Publications
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“Isolation and partial characterization of a root-specific promoter for stacking multiple traits into cassava (Manihot esculenta CRANTZ)”, vol. 10, pp. 1032-1041, 2011.
, Altschul SF,Madden TL,Schaffer AA,Zhang J,et al.(1997).Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
doi:10.1093/nar/25.17.3389
PMid:9254694 PMCid:146917
Beeching JR, Han Y, Gómez-Vásquez R, Day RC, et al. (1998). Wound and defense responses in cassava as related to post-harvest physiological deterioration. Recent Adv. Phytochem. 32: 231-248.
CockJH (1985).Cassava: New Potential for a Neglected Crop.Westfield Press,Boulder.
de Souza CR, Aragao FJ, Moreira EC, Costa CN, et al. (2009). Isolation and characterization of the promoter sequence of a cassava gene coding for Pt2L4,a glutamicacid-richprotein differentially expressed in storage roots.Genet. Mol. Res. 8: 334-344.
doi:10.4238/vol8-1gmr560
PMid:19440969
Dellaporta SL,Wood J and Hicks JB (1983).A plant DNA minipreparation: version II.Plant Mol. Biol. Rep. 1: 19-21.
doi:10.1007/BF02712670
El-Sharkawy MA (2004). Cassava biology and physiology. Plant Mol. Biol. 56: 481-501.
doi:10.1007/s11103-005-2270-7
PMid:15669146
Higo K, Ugawa Y, Iwamoto M and Korenaga T (1999). Plant cis-acting regulatory DNA elements (PLACE)database: 1999. Nucleic Acids Res. 27: 297-300.
doi:10.1093/nar/27.1.297
PMid:9847208 PMCid:148163
LuGand Moriyama EN (2004).Vector NTI,a balanced all-in-one sequence analysis suite.Brief. Bioinform. 5: 378-388.
doi:10.1093/bib/5.4.378
PMid:15606974
Montagnac JA, Davis CR and Tanumihardjo SA (2009). Nutritional value of cassava for use as a staple food and recent advances for improvement. Compr. Rev. Food Sci. Food Safety 8: 181-194.
doi:10.1111/j.1541-4337.2009.00077.x
Puonti-Kaerlas J (1998). Cassava biotechnology. Biotechnol. Genet. Eng. Rev. 15: 329-364.
Restrepo S, Velez CM, Duque MC and Verdier V (2004). Genetic structure and population dynamics of Xanthomonas axonopodis pv. manihotis in Colombia from 1995 to 1999. Appl. Environ. Microbiol. 70: 255-261.
doi:10.1128/AEM.70.1.255-261.2004
PMid:14711649 PMCid:321237
SambrookJ,FritschEand Maniatis T (1989).Molecular Cloning: A Laboratory Manual.Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
Thomson JA (2008). The role of biotechnology for agricultural sustainability in Africa. Philos. Trans. R. C. Lond. B. Biol. Sci. 363: 905-913.
doi:10.1098/rstb.2007.2191
PMid:17761472 PMCid:2610117
Verdier V, Restrepo S, Mosquera G, Jorge V, et al. (2004). Recent progress in the characterization of molecular determinants in the Xanthomonas axonopodis pv. manihotis-cassava interaction. Plant Mol. Biol. 56: 573-584.
doi:10.1007/s11103-004-5044-8
PMid:15630621
Zhang P, Bohl-Zenger S, Puonti-Kaerlas J, Potrykus I, et al. (2003). Two cassava promoters related to vascular expression and storage root formation. Planta 218: 192-203.
doi:10.1007/s00425-003-1098-0
PMid:13680228
“Enhancer/Suppressor mutator (En/Spm)-like transposable elements of cassava (Manihot esculenta) are transcriptionally inactive”, vol. 9, pp. 639-650, 2010.
, Altschul SF, Gish W, Miller W, Myers EW, et al. (1990). Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
PMid:2231712
Banks JA, Masson P and Fedoroff N (1988). Molecular mechanisms in the developmental regulation of the maize Suppressor-mutator transposable element. Genes Dev. 2: 1364-1380.
http://dx.doi.org/10.1101/gad.2.11.1364
PMid:2463208
Beare PA, Unsworth N, Andoh M, Voth DE, et al. (2009). Comparative genomics reveal extensive transposon-mediated genomic plasticity and diversity among potential effector proteins within the genus Coxiella. Infect. Immun. 77: 642-656.
http://dx.doi.org/10.1128/IAI.01141-08
PMid:19047403 PMCid:2632050
Begin M and Schoen DJ (2007). Transposable elements, mutational correlations, and population divergence in Caenorhabditis elegans. Evolution 61: 1062-1070.
http://dx.doi.org/10.1111/j.1558-5646.2007.00097.x
PMid:17492961
Chandler VL and Walbot V (1986). DNA modification of a maize transposable element correlates with loss of activity. Proc. Natl. Acad. Sci. U. S. A. 83: 1767-1771.
http://dx.doi.org/10.1073/pnas.83.6.1767
PMid:3006070 PMCid:323165
Chang S, Puryear J and Cairney J (1993). A simple and efficient method for isolating RNA from pine trees. Plant Mol. Biol. Rep. 11: 113-116.
http://dx.doi.org/10.1007/BF02670468
Chomet PS, Wessler S and Dellaporta SL (1987). Inactivation of the maize transposable element Activator (Ac) is associated with its DNA modification. EMBO J. 6: 295-302.
PMid:3034583 PMCid:553394
Dellaporta SL, Wood J and Hicks JB (1983). A plant DNA minipreparation: Version II. Plant Mol. Biol. Rep. 1: 19-21.
http://dx.doi.org/10.1007/BF02712670
Fedoroff N, Schlappi M and Raina R (1995). Epigenetic regulation of the maize Spm transposon. Bioessays 17: 291-297.
http://dx.doi.org/10.1002/bies.950170405
PMid:7741722
Finnegan DJ (1992). Transposable elements. Curr. Opin. Genet. Dev. 2: 861-867.
http://dx.doi.org/10.1016/S0959-437X(05)80108-X
Finnegan EJ, Peacock WJ and Dennis ES (1996). Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development. Proc. Natl. Acad. Sci. U. S. A. 93: 8449-8454.
http://dx.doi.org/10.1073/pnas.93.16.8449
PMid:8710891 PMCid:38691
Gbadegesin MA, Gómez-Vásquez R, Reilly K and Beeching JR (2007). Transcriptionally active mutator-like transposable elements in the genome of Cassava (Manihot esculenta Crantz). Asian J. Plant Sci. 6: 129-136.
http://dx.doi.org/10.3923/ajps.2007.129.136
Grant SR, Gierl A and Saedler H (1990). En/Spm encoded tnpA protein requires a specific target sequence for suppression. EMBO J. 9: 2029-2035.
PMid:2162760 PMCid:551919
Grant SR, Hardenack S, Trentmann S and Saedler H (1993). Functional cis-element sequence requirements for suppression of gene expression by the TNPA protein of the Zea mays transposon En/Spm. Mol. Gen. Genet. 241: 153-160.
http://dx.doi.org/10.1007/BF00280212
PMid:8232198
Han Y, Gómez-Vásquez R, Reilly K, Li H, et al. (2001). Hydroxyproline-rich glycoproteins expressed during stress responses in cassava. Euphytica 120: 59-70.
http://dx.doi.org/10.1023/A:1017547419332
Itoh Y, Hasebe M, Davies E, Takeda J, et al. (2003). Survival of Tdc transposable elements of the En/Spm superfamily in the carrot genome. Mol. Genet. Genomics 269: 49-59.
PMid:12715153
Kakutani T, Jeddeloh JA, Flowers SK, Munakata K, et al. (1996). Developmental abnormalities and epimutations associated with DNA hypomethylation mutations. Proc. Natl. Acad. Sci. U. S. A. 93: 12406-12411.
http://dx.doi.org/10.1073/pnas.93.22.12406
PMid:8901594 PMCid:38004
Lander ES, Linton LM, Birren B, Nusbaum C, et al. (2001). Initial sequencing and analysis of the human genome. Nature 409: 860-921.
http://dx.doi.org/10.1038/35057062
PMid:11237011
Lisch D, Carey CC, Dorweiler JE and Chandler VL (2002). A mutation that prevents paramutation in maize also reverses Mutator transposon methylation and silencing. Proc. Natl. Acad. Sci. U. S. A. 99: 6130-6135.
http://dx.doi.org/10.1073/pnas.052152199
PMid:11959901 PMCid:122914
Luo D, Coen ES, Doyle S and Carpenter R (1991). Pigmentation mutants produced by transposon mutagenesis in Antirrhinum majus. Plant J. 1: 59-69.
http://dx.doi.org/10.1111/j.1365-313X.1991.00059.x
PMid:1668965
McClintock B (1954). Mutations in maize and chromosomal aberrations in Neurospora. Carnegie Inst. Washington Yearbook 53: 254-261.
Peterson PA (1953). A mutable pale green locus in maize. Genetics 38: 682-683.
Ronemus MJ, Galbiati M, Ticknor C, Chen J, et al. (1996). Demethylation-induced developmental pleiotropy in Arabidopsis. Science 273: 654-657.
http://dx.doi.org/10.1126/science.273.5275.654
PMid:8662558
Sambrook J, Fritsch E and Maniatis T (1989). Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
SanMiguel P, Tikhonov A, Jin YK, Motchoulskaia N, et al. (1996). Nested retrotransposons in the intergenic regions of the maize genome. Science 274: 765-768.
http://dx.doi.org/10.1126/science.274.5288.765
PMid:8864112
Singer T, Yordan C and Martienssen RA (2001). Robertson's Mutator transposons in A. thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1). Genes Dev. 15: 591-602.
http://dx.doi.org/10.1101/gad.193701
PMid:11238379 PMCid:312647
Speulman E, Metz PL, van ArKel G, te Lintel HB, et al. (1999). A two-component enhancer-inhibitor transposon mutagenesis system for functional analysis of the Arabidopsis genome. Plant Cell 11: 1853-1866.
PMid:10521517 PMCid:144104
Staginnus C, Huettel B, Desel C, Schmidt T, et al. (2001). A PCR-based assay to detect En/Spm-like transposon sequences in plants. Chromosome Res. 9: 591-605.
http://dx.doi.org/10.1023/A:1012455520353
PMid:11721956
Takeda S, Sugimoto K, Otsuki H and Hirochika H (1998). Transcriptional activation of the tobacco retrotransposon Tto1 by wounding and methyl jasmonate. Plant Mol. Biol. 36: 365-376.
http://dx.doi.org/10.1023/A:1005911413528
PMid:9484477
Thompson JD, Higgins DG and Gibson TJ (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
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PMid:7984417 PMCid:308517
Tissier AF, Marillonnet S, Klimyuk V, Patel K, et al. (1999). Multiple independent defective suppressor-mutator transposon insertions in Arabidopsis: a tool for functional genomics. Plant Cell 11: 1841-1852.
PMid:10521516 PMCid:144107
Wisman E, Cardon GH, Fransz P and Saedler H (1998). The behaviour of the autonomous maize transposable element En/ Spm in Arabidopsis thaliana allows efficient mutagenesis. Plant Mol. Biol. 37: 989-999.
http://dx.doi.org/10.1023/A:1006082009151
PMid:9700071
Zabala G and Vodkin L (2007). Novel exon combinations generated by alternative splicing of gene fragments mobilized by a CACTA transposon in Glycine max. BMC Plant Biol. 7: 38.
http://dx.doi.org/10.1186/1471-2229-7-38
PMid:17629935 PMCid:1947982