Research Article

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10/17/2016
Chloroplast genome; Complete sequences; Morus atropurpurea; Morus multicaulis; Phylogeny

The complete chloroplast genome (cpDNA) sequences of two cultivated species of Morus L. (Morus atropurpurea and Morus multicaulis) are reported and reconstructed in this study, and were compared with that of wild Morus mongolica. In M. atropurpurea, the circular genome is 159,113 bp in size and comprises two identical ... more

Q.L. Li; J.Z. Guo; N. Yan; C.C. Li
01/24/2014
Chloroplast genome; maternal inheritance; Saccharum spontaneum; Sugarcane

A striking characteristic of modern sugarcane is that all sugarcane cultivars (Saccharum spp) share a common cytoplasm from S. officinarum. To explore the potential value of S. spontaneum cytoplasm, new Saccharum hybrids with an S. spontaneum cytoplasm were developed at the United States Department of Agriculture-Agricultural Research Service, ... more

J.R. Zhu; H. Zhou; Y.B. Pan; X. Lu
07/13/2015
Chloroplast genome; Genetic diversity; Ginkgo biloba; Microsatellites

Ginkgo biloba is considered to be a living fossil that can be used to understand the ancient evolutionary history of gymnosperms, but little attention has been given to the study of its population genetics, molecular phylogeography, and genetic resources assessment. Chloro­plast simple sequence repeat (cpSSR) markers are powerful tools for genetic studies of plants. In this study ... more

M. Xu; L.A. Xu; F.L. Cao; H.J. Zhang; F.X. Yu
11/23/2015
Chloroplast genome; Conserved sequence; Phylogenetic analysis; species identification; Universal primer; Variable sequence

Variation in the chloroplast DNA sequence is useful for plant phylogenetic studies. However, the number of variable sequences provided by chloroplast DNA for suggested genes or genomic regions in plant phylogenetic analyses is often inadequate. To identify conserved regions that can be used to design primers and amplify variable sequences for use in plant phylogenetic studies, the ... more

Y.C. Yang; T.L. Kung; C.Y. Hu; S.F. Lin
10/21/2017
Chloroplast genome; Correa carmen; exploitation; Illumina sequencing
Correa carmen is considered important because of its
considerable ornamental and economic value. The most striking
characteristic of C. carmen flowers is their long winter-flowering
period. In the present study, we generated the first complete C.
carmen chloroplast genome sequence based on Illumina paired-end
sequencing data. The entire ... more
M. Chen; Y. Zong; S. Cheng; Z. Zhang
04/25/2016
East Asia; nrDNA ITS; Oenanthe; Taxonomy; Water dropwort

Oenanthe L. is a taxonomically complex genus, several species of which have long been used as vegetables and traditional medicines in East Asia. In order to clarify the taxonomic status of Oenanthe accessions and provide baseline data for the sustainable use of its genetic resources, we examined sequence variations in the internal transcribed spacer (ITS) region of ... more

S. Fu; L.N. Li; Z.C. Long; W.D. Ke; A.H. Ye; Y.H. Guo; J.M. Chen; S. Fu; L.N. Li; Z.C. Long; W.D. Ke; A.H. Ye; Y.H. Guo; J.M. Chen; S. Fu; L.N. Li; Z.C. Long; W.D. Ke; A.H. Ye; Y.H. Guo; J.M. Chen
09/21/2015
Bayesian analysis; Phylogeny; Species group; Streptococcus

Alternative phylogenies for the genus Streptococcus have been proposed due to uncertainty about the among-species group relationships. Here, we performed a phylogenetic analysis of the genus Streptococcus, considering all the species groups and also the genomic data accumulated by other studies. Seventy-five species were subjected to a Bayesian phylogenetic analysis ... more

F. Póntigo; M. Moraga; S.V. Flores
08/21/2015
Biological evolution; Gossypium raimondii; Phylogeny; Sequence analysis; Synteny; TIFY gene family

The highly conserved TIFY domain is included in the TIFY protein family of transcription factors, which is important in plant development. Here, 28 TIFY family genes were identified in the Gossypium raimondii genome and classified into JAZ (15 genes), ZML (8), PPD (3), and TIFY (2). The normal (TIF[F/Y]XG) motif was dominant in the TIFY ... more

D.H. He; Z.P. Lei; B.S. Tang; H.Y. Xing; J.X. Zhao; Y.L. Jing
07/31/2015
morphology; Phylogeny; Salix matsudana; Species concept

The morphological species concept is based on morpho­logical traits, which are often subject to subjectivity or artifact. Molecular evidence is needed to test the reliability of morphological classification of taxa that are controversial and to provide appropriate taxonomic de­limitation. In this study, we used 15 single-copy nuclear loci and 2 chlo­roplast fragments to verify the ... more

S.H. Du; Z.S. Wang; Y.X. Li; D.S. Wang; J.G. Zhang
12/29/2015
Expression profile; GRAS; Jatropha curcas L.; Phylogeny; Physic nut

GRAS proteins play vital roles in plant growth and development. Physic nut (Jatropha curcas L.) was found to have a total of 48 GRAS family members (JcGRAS), 15 more than those found in Arabidopsis. The JcGRAS genes were divided into 12 subfamilies or 15 ancient monophyletic lineages based on the phylogenetic analysis of GRAS proteins from both flowering and ... more

Z.Y. Wu; P.Z. Wu; Y.P. Chen; M.R. Li; G.J. Wu; H.W. Jiang

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