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2013
V. S. Ferreira, Aguiar, C. M. L., Oliveira, E. J. F., Costa, M. A., Santos, G. M. M., and Silva, J. G., Mitochondrial DNA variability in populations of Centris aenea (Hymenoptera, Apidae), a crop-pollinating bee in Brazil, vol. 12, pp. 830-837, 2013.
Aguiar CML and Garófalo CA (2004). Nesting biology of Centris (Hemisiella) tarsata Smith (Hymenoptera, Apidae, Centridini). Rev. Bras. Zool. 21: 477-486. http://dx.doi.org/10.1590/S0101-81752004000300009   Aguiar CML, Garófalo CA and Almeida GF (2006). Biologia de nidificação de Centris (Hemisiella) trigonoides Lepeletier (Hymenoptera, Apidae, Centridini). Rev. Bras. Zool. 23: 323-330. http://dx.doi.org/10.1590/S0101-81752006000200003   Bandelt HJ, Forster P and Röhl A (1999). Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 16: 37-48. http://dx.doi.org/10.1093/oxfordjournals.molbev.a026036 PMid:10331250   Berti-Boti J (2001). Polinização Entomófila da Goiabeira (Psidium guajava L., Myrtaceae): Influência de Fragmentos Florestais Próximos aos Pomares na Região de Santa Teresa, Espírito Santo. Master's thesis, UFV, Viçosa.   Bosch J, Bosch J and Kemp WP (2002). Developing and establishing bee species as crop pollinators: the example of Osmia spp. (Hymenoptera: Megachilidae) and fruit trees. Bull. Entomol. Res. 92: 3-16. PMid:12020357   Brito RM and Arias MC (2005). Mitochondrial DNA characterization of two Partamona species (Hymenoptera, Apidae, Meliponini) by PCR+RFLP and sequencing. Apidologie 36: 431-437. http://dx.doi.org/10.1051/apido:2005020   Brito RM and Arias MC (2010). Genetic structure of Partamona helleri (Apidae, Meliponini) from Neotropical Atlantic rainforest. Insectes Soc. 57: 413-419. http://dx.doi.org/10.1007/s00040-010-0098-x   Carvalho RIN (2003). Frutificação efetiva da aceroleira em condições outonais no município de Viamão-RS, Brasil. Rev. Acad. Ciênc. Agrár. Ambient. 1: 23-26.   Cornuet JML and Garnery L (1991). Mitochondrial DNA variation in honeybees and its phylogeographic implications. Apidologie 22: 627-642. http://dx.doi.org/10.1051/apido:19910606   Cruz DO, Jorge DMM, Pereira JOP, Torres DC, et al. (2006). Intraspecific variation in the first internal transcribed spacer (ITS1) of the nuclear ribosomal DNA in Melipona subnitida (Hymenoptera, Apidae), an endemic stingless bee from northeastern Brazil. Apidologie 37: 376-386. http://dx.doi.org/10.1051/apido:2006003   Danforth BN, Shuqing JI and Ballard LJ (2003). Gene flow and population structure in an oligolectic desert bee, Macrotera (Macroteropsis) portalis (Hymenoptera: Andrenidae). J. Kans. Entomol. Soc. 76: 221-235.   Diniz NM, Soares AEE, Sheppard WS and Del Lama MA (2003). Genetics structure of honeybee populations from southern Brazil and Uruguay. Genet. Mol. Biol. 26: 47-52. http://dx.doi.org/10.1590/S1415-47572003000100008   Fernandes CRM, Martins CF, Ferreira KM and Del Lama MA (2012). Gene variation, population differentiation, and sociogenetic structure of nests of Partamona seridoensis (Hymenoptera: Apidae, Meliponini). Biochem. Genet. 50: 325-335. http://dx.doi.org/10.1007/s10528-011-9465-1 PMid:21938561   Fernandes-Salomão TM, Muro-Abad JI, Campos LAO and Araújo EF (2002). Mitochondrial and nuclear DNA characterization in the Melipona species (Hymenoptera, Meliponini) by RFLP analisys. Hereditas 137: 229-233. http://dx.doi.org/10.1034/j.1601-5223.2002.01685.x   Ferreira VS, Aguiar CML, Costa MA and Silva JG (2011). Morphometric analysis of populations of Centris aenea Lepeletier (Hymenoptera: Apidae) from Northeastern Brazil. Neotrop. Entomol. 40: 97-102. http://dx.doi.org/10.1590/S1519-566X2011000100014 PMid:21437489   Francisco FO and Arias MC (2010). Inferences of evolutionary and ecological events that influenced the population structure of Plebeia remota, a stingless bee from Brazil. Apidologie 41: 216-224. http://dx.doi.org/10.1051/apido/2009079   Francisco FO, Silvestre D and Arias MC (2001). Mitochondrial DNA characterization of five species of Plebeia (Apidae: Meliponini): RFLP and restriction maps. Apidologie 32: 323-332. http://dx.doi.org/10.1051/apido:2001132   Franck P, Garnery L, Loiseau A, Oldroyd BP, et al. (1998). The original of west European subspecies of honeybees (Apis mellifera): new insights from microsatellite and mitochondrial data. Evolution 52: 1119-1134. http://dx.doi.org/10.2307/2411242   Francoy TM, Wittmann D, Steinhage V, Drauschke M, et al. (2009). Morphometric and genetic changes in a population of Apis mellifera after 34 years of Africanization. Genet. Mol. Res. 8: 709-717. http://dx.doi.org/10.4238/vol8-2kerr019 PMid:19554770   Freitas BM, Alves JE, Brandão GF and Araujo ZB (1999). Pollination requirementes of West Indian cherry (Malpighia emarginata) and its putative pollinators, Centris bees, in NE Brazil. J. Agr. Sci. 133: 303-311. http://dx.doi.org/10.1017/S0021859699006930   Gaglianone MC (2003). Abelhas da Tribo Centridini na Estação Ecológica de Jataí: Composição de Espécies e Interações com Flores de Malpighiaceae. In: Apoidea Neotropica (Melo GAR and Alves-dos-Santos I, eds.). Editora da Universidade do Extremo Sul Catarinense, Criciúma, 279-284.   Garnery L, Solignac M, Celebrano G and Cornuet JM (1993). A simple test using restricted PCR-amplified mitochondrial DNA to study the genetic structure of Apis mellifera L. Experientia 49: 1016-1021. http://dx.doi.org/10.1007/BF02125651   Gasparich GE, Sheppard WS, Han HY, McPheron BA, et al. (1995). Analysis of mitochondrial DNA and development of PCR-based diagnostic molecular markers for Mediterranean fruit fly (Ceratitis capitata) populations. Insect Mol. Biol. 4: 61-67. http://dx.doi.org/10.1111/j.1365-2583.1995.tb00008.x PMid:7742977   Guedes RS, Zanella FCV, Martins CF and Schlindwein C (2011). Déficit de polinização da aceroleira no período seco do semiárido paraibano. Rev. Bras. Frutic. 33: 465-471. http://dx.doi.org/10.1590/S0100-29452011005000060   Hall HG and Smith DR (1991). Distinguishing African and European honeybee matrilines using amplified mitochondrial DNA. Proc. Natl. Acad. Sci. 88: 4548-4552. http://dx.doi.org/10.1073/pnas.88.10.4548 PMid:1674608 PMCid:51698   Han HY and McPheron BA (1997). Molecular phylogenetic study of Tephritidae (Insecta: Diptera) using partial sequences of the mitochondrial 16S ribosomal DNA. Mol. Phylogenet. Evol. 7: 17-32. http://dx.doi.org/10.1006/mpev.1996.0370 PMid:9007017   Ivanova EN, Petrov P, Bouga M, Emmanouel NG, et al. (2010). Genetic variation in honey bee (Apis mellifera L.) populations from Bulgaria. J. Apic. Sci. 54: 51-62.   Ji T, Ling Y and Chen G (2011). Genetic diversity and population structure of Chinese honeybees (Apis cerana) under microsatellite markers. Afr. J. Biotechnol. 10: 1712-1720.   Moretto G and Arias MC (2005). Detection of mitochondrial DNA restriction site differences between the subspecies of Melipona quadrifasciata Lepeletier (Hymenoptera: Apidae: Meliponini). Neotrop. Entomol. 34: 381-385. http://dx.doi.org/10.1590/S1519-566X2005000300004   Nabhan GP and Buchman SL (1997). Services Provided by Pollinators. In: Natures's Services (Dally GC, ed.). Island Press, Washington, 133-150.   Oliveira RC, Nunes FMF, Campos APS, Vasconcelos SM, et al. (2004). Genetic divergence in Tetragonisca angustula Latreille, 1811 (Hymenoptera, Meliponinae, Trigonini) based on rap markers. Genet. Mol. Biol. 27: 181-186. http://dx.doi.org/10.1590/S1415-47572004000200009   Raeder U and Broda P (1985). Rapid preparation of DNA from filamentous fungi. Lett. Appl. Microbiol. 1: 17-20. http://dx.doi.org/10.1111/j.1472-765X.1985.tb01479.x   Ramalho M and Silva M (2002). Flora oleífera e sua guilda de abelhas em uma comunidade de restinga tropical. Sitientibus 2: 34-43.   Silvestre D, Dowton M and Arias MC (2008). The mitochondrial genome of the stingless bee Melipona bicolor (Hymenoptera, Apidae, Meliponini): Sequence, gene organization and a unique tRNA translocation event conserved across the tribe Meliponini. Genet. Mol. Biol. 31: 451-460. http://dx.doi.org/10.1590/S1415-47572008000300010   Siqueira KMM, Martins CF, Kill LHP and Silva LT (2011). Estudo comparativo da polinização em variedades de aceroleiras (Malpighia emarginata dc. Malpighiaceae). Rev. Caatinga 24: 18-25.   Sofia SH, Paula FM, Santos AM, Almeida FS, et al. (2005). Genetic struture analysis of Eufriesea violacea (Hymenoptera, Apidae) populations from southern Brazilian Atlantic rainforest remnants. Genet. Mol. Biol. 28: 479-484. http://dx.doi.org/10.1590/S1415-47572005000300026   Suzuki KM, Arias MC, Giangarelli DC, Freiria GA, et al. (2010). Mitochondrial DNA diversity of orchid bee Euglossa fimbriata (Hymenoptera: Apidae) populations assessed by PCR-RFLP. Biochem. Genet. 48: 326-341. http://dx.doi.org/10.1007/s10528-009-9325-4 PMid:20091342   Ting J, Ling Y, Min L, Wen-Bin B, et al. (2009). Analysis of genetic diversity of the higher and lower royal jelly producing bee in China with microssatellite markers. Res. J. Biol. Sci. 4: 231-235.   Vilhena AMGF, Rabelo LS, Bastos EMAF and Augusto SC (2012). Acerola pollinators in the savanna of Central Brazil: temporal variations in oil-collecting bee richness and a mutualistic network. Apidologie 43: 51-62. http://dx.doi.org/10.1007/s13592-011-0081-1   Weinlich R, Francisco FO and Arias MC (2004). Mitochondrial DNA restriction and genomic maps of seven species of Melipona (Apidae: Meliponini). Apidologie 35: 365-370. http://dx.doi.org/10.1051/apido:2004027
A. Barth, Souza, V. A., Solé, M., and Costa, M. A., Molecular cytogenetics of nucleolar organizer regions in Phyllomedusa and Phasmahyla species (Hylidae, Phyllomedusinae): a cytotaxonomic contribution, vol. 12, pp. 2400-2408, 2013.
2011
C. G. Oliveira, Gaiotto, F. A., Costa, M. A., and Martinez, R. A., Molecular genetic analysis of the yellow-breasted capuchin monkey: recommendations for ex situ conservation, vol. 10, pp. 1471-1478, 2011.
Amaral JM, Simoes AL and De Jong D (2005). Allele frequencies and genetic diversity in two groups of wild tufted capuchin monkeys (Cebus apella nigritus) living in an urban forest fragment. Genet. Mol. Res. 4: 832-838. PMid:16475131 Bandelt HJ, Forster P and Rohl A (1999). Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 16: 37-48. PMid:10331250 Belkhir K, Borsa P, Chikhi L and Raufaste N (2004). GENETIX 4.05, Logiciel sous Windows TM pour la Genetique des Populations. Laboratoire Génome, Populations, Interactions, CNRS UMR 5171, Université de Montpellier II, Montpellier. Bohle UR and Zischler H (2002). Polymorphic microsatellite loci for the moustached tamarin (Saguinus mystax) and their cross-species amplification in the New World monkeys. Mol. Ecol. Notes 2: 1-3. Boutin-Ganache I, Raposo M, Raymond M and Deschepper CF (2001). M13-tailed primers improve the readability and usability of microsatellite analyses performed with two different allele-sizing methods. Biotechniques 31: 24-6, 28. PMid:11464515 Caballero A, Rodríguez-Ramilo ST, Ávila V and Fernández J (2010). Management of genetic diversity of subdivided populations in conservation programmes. Conserv. Genet. 11: 409-419. doi:10.1007/s10592-009-0020-0 Callen DF, Thompson AD, Shen Y, Phillips HA, et al. (1993). Incidence and origin of “null” alleles in the (AC)n microsatellite markers. Am. J. Hum. Genet. 52: 922-927. PMid:8488841    PMCid:1682051 Coimbra-Filho AF, Rylands AB, Pissinatti A and Santos IB (1992). The distribution and status of the buff-headed capuchin monkey, Cebus xanthosternos Wied 1820, in the Atlantic Forest region of eastern Brazil. Prim. Conserv. 12/13: 24-30. Ellsworth JA and Hoelzer GA (1998). Characterization of microsatellite loci in a New World primate, the mantled howler monkey (Alouatta palliata). Mol. Ecol. 7: 657-658. PMid:9633106 Escobar-Paramo P (2000). Microsatellite primers for the wild brown capuchin monkey Cebus apella. Mol. Ecol. 9: 107- 108. doi:10.1046/j.1365-294x.2000.00764.x PMid:10652080 Gilligan DM and Frankham R (2003). Dynamics of genetic adaptation to captivity. Conserv. Genet. 4: 189-197. doi:10.1023/A:1023391905158 Kierulff MCM, Santos GR, Canale GR and Guidorizzi CE (2005). Plano de Manejo para a Conservação do Macaco-Prego-do-Peito-Amarelo, Cebus xanthosternos. Relatório apresentado ao PROBIO-MMA. Kocher TD, Thomas WK, Meyer A, Edwards SV, et al. (1989). Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proc. Natl. Acad. Sci. U. S. A. 86: 6196-6200. doi:10.1073/pnas.86.16.6196 Martini AMZ, Fiaschi P, Amorim AM and Paixão JL (2007). A hot-point within a hot-spot: a high diversity site in Brazil’s Atlantic Forest. Biodiv. Cons. 16: 3111-3128. Nei M (1978). Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89: 583-590. PMid:17248844    PMCid:1213855 Oliver WLR and Santos IB (1991). Threatened endemic mammals of the atlantic forest region of South-East Brazil. J. Wildl. Preserv. Trust 4: 1-126. Oosterhout CV, Hutchinson WF, Wills DPM and Shipley P (2004). MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4: 535-538. doi:10.1111/j.1471-8286.2004.00684.x Ramirez O, Laura A, Enseñat C, Vilà C, et al. (2006). Genetic assessment of the Iberian wolf Canis lupus signatus captive breeding program. Conserv. Genet. 7: 861-878. doi:10.1007/s10592-006-9123-z Rudnick JA and Lacy RC (2008). The impact of assumptions about founder relationships on the effectiveness of captive breeding strategies. Conserv. Genet. 9: 1439-1450. doi:10.1007/s10592-007-9472-2 Rylands AB, Kierulff MCM and Mittermeier RA (2005). Notes on the taxonomy and distributions of the tufted capuchin monkeys (Cebus, Cebidae) of South America. Lundiana 6: 97-110. Sbisá E, Tanzariello F, Reyes F, Pesole G, et al. (1997). Mammalian mitochondrial D-loop region structural analysis: identification of new conserved sequences and the functional and evolutionary implications. Gene 205: 125-140. doi:10.1016/S0378-1119(97)00404-6 Templeton AR (2001). Using phylogeographic analyses of gene trees to test species status and processes. Mol. Ecol. 10: 779-791. doi:10.1046/j.1365-294x.2001.01199.x Thompson JD, Higgins DG and Gibson TJ (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680. doi:10.1093/nar/22.22.4673 PMid:7984417    PMCid:308517 Tzika AC, Remy C, Gibson R and Milinkovitch MC (2009). Molecular genetic analysis of a captive-breeding program: the vulnerable endemic Jamaican yellow boa. Conserv. Genet. 10: 69-77. doi:10.1007/s10592-008-9519-z Witte SM and Rogers J (1999). Microsatellite polymorphisms in Bolivian squirrel monkeys (Saimiri boliviensis). Am. J. Primatol. 47: 75-84. doi:10.1002/(SICI)1098-2345(1999)47:1<75::AID-AJP9>3.0.CO;2-1
V. Andrade-Souza, Costa, M. G. C., Chen, C. X., Gmitter, Jr., F. G., and Costa, M. A., Physical location of the carotenoid biosynthesis genes Psy and β-Lcy in Capsicum annuum (Solanaceae) using heterologous probes from Citrus sinensis (Rutaceae), vol. 10, pp. 404-409, 2011.
Ben CA, Paran I, Grube RC, Jahn M, et al. (2001). QTL mapping of fruit-related traits in pepper (Capsicum annuum). Theor. Appl. Genet. 102: 1016-1028. http://dx.doi.org/10.1007/s001220000461   Chen C and Gmitter FG (1999). Direct cloning and sequencing of bacterial artificial chromosome (BAC) insert ends based on double digestion. Plant Mol. Biol. Rep. 17: 231-238. http://dx.doi.org/10.1023/A:1007699226063   Chen C, Costa MGC, Yu Q, Moore GA, et al. (2010). Identification of novel members in sweet orange carotenoid biosynthesis gene families. Tree Genet. Genome 6: 905-914. http://dx.doi.org/10.1007/s11295-010-0300-3   Fraser PD and Bramley PM (2004). The biosynthesis and nutritional uses of carotenoids. Prog. Lipid Res. 43: 228-265. http://dx.doi.org/10.1016/j.plipres.2003.10.002 PMid:15003396   Ha SH, Kim JB, Park JS, Lee SW, et al. (2007). A comparison of the carotenoid accumulation in Capsicum varieties that show different ripening colours: deletion of the capsanthin-capsorubin synthase gene is not a prerequisite for the formation of a yellow pepper. J. Exp. Bot. 58: 3135-3144. http://dx.doi.org/10.1093/jxb/erm132 PMid:17728301   Huh JH, Kang BC, Nahm SH, Kim S, et al. (2001). A candidate gene approach identified phytoene synthase as the locus for mature fruit color in red pepper (Capsicum spp.). Theor. Appl. Genet. 102: 524-530. http://dx.doi.org/10.1007/s001220051677   Hurtado-Hernandez H and Smith PC (1985). Inheritance of mature fruit color in Capsicum annuum L. J. Hered. 76: 211-213.   Inoue K, Furbeea KJ, Uratsua S and Katob M (2006). Catalytic activities and chloroplast import of carotenogenic enzymes from citrus. Physiol. Plantarum 127: 561-570. http://dx.doi.org/10.1111/j.1399-3054.2006.00690.x   Jiang J, Gill BS, Wang GL, Ronald PC, et al. (1995). Metaphase and interphase fluorescence in situ hybridization mapping of the rice genome with bacterial artificial chromosomes. Proc. Natl. Acad. Sci. U. S. A. 92: 4487-4491. http://dx.doi.org/10.1073/pnas.92.10.4487 PMid:7753830 PMCid:41969   Kang BC, Nahm SH, Huh JH, Yoo HS, et al. (2001). An interspecific (Capsicum annuum x C. chinese) F2 linkage map in pepper using RFLP and AFLP markers. Theor. Appl. Genet. 102: 531-539. http://dx.doi.org/10.1007/s001220051678   Kwon JK and Kim BD (2009). Localization of 5S and 25S rRNA genes on somatic and meiotic chromosomes in Capsicum species of chili pepper. Mol. Cells 27: 205-209. http://dx.doi.org/10.1007/s10059-009-0025-z PMid:19277503   Lefebvre V, Kuntz M, Camara B and Palloix A (1998). The capsanthin-capsorubin synthase gene: a candidate gene for the y locus controlling the red fruit colour in pepper. Plant Mol. Biol. 36: 785-789. http://dx.doi.org/10.1023/A:1005966313415 PMid:9526511   Livingstone KD, Lackney VK, Blauth JR, van Wijk R, et al. (1999). Genome mapping in Capsicum and the evolution of genome structure in the Solanaceae. Genetics 152: 1183-1202. PMid:10388833 PMCid:1460652   Moscone EA, Lambrou M, Hunziker AT and Ehrendorfer F (1993). Giemsa C-banded karyotypes in Capsicum (Solanaceae). Plant Syst. Evol. 186: 213-229. http://dx.doi.org/10.1007/BF00940799   Ning SB, Song YC, Wang L, Wei WH, et al. (2000). Physical mapping of the sequences homologous to disease resistance genes myb1 and NDR1 in maize. Acta Bot. Sin. 42: 605-610.   Park YK, Kim BD, Kim BS, Armstrong KC, et al. (1999). Karyotyping of the chromosomes and physical mapping of the 5S rRNA and 18S-26S rRNA gene families in five different species in Capsicum. Genes Genet. Syst. 74: 149-157. http://dx.doi.org/10.1266/ggs.74.149   Popovsky S and Paran I (2000). Molecular genetics of the y locus in pepper: its relation to capsanthin-capsorubin synthase and to fruit color. Theor. Appl. Genet. 101: 86-89. http://dx.doi.org/10.1007/s001220051453   Pozzobon MT, Schifino-Wittmann MT and Bianchetti LB (2006). Chromosome numbers in wild and semidomesticated Brazilian Capsicum L. (Solanaceae) species: do x = 12 and x = 13 represent two evolutionary lines? Bot. J. Linn. Soc. 151: 259-269. http://dx.doi.org/10.1111/j.1095-8339.2006.00503.x   Quirós ARB and Costa HS (2006). Analysis of carotenoids in vegetable and plasma samples: a review. J. Food Compos. Anal. 19: 97-111. http://dx.doi.org/10.1016/j.jfca.2005.04.004   Rao GU, Ben CA, Borovsky Y and Paran I (2003). Mapping of yield-related QTLs in pepper in an interspecific cross of Capsicum annuum and C. frutescens. Theor. Appl. Genet. 106: 1457-1466. PMid:12750789   Schmidt T and Heslop-Harrison JS (1998). Genomes, genes and junk: the large-scale organization of plant chromosomes. Trends Plant Sci. 3: 195-199. http://dx.doi.org/10.1016/S1360-1385(98)01223-0   Thorup TA, Tanyolac B, Livingstone KD, Popovsky S, et al. (2000). Candidate gene analysis of organ pigmentation loci in the Solanaceae. Proc. Natl. Acad. Sci. U. S. A. 97: 11192-11197. http://dx.doi.org/10.1073/pnas.97.21.11192 PMid:11027328 PMCid:17176   Wu F, Eannetta NT, Xu Y, Durrett R, et al. (2009). A COSII genetic map of the pepper genome provides a detailed picture of synteny with tomato and new insights into recent chromosome evolution in the genus Capsicum. Theor. Appl. Genet. 118: 1279-1293. http://dx.doi.org/10.1007/s00122-009-0980-y PMid:19229514   Zwick MS, Islam-Faridi MN, Czeschin DG Jr, Wing RA, et al. (1998). Physical mapping of the liguleless linkage group in Sorghum bicolor using rice RFLP-selected sorghum BACs. Genetics 148: 1983-1992. PMid:9560411 PMCid:1460102