Research Article

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Acipenser schrenckii; Ovaries; Reproduction; Testes; Transcriptome

Sturgeons (Acipenser schrenckii) are of high evolutionary, economic, and conservation value, and caviar isone of the most valuable animal food products in the world. The Illumina HiSeq2000 sequencing platform was used to construct testicular and ovarian transcriptomes to identify genes involved in reproduction and sex determination in A. schrenckii. A total of 122,381 ... more

S.B. Jin; Y. Zhang; X.L. Dong; Q.K. Xi; D. Song; H.T. Fu; D.J. Sun
Cocoa tea; Theobromine biosynthesis; Trans-catechins biosynthesis; Transcriptome

Camellia ptilophylla, or cocoa tea, is naturally decaffeinated and its predominant catechins and purine alkaloids are trans-catechins and theobromine Regular tea [Camellia sinensis (L.) O. Ktze.] is evolutionarily close to cocoa tea and produces cis-catechins and caffeine. Here, the transcriptome of C. ptilophylla was sequenced using the 101- ... more

M.M. Li; J.Y. Xue; Y.L. Wen; H.S. Guo; X.Q. Sun; Y.M. Zhang; Y.Y. Hang
Alkalinity stress; Carbonate; Nile tilapia; Transcriptome

To identify genes of potential importance to alkalinity tolerance, RNA sequencing (RNA-Seq) was performed to survey gill transcriptome profiles from freshwater (FW) and alkaline water (AW) exposed Nile tilapia (Oreochromis niloticus). A total of 22,724,036 (AW)/16,461,040 (FW) single-end reads were generated in which 20,304,348 (AW)/14,681,290 (FW) reads (90.0/89.72%) were ... more

Y. Zhao; J. Wang; J. Thammaratsuntorn; J.W. Wu; J.H. Wei; Y. Wang; J.W. Xu; J.L. Zhao
Laying; Pituitary gland; Prelaying; Sichuan white geese; Transcriptome

To better understand the molecular mechanism(s) underlying egg-laying in Sichuan white geese, the profiles of genes in the pituitary gland were investigated during the prelaying and laying periods. Total RNA was extracted from the pituitary glands of geese during prelaying or laying periods and cDNA was generated. After sequencing and annotation, 54 upregulated and 84 downregulated genes were ... more

G.L. Gao; X.Z. Zhao; Q. Li; J. Su; Q.G. Wang
Anthocyanin; Red leaf lettuce; Simple sequence repeat; Transcriptome

This study aimed to analyze the transcriptome profile of red lettuce and identify the genes involved in anthocyanin accumulation. Red leaf lettuce is a popular vegetable and popular due to its high anthocyanin content. However, there is limited information available about the genes involved in anthocyanin biosynthesis in this species. In this study, transcriptomes of 15-day-old seedlings ... more

Y.Z. Zhang; S.Z. Xu; Y.W. Cheng; H.Y. Ya; J.M. Han; Y.Z. Zhang; S.Z. Xu; Y.W. Cheng; H.Y. Ya; J.M. Han; Y.Z. Zhang; S.Z. Xu; Y.W. Cheng; H.Y. Ya; J.M. Han
Assembly; Blue fox; Transcriptome

The blue fox (Alopex lagopus), a coat-color variant of the Arctic fox, is a domesticated fur-bearing mammal. In the present study, transcriptome data generated from a pool of nine different tissues were obtained with Illumina HiSeq2500 paired-end sequencing technology. After filtering from raw reads, 32,358,290 clean reads were assembled into 161,269 transcripts and 97,252 ... more

P.C. Guo; S.Q. Yan; S. Si; C.Y. Bai; Y. Zhao; Y. Zhang; J.Y. Yao; Y.M. Li; P.C. Guo; S.Q. Yan; S. Si; C.Y. Bai; Y. Zhao; Y. Zhang; J.Y. Yao; Y.M. Li; P.C. Guo; S.Q. Yan; S. Si; C.Y. Bai; Y. Zhao; Y. Zhang; J.Y. Yao; Y.M. Li
Circadian clock; Circadian rhythm; Lunar-related cycles; Transcriptome

Marine animals exhibit a variety of biological rhythms, such as solar and lunar-related cycles; however, our current molecular understanding of biological rhythms in marine animals is quite limited. Identifying and understanding the expression patterns of clock genes from available transcriptomes will help elucidate biological rhythms ... more

X.J. Sun; L.Q. Zhou; J.T. Tian; Z.H. Liu; B. Wu; Y.H. Dong; A.G. Yang; W.M. Ma
2016 Dec 23
Fruit; Gene expression profiling; Gene Expression Regulation, Plant; Mutation; Prunus persica; Transcriptome

Fruit ripening is a complex developmental process, the details of which remain largely unknown in fleshy fruits. In this paper, the fruit flesh of two peach varieties, "Zhongyou9" (a nectarine; Prunus persica L. Batsch) and its mutant "Hongyu", was analyzed by RNA-seq technology during two stages of ripening at 20-day intervals. One hundred and eighty significant upregulated and two hundred ... more

H.F. Pan; Y. Sheng; Z.H. Gao; H.L. Chen; Y.J. Qi; X.K. Yi; G.H. Qin; J.Y. Zhang
2017 Mar 15
Animals; Breeding; Cells, Cultured; Female; Gene expression profiling; Gene Expression Regulation; Goats; Oocytes; Oogenesis; Single-Cell Analysis; Transcriptome

Juvenile in vitro embryo transfer is an important animal reproductive technology that can shorten the generation interval of livestock, explore the reproductive potential of dams with excellent genetic traits, accelerate genetic progress and production efficiency of the herd, and provide a wealth of genetic resources for livestock breeding. However, oocytes from kids do not develop as well as ... more

X.Y. Yin; G.H. Cheng; H.Y. Guo; Q. Wang; Y.J. Li; H. Zhang
2017 Mar 22
Animals; Aphids; Biological evolution; Genetic variation; Hemiptera; Parthenogenesis; Photoperiod; Reproduction, Asexual; RNA; Transcriptome

Chinese galls form on sumac plants (Rhus chinensis) and are used for medicinal and chemical purposes, due to their richness in tannins. The galls are formed by aphids, the most prominent of which is Schlechtendalia chinensis, which forms horn-shaped galls on the winged rachis of R. chinensis. S. chinensis has a complex life cycle, including both R. chinensis and certain mosses as hosts, as ... more

P. Liu; Z.X. Yang; X.M. Chen; P. Yang