G.R. Fernandes, M.A. Mudado, J.M. OrtegaPublished September 30, 2008Genet. Mol. Res. 7 (3): 948-957 (2008) About the AuthorsG.R. Fernandes, M.A. Mudado, J.M. OrtegaCorresponding authorJ.M. OrtegaEmail: miguel@icb.ufmg.br AbstractThe KEGG Orthology (KO) database was tested as a source for automated annotation of expressed sequence tags (ESTs). We used a control experiment where every EST was assigned to […]
A procedure to recruit members to enlarge protein family databases – the building of UECOG (UniRef-Enriched COG Database) as a model
G.R. Fernandes, D.V.C. Barbosa, F. Prosdocimi, I.A. Pena, L. Santana-Santos, O. Coelho Junior, A. Barbosa-Silva, H.M. Velloso, M.A. Mudado, D.A. Natale, A.C. Faria-Campos, S.C.V. Aguiar, J.M. OrtegaPublished:September 30, 2008Genet. Mol. Res. 7 (3) : 910-924DOI: https://doi.org/10.4238/vol7-3x-meeting008 Cite this Article:G.R. Fernandes, D.V.C. Barbosa, F. Prosdocimi, I.A. Pena, L. Santana-Santos, C. Junior, A. Barbosa-Silva, H.M. Velloso, M.A. […]
Genes up- and down-regulated by dermcidin in breast cancer: a microarray analysis
D.F. Moreira, B.E. Strauss, E. Vannier, J.E. BelizárioPublished: September 30, 2008Genet. Mol. Res. 7 (3) : 925-932DOI: https://doi.org/10.4238/vol7-3x-meeting009 Cite this Article:D.F. Moreira, B.E. Strauss, E. Vannier, J.E. Belizário (2008). Genes up- and down-regulated by dermcidin in breast cancer: a microarray analysis. Genet. Mol. Res. 7(3): 925-932. https://doi.org/10.4238/vol7-3x-meeting009 About the AuthorsD.F. Moreira, B.E. Strauss, E. Vannier, […]
An algorithm to infer similarity among cell types and organisms by examining the most expressed sequences
S.A.P. Pinto, J.M. OrtegaPublished: September 30, 2008Genet. Mol. Res. 7 (3) : 933-947DOI: https://doi.org/10.4238/vol7-3x-meeting010 Cite this Article:S.A.P. Pinto, J.M. Ortega (2008). An algorithm to infer similarity among cell types and organisms by examining the most expressed sequences. Genet. Mol. Res. 7(3): 933-947. https://doi.org/10.4238/vol7-3x-meeting010 About the AuthorsS.A.P. Pinto, J.M. Ortega Corresponding AuthorJ.M. OrtegaEmail: miguel@icb.ufmg.br ABSTRACT Following […]
Testing the performance of automated annotation of ESTs with the Kegg Orthology (KO) database demonstrates lack of completeness of clusters
G.R. Fernandes, M.A. Mudado, J.M. OrtegaPublished: September 30, 2008Genet. Mol. Res. 7 (3) : 948-957DOI: https://doi.org/10.4238/vol7-3x-meeting011 Cite this Article:G.R. Fernandes, M.A. Mudado, J.M. Ortega (2008). Testing the performance of automated annotation of ESTs with the Kegg Orthology (KO) database demonstrates lack of completeness of clusters. Genet. Mol. Res. 7(3): 948-957. https://doi.org/10.4238/vol7-3x-meeting011 About the AuthorsG.R. Fernandes, […]
Heteroduplex formation and S1 digestion for mapping alternative splicing sites
E.N. Ferreira, M.C.R. Rangel, P.B. Pineda, D.O. Vidal, A.A. Camargo, S.J. Souza, D.M. CarraroPublished: September 30, 2008Genet. Mol. Res. 7 (3) : 958-969DOI: https://doi.org/10.4238/vol7-3x-meeting012 Cite this Article:E.N. Ferreira, M.C.R. Rangel, P.B. Pineda, D.O. Vidal, A.A. Camargo, S.J. Souza, D.M. Carraro (2008). Heteroduplex formation and S1 digestion for mapping alternative splicing sites. Genet. Mol. Res. 7(3): […]
Routine libraries for pattern recognition in quasispec
E.A. Marucci, G.F.D. Zafalon, A.C.G. Jardim, L.H.T. Yamasaki, C. Bittar, P. Rahal, J.M. MachadoPublished: September 30, 2008Genet. Mol. Res. 7 (3) : 970-981DOI: https://doi.org/10.4238/vol7-3x-meeting013 Cite this Article:E.A. Marucci, G.F.D. Zafalon, A.C.G. Jardim, L.H.T. Yamasaki, C. Bittar, P. Rahal, J.M. Machado (2008). Routine libraries for pattern recognition in quasispecies. Genet. Mol. Res. 7(3): 970-981. https://doi.org/10.4238/vol7-3x-meeting013 About […]
ChromaPipe: a pipeline for analysis, quality control and management for a DNA sequencing facility
T.D. Otto, E.A. Vasconcellos, L.H.F. Gomes, A.S. Moreira, W.M. Degrave, L. Mendonça-Lima, M.Alves-FerreiraPublished: September 23, 2008Genet. Mol. Res. 7 (3) : 861-871DOI: https://doi.org/10.4238/vol7-3x-meeting04 Cite this Article:T.D. Otto, E.A. Vasconcellos, L.H.F. Gomes, A.S. Moreira, W.M. Degrave, L. Mendonça-Lima, M. Alves-Ferreira (2008). ChromaPipe: a pipeline for analysis, quality control and management for a DNA sequencing facility. Genet. […]
In silico reconstruction of the amino acid metabolic pathways of Trypanosoma cruzi
A.C.R. Guimarães, T.D. Otto, M. Alves-Ferreira, A.B. Miranda, W.M. DegravePublished: September 23, 2008Genet. Mol. Res. 7 (3) : 872-882DOI: https://doi.org/10.4238/vol7-3x-meeting05 Cite this ArticleA.C.R. Guimarães, T.D. Otto, M. Alves-Ferreira, A.B. Miranda, W.M. Degrave (2008). In silico reconstruction of the amino acid metabolic pathways of Trypanosoma cruzi. Genet. Mol. Res. 7(3): 872-882. https://doi.org/10.4238/vol7-3x-meeting05 About the AuthorsA.C.R. Guimarães, […]
A simple and efficient method for predicting protein-protein interaction sites
R.H. Higa, C.L. TozziPublished: September 23, 2008Genet. Mol. Res. 7 (3) : 898-909DOI: https://doi.org/10.4238/vol7-3x-meeting07 Cite this Article:R.H. Higa, C.L. Tozzi (2008). A simple and efficient method for predicting protein-protein interaction sites. Genet. Mol. Res. 7(3): 898-909. https://doi.org/10.4238/vol7-3x-meeting07 About the AuthorsR.H. Higa, C.L. Tozzi Corresponding AuthorR.H. HigaEmail: roberto@cnptia.embrapa.br ABSTRACT Computational methods for predicting protein-protein interaction sites […]