Research Article

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Bioinformatics; Biotechnology; Brazil; Genomics; Microbial genome project; Prokaryotes

Since the Haemophilus influenzae genome sequence was completed in 1995, 172 other prokaryotic genomes have been completely sequenced, while 508 projects are underway. Besides pathogens, organisms important in several other fields, such as biotechnology and bioremediation, have also been sequenced. Institutions choose the organisms they wish to sequence according to the ... more

P.Borges San Celestino; L.Rodrigues de Carvalho; L.Martins de Freitas; N.Florêncio Martins; L.Gustavo Ca Pacheco; A. Miyoshi; V. Azevedo; F.Alves Dorella
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Chicken; EST; Gallus gallus; Genomics; Microsatellites; SSR

Many years of domestication and breeding have given rise to the wide range of chicken breeds that exist today; however, an increasing number of local chicken breeds are under threat of extinction. A comprehensive characterization of chicken markers (especially type I markers) is needed to monitor and conserve genetic diversity in this species. The explosion of genomics and functional ... more

M.R. Bakhtiarizadeh; B. Arefnejad; E. Ebrahimie; M. Ebrahimi
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Drug target; Gene medicine; Genomics; Proteomics

Gene medicine is making breakthroughs in health questions that have baffled humanity for centuries. To understand and utilize gene medicine, it is necessary to realize its action against targets at the molecular level. Currently, many methods can be used to discover drug targets; among these, genomic and proteomic methods are the two most important. In this study, we introduced how to ... more

H.M. Zhang; Z.R. Nan; G.Q. Hui; X.H. Liu; Y. Sun
12/30/2004
Bioinformatics; Genetic determinism; Genomics; Human genome; Public understand of science; Science and technology studies

The literature about genomics and bioinformatics achievements in high-impact journals such as Nature and Science has raised disproportionate expectations amongst the general public about fast and revolutionary drugs and breakthroughs in biomedicine. However, the yield obtained by database mining activities has been modest, as reported in the February 2001 issues of ... more

M. Leite
10/03/2011
Association analysis; Candidate gene; Chicken; Egg number at 300 days of age; Polymorphism; QTL

We looked for variations that could be associated with chicken egg number at 300 days of age (EN300) in seven genes of the hypothalamic-pituitary-gonadal axis, including gonadotrophin-releasing hormone-I (GnRH-I), GnRH receptor (GnRHR), neuropeptide Y (NPY), dopamine D2 receptor (DRD2), vasoactive intestinal polypeptide (VIP), VIP receptor-1 ( ... more

H.P. Xu; H. Zeng; D.X. Zhang; X.L. Jia; C.L. Luo; M.X. Fang; Q.H. Nie; X.Q. Zhang
10/19/2010
Beef cattle; Marker assisted selection; QTL; SNP; Zebu

We analyzed the polymorphisms TFAM HaeIII, TFAM MboI and FABP4 MspA1I in three Nellore lines selected for growth in order to evaluate how selection affects the frequencies of these polymorphisms and evaluate their association with growth and carcass traits in Zebu cattle. Birth, weaning and yearling weights, rump height, longissimus muscle area, backfat ... more

D.R. Ayres; F.R.P. Souza; M.E.Z. Mercadante; L.F.S. Fonseca; H. Tonhati; J.N.S.G. Cyrillo; S.F.M. Bonilha; L.G. Albuquerque
11/26/2013
Alcohol preference; Atf2; Candidate; Gene expression; QTL

In prior work, congenic strains carrying the DBA/2Igb (D2) region of chromosome 2 (Chr2) for alcohol preference were bred onto a C57BL/6Ibg (B6) background and as predicted were found to reduce voluntary consumption. Subsequently, interval-specific congenic recombinant strains (ISCRS) were generated and also tested. These ISCRS strains reduced the quantitative trait loci (QTL) interval to ... more

L.S. Wang; Y. Jiao; Y. Huang; X.Y. Liu; G. Gibson; B. Bennett; K.M. Hamre; D.W. Li; H.Y. Zhao; J. Gelernter; H.R. Kranzler; L.A. Farrer; L. Lu; Y.J. Wang; W.K. Gu
11/18/2013
1000-grain weight; NIL; qsgw7; QTL; Rice

The genetic control of grain weight (GW) remains poorly understood. Quantitative trait loci (QTLs) determining the GW of rice were identified using a natural GW mutant, sgw. Using a segregating population derived from sgw (low GW) and cultivar 9311 ('9311'; indica, high GW), the chromosome segment associated with GW was detected on the short arm of chromosome 7. To validate and further ... more

J.M. Bian; H.H. He; C.J. Li; H. Shi; C.L. Zhu; X.S. Peng; J.R. Fu; X.P. He; X.R. Chen; L.F. Hu; L.J. Ouyang
02/28/2013
Ear leaf; Maize; Nitrogen regime; QTL; Recombinant inbred line

The ear leaf is one of the most important leaves in maize (Zea mays); it affects plant morphology and yield. To better understand its genetic basis, we examined ear leaf length, ear leaf width, and ear leaf area for quantitative trait locus (QTL) mapping in a recombinant inbred line population under two nitrogen regimes. Nine QTLs, on chromosomes 1 (one), 2 (one), 3 (one), 4 ( ... more

Z.P. Zheng; X.H. Liu
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Consensus map; Humid; QTL; Quality; Rain-fed agriculture; Wheat

Humid rain-fed agriculture is a special environment for wheat (Triticum aestivum) culture that tends to negatively affect wheat yield and quality. To identify quality characters of wheat in a humid environment, we conducted quality analysis and quantitative trait loci (QTL) detection in a recombinant inbred line whose parent had a high level of quality for several years. We found ... more

H.M. Li; Z.X. Tang; H.Q. Zhang; B.J. Yan; Z.L. Ren

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