeness of clusters

G.R. Fernandes, M.A. Mudado, J.M. OrtegaPublished September 30, 2008Genet. Mol. Res. 7 (3): 948-957 (2008) About the AuthorsG.R. Fernandes, M.A. Mudado, J.M. OrtegaCorresponding authorJ.M. OrtegaEmail: miguel@icb.ufmg.br AbstractThe KEGG Orthology (KO) database was tested as a source for automated annotation of expressed sequence tags (ESTs). We used a control experiment where every EST was assigned to […]

A procedure to recruit members to enlarge protein family databases – the building of UECOG (UniRef-Enriched COG Database) as a model

G.R. Fernandes, D.V.C. Barbosa, F. Prosdocimi, I.A. Pena, L. Santana-Santos, O. Coelho Junior, A. Barbosa-Silva, H.M. Velloso, M.A. Mudado, D.A. Natale, A.C. Faria-Campos, S.C.V. Aguiar, J.M. OrtegaPublished:September 30, 2008Genet. Mol. Res. 7 (3) : 910-924DOI: https://doi.org/10.4238/vol7-3x-meeting008 Cite this Article:G.R. Fernandes, D.V.C. Barbosa, F. Prosdocimi, I.A. Pena, L. Santana-Santos, C. Junior, A. Barbosa-Silva, H.M. Velloso, M.A. […]

Genes up- and down-regulated by dermcidin in breast cancer: a microarray analysis

D.F. Moreira, B.E. Strauss, E. Vannier, J.E. BelizárioPublished: September 30, 2008Genet. Mol. Res. 7 (3) : 925-932DOI: https://doi.org/10.4238/vol7-3x-meeting009 Cite this Article:D.F. Moreira, B.E. Strauss, E. Vannier, J.E. Belizário (2008). Genes up- and down-regulated by dermcidin in breast cancer: a microarray analysis. Genet. Mol. Res. 7(3): 925-932. https://doi.org/10.4238/vol7-3x-meeting009 About the AuthorsD.F. Moreira, B.E. Strauss, E. Vannier, […]

An algorithm to infer similarity among cell types and organisms by examining the most expressed sequences

S.A.P. Pinto, J.M. OrtegaPublished: September 30, 2008Genet. Mol. Res. 7 (3) : 933-947DOI: https://doi.org/10.4238/vol7-3x-meeting010 Cite this Article:S.A.P. Pinto, J.M. Ortega (2008). An algorithm to infer similarity among cell types and organisms by examining the most expressed sequences. Genet. Mol. Res. 7(3): 933-947. https://doi.org/10.4238/vol7-3x-meeting010 About the AuthorsS.A.P. Pinto, J.M. Ortega Corresponding AuthorJ.M. OrtegaEmail: miguel@icb.ufmg.br ABSTRACT Following […]

Testing the performance of automated annotation of ESTs with the Kegg Orthology (KO) database demonstrates lack of completeness of clusters

G.R. Fernandes, M.A. Mudado, J.M. OrtegaPublished: September 30, 2008Genet. Mol. Res. 7 (3) : 948-957DOI: https://doi.org/10.4238/vol7-3x-meeting011 Cite this Article:G.R. Fernandes, M.A. Mudado, J.M. Ortega (2008). Testing the performance of automated annotation of ESTs with the Kegg Orthology (KO) database demonstrates lack of completeness of clusters. Genet. Mol. Res. 7(3): 948-957. https://doi.org/10.4238/vol7-3x-meeting011 About the AuthorsG.R. Fernandes, […]

Heteroduplex formation and S1 digestion for mapping alternative splicing sites

E.N. Ferreira, M.C.R. Rangel, P.B. Pineda, D.O. Vidal, A.A. Camargo, S.J. Souza, D.M. CarraroPublished: September 30, 2008Genet. Mol. Res. 7 (3) : 958-969DOI: https://doi.org/10.4238/vol7-3x-meeting012 Cite this Article:E.N. Ferreira, M.C.R. Rangel, P.B. Pineda, D.O. Vidal, A.A. Camargo, S.J. Souza, D.M. Carraro (2008). Heteroduplex formation and S1 digestion for mapping alternative splicing sites. Genet. Mol. Res. 7(3): […]

Routine libraries for pattern recognition in quasispec

E.A. Marucci, G.F.D. Zafalon, A.C.G. Jardim, L.H.T. Yamasaki, C. Bittar, P. Rahal, J.M. MachadoPublished: September 30, 2008Genet. Mol. Res. 7 (3) : 970-981DOI: https://doi.org/10.4238/vol7-3x-meeting013 Cite this Article:E.A. Marucci, G.F.D. Zafalon, A.C.G. Jardim, L.H.T. Yamasaki, C. Bittar, P. Rahal, J.M. Machado (2008). Routine libraries for pattern recognition in quasispecies. Genet. Mol. Res. 7(3): 970-981. https://doi.org/10.4238/vol7-3x-meeting013 About […]

ChromaPipe: a pipeline for analysis, quality control and management for a DNA sequencing facility

T.D. Otto, E.A. Vasconcellos, L.H.F. Gomes, A.S. Moreira, W.M. Degrave, L. Mendonça-Lima, M.Alves-FerreiraPublished: September 23, 2008Genet. Mol. Res. 7 (3) : 861-871DOI: https://doi.org/10.4238/vol7-3x-meeting04 Cite this Article:T.D. Otto, E.A. Vasconcellos, L.H.F. Gomes, A.S. Moreira, W.M. Degrave, L. Mendonça-Lima, M. Alves-Ferreira (2008). ChromaPipe: a pipeline for analysis, quality control and management for a DNA sequencing facility. Genet. […]

In silico reconstruction of the amino acid metabolic pathways of Trypanosoma cruzi

A.C.R. Guimarães, T.D. Otto, M. Alves-Ferreira, A.B. Miranda, W.M. DegravePublished: September 23, 2008Genet. Mol. Res. 7 (3) : 872-882DOI: https://doi.org/10.4238/vol7-3x-meeting05 Cite this ArticleA.C.R. Guimarães, T.D. Otto, M. Alves-Ferreira, A.B. Miranda, W.M. Degrave (2008). In silico reconstruction of the amino acid metabolic pathways of Trypanosoma cruzi. Genet. Mol. Res. 7(3): 872-882. https://doi.org/10.4238/vol7-3x-meeting05 About the AuthorsA.C.R. Guimarães, […]

A simple and efficient method for predicting protein-protein interaction sites

R.H. Higa, C.L. TozziPublished: September 23, 2008Genet. Mol. Res. 7 (3) : 898-909DOI: https://doi.org/10.4238/vol7-3x-meeting07 Cite this Article:R.H. Higa, C.L. Tozzi (2008). A simple and efficient method for predicting protein-protein interaction sites. Genet. Mol. Res. 7(3): 898-909. https://doi.org/10.4238/vol7-3x-meeting07 About the AuthorsR.H. Higa, C.L. Tozzi Corresponding AuthorR.H. HigaEmail: roberto@cnptia.embrapa.br ABSTRACT Computational methods for predicting protein-protein interaction sites […]

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