Research Article

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P.F. de Aquino; P.C. Carvalho; J.Sda Gama Fischer; A.Q.L. de Souza; J.S. Viana; S.R.S. Chalub; A.D.L. de Souza; M.G.C. Carvalho
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Genetic identity; Polymerase chain reaction; Simple sequence repeat; Sugarcane

Red rod is an economically important disease of sugarcane caused by the fungus Colletotrichum falcatum. We used a simple sequence repeat (SSR)-based marker system to identify and analyze genetic relationships of red rot resistant and susceptible sugarcane cultivars grown in Pakistan. Twenty-one highly polymorphic SSR markers were used for DNA fingerprinting and genetic diversity ... more

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Human papillomavirus; Polymerase chain reaction; Risk factors; Uterine cervical neoplasms

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DNA isolation; Polymerase chain reaction; Protocol

Molecular markers are important for characterizing the genetic diversity of plants and can provide the basis for strategies to protect and conserve endangered populations. However, numerous molecular techniques are used, requiring an evaluation of fast and efficient methods to extract DNA. Since molecular studies of Caesalpinia ferrea are rare, it is important to develop and/or ... more

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Leaves of Malus sieversii, Vitis vinifera, and Armeniaca vulgaris contain substantial amounts of secondary metabolites, which limit the high-quality DNA extraction performance. In this study, five extraction protocols were compared for their ability to produce good quality DNA from fresh and dried (with silica gel) leaves of these species. The modified protocol ... more

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Genotyping is a critical step for molecular marker-assisted selection in rice. Rice genomic DNA samples for genotyping are typically isolated from living tissues such as seedlings. This requires the germination of all candidate seeds and extraction of DNA from the seedlings. Currently, an ideal individual is selected from a very large number of plants, which is time- and labor-consuming ... more

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Cut-and-paste-based cloning strategy; p150Glued; Polymerase chain reaction; Site-directed mutagenesis

Site-directed mutagenesis is an essential technique for investigating the mechanisms of gene regulation on a molecular level, as well as for exploring post-translational modifications and functional structure at the protein level. Polymerase chain reaction combining in vitro synthesis of oligonucleotide primers allows for site-directed mutation to be performed with ease. However, site-directed ... more

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The demand for molecular analysis of aquatic microbial communities in freshwater has highlighted the need for efficient methods of DNA extraction. The centrifugation method and filtration-membrane method are 2 widely used methods for extracting DNA. The objective of this study was to compare the extraction efficiency of 3 methods, including the centrifugation method, filtration-membrane ... more

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25S rDNA-PCR; Candida albicans; Polymerase chain reaction; Random amplified polymorphic DNA

We analyzed the distribution of Candida albicans in the oral cavity of 3-5-year-old children of Uygur and Han nationalities as well as their genotypes in caries-active groups in the Urumqi municipality. CHROMagar Candida was separately cultivated, and we identified 359 Uygur and Han children aged 3-5 years. We randomly selected 20 Han children and 20 Uygur children for this ... more

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Arachis hypogaea; Biological nitrogen fixation; Drought tolerance; ERF8 and NCED genes

The peanut plant has high plasticity and great adaptability to adverse conditions, including drought. To mitigate the negative effects of drought on legumes, nitrogen-fixing microorganisms have been investigated in some plant species, such as soybeans and beans. We analyzed the role Bradyrhizobium strains in peanut genotypes subjected to water deficit by ... more

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