Research Article

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11/19/2015
Codon usage; Mitochondrial genome; Myotis muricola; Nepalese whiskered bat; Vespertilionidae

We sequenced and characterized the complete mitogenome of the Nepalese whiskered bat Myotis muricola (Vespertilionidae) to provide more data for comparative mitogenomics and codon usage in the genus Myotis (Vespertilionidae). The mitogenome of M. muricola is a circular molecule of 17,224 bp, consisting of a control region and a conserved set of 37 genes ... more

K.B. Yoon; Y.C. Park
05/13/2016
Intraspecific variation; Mitochondrial genome; Phylogeny; Shorthead catfish

The complete 16,532-nucleotide sequence of the mitochondrial genome of the shorthead catfish (Pelteobagrus eupogon) was determined using the long and accurate polymerase chain reaction method, and compared with the mitochondrial genome sequences of 49 other catfish species belonging to the order Siluriformes. The locations of protein-coding genes and ribosomal ribonucleic acids ... more

R.Q. Wang; D.Z. Wang; C.T. Li; X.R. Yang; R.Q. Wang; D.Z. Wang; C.T. Li; X.R. Yang
12/31/2019
Genetic diversity; Germplasm; Lima bean; Microsatellite; Phaseolus lunatus; Structure

The lima bean (Phaseolus lunatus) has been cultivated in Brazil since pre-colonization times and remains an important source of food and income for small farmers. Nevertheless, the species has not been extensively studied in this country. We assessed the genetic diversity of 183 lima bean landraces collected from different regions of Brazil, maintained by ... more

R.N.O. Silva; A.C.A. Lopes; R.L.F. Gomes; J.G. Pádua; M.L. Burle
08/07/2015
Chinese Hwamei; Garrulax canorus; Leiothrichidae; Mitochondrial genome; Passeriformes

The Chinese Hwamei Garrulax canorus, a member of the family Leiothrichidae, is commonly found in central and southern China, northern Indochina, and on Hainan Island. In this study, we sequenced the complete mitochondrial genome of G. canorus. The circular mitochondrial genome is 17,785 bp in length and includes 13 protein-coding genes, 22 transfer RNA (tRNA) genes, and ... more

D.S. Chen; C.J. Qian; Q.Q. Ren; P. Wang; J. Yuan; L. Jiang; D. Bi; Q. Zhang; Y. Wang; X.Z. Kan
05/31/2021
Candida albicans; Mitochondrial complex I; Mitochondrial genome; Saccharomyces cerevisiae; Yeast evolution

Evolution of mitochondrial genomes is essential for the adaptation of yeasts to changes in environmental oxygen levels. Although Saccharomyces cerevisiae mitochondrial DNA lacks all complex I genes, respiration is possible because alternative NADH dehydrogenases are encoded by NDE1 and NDI1 nuclear genes. The apparent whole genome ... more

L.R. Lopes; R.C. Ferreira; F. Antoneli; P.B. Paiva; M.R.S. Briones
09/21/2015
Bayesian analysis; Phylogeny; Species group; Streptococcus

Alternative phylogenies for the genus Streptococcus have been proposed due to uncertainty about the among-species group relationships. Here, we performed a phylogenetic analysis of the genus Streptococcus, considering all the species groups and also the genomic data accumulated by other studies. Seventy-five species were subjected to a Bayesian phylogenetic analysis ... more

F. Póntigo; M. Moraga; S.V. Flores
08/21/2015
Biological evolution; Gossypium raimondii; Phylogeny; Sequence analysis; Synteny; TIFY gene family

The highly conserved TIFY domain is included in the TIFY protein family of transcription factors, which is important in plant development. Here, 28 TIFY family genes were identified in the Gossypium raimondii genome and classified into JAZ (15 genes), ZML (8), PPD (3), and TIFY (2). The normal (TIF[F/Y]XG) motif was dominant in the TIFY ... more

D.H. He; Z.P. Lei; B.S. Tang; H.Y. Xing; J.X. Zhao; Y.L. Jing
07/31/2015
morphology; Phylogeny; Salix matsudana; Species concept

The morphological species concept is based on morpho­logical traits, which are often subject to subjectivity or artifact. Molecular evidence is needed to test the reliability of morphological classification of taxa that are controversial and to provide appropriate taxonomic de­limitation. In this study, we used 15 single-copy nuclear loci and 2 chlo­roplast fragments to verify the ... more

S.H. Du; Z.S. Wang; Y.X. Li; D.S. Wang; J.G. Zhang
12/29/2015
Expression profile; GRAS; Jatropha curcas L.; Phylogeny; Physic nut

GRAS proteins play vital roles in plant growth and development. Physic nut (Jatropha curcas L.) was found to have a total of 48 GRAS family members (JcGRAS), 15 more than those found in Arabidopsis. The JcGRAS genes were divided into 12 subfamilies or 15 ancient monophyletic lineages based on the phylogenetic analysis of GRAS proteins from both flowering and ... more

Z.Y. Wu; P.Z. Wu; Y.P. Chen; M.R. Li; G.J. Wu; H.W. Jiang
12/29/2015
Microbiome; Mitis group; Phylogeny; RecN; Streptococcus massiliensis

Streptococcus is a diverse bacterial lineage. Species of this genus occupy a myriad of environments inside humans and other animals. Despite the elucidation of several of these habitats, many remain to be identified. Here, we explore a methodological approach to reveal unknown bacterial environments. Specifically, we inferred the phylogeny of the Mitis group by analyzing the ... more

F. Póntigo; C. Silva; M. Moraga; S.V. Flores

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