Publications
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“Impacts of single nucleotide polymorphisms and haplotypes in the bovine Dapper1 gene on body weight”, vol. 12, pp. 1254-1268, 2013.
, Barrett JC, Fry B, Maller J and Daly MJ (2005). Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21: 263-265.
http://dx.doi.org/10.1093/bioinformatics/bth457
PMid:15297300
Cerpa W, Toledo EM, Varela-Nallar L and Inestrosa NC (2009). The role of Wnt signaling in neuroprotection. Drug News Perspect. 22: 579-591.
http://dx.doi.org/10.1358/dnp.2009.22.10.1443391
PMid:20140278
Cheyette BN, Waxman JS, Miller JR, Takemaru K, et al. (2002). Dapper, a Dishevelled-associated antagonist of beta-catenin and JNK signaling, is required for notochord formation. Dev. Cell 2: 449-461.
http://dx.doi.org/10.1016/S1534-5807(02)00140-5
Dale RM, Sisson BE and Topczewski J (2009). The emerging role of Wnt/PCP signaling in organ formation. Zebrafish 6: 9-14.
http://dx.doi.org/10.1089/zeb.2008.0563
PMid:19250029 PMCid:2758485
Fisher DA, Kivimae S, Hoshino J, Suriben R, et al. (2006). Three Dact gene family members are expressed during embryonic development and in the adult brains of mice. Dev. Dyn. 235: 2620-2630.
http://dx.doi.org/10.1002/dvdy.20917
PMid:16881060
Fukuda T, Kokabu S, Ohte S, Sasanuma H, et al. (2010). Canonical Wnts and BMPs cooperatively induce osteoblastic differentiation through a GSK3beta-dependent and beta-catenin-independent mechanism. Differentiation 80: 46-52.
http://dx.doi.org/10.1016/j.diff.2010.05.002
PMid:20546990
Gao X, Wen J, Zhang L, Li X, et al. (2008). Dapper1 is a nucleocytoplasmic shuttling protein that negatively modulates Wnt signaling in the nucleus. J. Biol. Chem. 283: 35679-35688.
http://dx.doi.org/10.1074/jbc.M804088200
PMid:18936100
Gloy J, Hikasa H and Sokol SY (2002). Frodo interacts with Dishevelled to transduce Wnt signals. Nat. Cell Biol. 4: 351-357.
PMid:11941372
Katoh M and Katoh M (2003). Identification and characterization of human DAPPER1 and DAPPER2 genes in silico. Int. J. Oncol. 22: 907-913.
PMid:12632086
Kawai M, Mushiake S, Bessho K, Murakami M, et al. (2007). Wnt/Lrp/beta-catenin signaling suppresses adipogenesis by inhibiting mutual activation of PPARgamma and C/EBPalpha. Biochem. Biophys. Res. Commun. 363: 276-282.
http://dx.doi.org/10.1016/j.bbrc.2007.08.088
PMid:17888405
Kimchi-Sarfaty C, Oh JM, Kim IW, Sauna ZE, et al. (2007). A "silent" polymorphism in the MDR1 gene changes substrate specificity. Science 315: 525-528.
http://dx.doi.org/10.1126/science.1135308
PMid:17185560
Komar AA (2007). Silent SNPs: impact on gene function and phenotype. Pharmacogenomics 8: 1075-1080.
http://dx.doi.org/10.2217/14622416.8.8.1075
PMid:17716239
Kweekel DM, Antonini NF, Nortier JW, Punt CJ, et al. (2009). Explorative study to identify novel candidate genes related to oxaliplatin efficacy and toxicity using a DNA repair array. Br. J. Cancer 101: 357-362.
http://dx.doi.org/10.1038/sj.bjc.6605134
PMid:19536092 PMCid:2720215
Lango H, Palmer CN, Morris AD, Zeggini E, et al. (2008). Assessing the combined impact of 18 common genetic variants of modest effect sizes on type 2 diabetes risk. Diabetes 57: 3129-3135.
http://dx.doi.org/10.2337/db08-0504
PMid:18591388 PMCid:2570411
Marty A, Amigues Y, Servin B, Renand G, et al. (2010). Genetic variability and linkage disequilibrium patterns in the bovine DNAJA1 gene. Mol. Biotechnol. 44: 190-197.
http://dx.doi.org/10.1007/s12033-009-9228-y
PMid:20012712
Mullenbach R, Lagoda PJ and Welter C (1989). An efficient salt-chloroform extraction of DNA from blood and tissues. Trends Genet. 5: 391.
PMid:2623762
Nei M and Roychoudhury AK (1974). Sampling variances of heterozygosity and genetic distance. Genetics 76: 379-390.
PMid:4822472 PMCid:1213072
Sham P, Bader JS, Craig I, O'Donovan M, et al. (2002). DNA Pooling: a tool for large-scale association studies. Nat. Rev. Genet. 3: 862-871.
http://dx.doi.org/10.1038/nrg930
PMid:12415316
Stephens M, Smith NJ and Donnelly P (2001). A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet. 68: 978-989.
http://dx.doi.org/10.1086/319501
PMid:11254454 PMCid:1275651
Su Y, Zhang L, Gao X, Meng F, et al. (2007). The evolutionally conserved activity of Dapper2 in antagonizing TGF-beta signaling. FASEB J. 21: 682-690.
http://dx.doi.org/10.1096/fj.06-6246com
PMid:17197390
Tee JM, van Rooijen C, Boonen R and Zivkovic D (2009). Regulation of slow and fast muscle myofibrillogenesis by Wnt/ beta-catenin and myostatin signaling. PLoS One 4: e5880.
http://dx.doi.org/10.1371/journal.pone.0005880
PMid:19517013 PMCid:2690692
Wang J, Li ZJ, Lan XY, Hua LS, et al. (2010). Two novel SNPs in the coding region of the bovine PRDM16 gene and its associations with growth traits. Mol. Biol. Rep. 37: 571-577.
http://dx.doi.org/10.1007/s11033-009-9816-8
PMid:19760096
Waxman JS, Hocking AM, Stoick CL and Moon RT (2004). Zebrafish Dapper1 and Dapper2 play distinct roles in Wnt-mediated developmental processes. Development 131: 5909-5921.
http://dx.doi.org/10.1242/dev.01520
PMid:15539487
Xu N, Chen CY and Shyu AB (1997). Modulation of the fate of cytoplasmic mRNA by AU-rich elements: key sequence features controlling mRNA deadenylation and decay. Mol. Cell Biol. 17: 4611-4621.
PMid:9234718 PMCid:232314
Xu N, Loflin P, Chen CY and Shyu AB (1998). A broader role for AU-rich element-mediated mRNA turnover revealed by a new transcriptional pulse strategy. Nucleic Acids Res. 26: 558-565.
http://dx.doi.org/10.1093/nar/26.2.558
PMid:9421516 PMCid:147286
Xu Y, Liu J, Lan X, Zhang Y, et al. (2011). Consistent effects of single and combined SNP(s) within bovine paired box 7 gene (Pax7) on growth traits. J. Genet. 90: e53-e57.
PMid:21873775
Zhang L, Gao X, Wen J, Ning Y, et al. (2006). Dapper 1 antagonizes Wnt signaling by promoting dishevelled degradation. J. Biol. Chem. 281: 8607-8612.
http://dx.doi.org/10.1074/jbc.M600274200
PMid:16446366
Zhao H, Nettleton D and Dekkers JCM (2007). Evaluation of linkage disequilibrium measures between multi-allelic markers as predictors of linkage disequilibrium between single nucleotide polymorphisms. Genet. Res. 89: 1-6.
http://dx.doi.org/10.1017/S0016672307008634
PMid:17517154
“Sequence variants in the bovine PRDM16 gene associated with body weight in Chinese cattle breeds”, vol. 11, pp. 746-755, 2012.
, Chen H and Leibenguth F (1995). Studies on multilocus fingerprints, RAPD markers, and mitochondrial DNA of a gynogenetic fish (Carassius auratus gibelio). Biochem. Genet. 33: 297-306.
http://dx.doi.org/10.1007/BF02399929
PMid:8748455
Chen DX, Jin QJ, Fang XT, Zhang CL, et al. (2010). Analysis of the polymorphisms in the caprine PRDM16, SHH and SF-1 genes and their association with production traits in goats. Small Ruminant Res. 93: 193-197.
http://dx.doi.org/10.1016/j.smallrumres.2010.04.022
Cousin B, Cinti S, Morroni M, Raimbault S, et al. (1992). Occurrence of brown adipocytes in rat white adipose tissue: molecular and morphological characterization. J. Cell Sci. 10: 931-942.
Farmer SR (2008). Molecular determinants of brown adipocyte formation and function. Genes Dev. 22: 1269-1275.
http://dx.doi.org/10.1101/gad.1681308
Jenuwein T (2001). Re-SET-ting heterochromatin by histone methyltransferases. Trends Cell Biol. 11: 266-273.
http://dx.doi.org/10.1016/S0962-8924(01)02001-3
Kajimura S, Seale P, Tomaru T, Erdjument-Bromage H, et al. (2008). Regulation of the brown and white fat gene programs through a PRDM16/CtBP transcriptional complex. Genes Dev. 22: 1397-1409.
http://dx.doi.org/10.1101/gad.1666108
Kimchi-Sarfaty C, Oh JM, Kim IW, Sauna ZE, et al. (2007). A “silent” polymorphism in the MDR1 gene changes substrate specificity. Science 315: 525-528.
http://dx.doi.org/10.1126/science.1135308
PMid:17185560
Kinameri E, Inoue T, Aruga J, Imayoshi I, et al. (2008). Prdm proto-oncogene transcription factor family expression and interaction with the Notch-Hes pathway in mouse neurogenesis. PLoS One 3: e3859.
http://dx.doi.org/10.1371/journal.pone.0003859
PMid:19050759 PMCid:2585159
Komar AA (2007). Silent SNPs: impact on gene function and phenotype. Pharmacogenomics 8: 1075-1080.
http://dx.doi.org/10.2217/14622416.8.8.1075
PMid:17716239
Lai X, Lan X, Chen H, Wang X, et al. (2009). A novel SNP of the Hesx1 gene in bovine and its associations with average daily gain. Mol. Biol. Rep. 36: 1677-1681.
http://dx.doi.org/10.1007/s11033-008-9368-3
PMid:18853282
Lan XY, Pan CY, Chen H and Zhang CL (2007). An AluI PCR-RFLP detecting a silent allele at the goat POU1F1 locus and its association with production traits. Small Ruminant Res. 73: 8-12.
http://dx.doi.org/10.1016/j.smallrumres.2006.10.009
Nedergaard J, Bengtsson T and Cannon B (2007). Unexpected evidence for active brown adipose tissue in adult humans. Am. J. Physiol. Endocrinol. Metab. 293: E444-E452.
http://dx.doi.org/10.1152/ajpendo.00691.2006
PMid:17473055
Nei M and Roychoudhury AK (1974). Sampling variances of heterozygosity and genetic distance. Genetics 76: 379-390.
PMid:4822472 PMCid:1213072
Oh I, Shimizu H, Satoh T, Okada S, et al. (2006). Identification of nesfatin-1 as a satiety molecule in the hypothalamus. Nature 443: 709-712.
http://dx.doi.org/10.1038/nature05162
PMid:17036007
Ren G, Chen H, Zhang LZ, Lan XY, et al. (2010). A coding SNP of LHX4 gene is associated with body weight and body length in bovine. Mol. Biol. Rep. 37: 417-422.
http://dx.doi.org/10.1007/s11033-009-9486-6
PMid:19283511
Rhee EJ, Oh KW, Lee WY, Kim SY, et al. (2006). Effects of two common polymorphisms of peroxisome proliferator-activated receptor-gamma gene on metabolic syndrome. Arch. Med. Res. 37: 86-94.
http://dx.doi.org/10.1016/j.arcmed.2005.04.008
PMid:16314192
Rosado EL, Bressan J, Martins MF, Cecon PR, et al. (2007). Polymorphism in the PPARgamma2 and beta2-adrenergic genes and diet lipid effects on body composition, energy expenditure and eating behavior of obese women. Appetite 49: 635-643.
http://dx.doi.org/10.1016/j.appet.2007.04.003
PMid:17658197
Sauna ZE, Kimchi-Sarfaty C, Ambudkar SV and Gottesman MM (2007). Silent polymorphisms speak: how they affect pharmacogenomics and the treatment of cancer. Cancer Res. 67: 9609-9612.
http://dx.doi.org/10.1158/0008-5472.CAN-07-2377
PMid:17942888
Seale P, Kajimura S, Yang W, Chin S, et al. (2007). Transcriptional control of brown fat determination by PRDM16. Cell Metab. 6: 38-54.
http://dx.doi.org/10.1016/j.cmet.2007.06.001
PMid:17618855 PMCid:2564846
Seale P, Bjork B, Yang W, Kajimura S, et al. (2008). PRDM16 controls a brown fat/skeletal muscle switch. Nature 454: 961-967.
http://dx.doi.org/10.1038/nature07182
PMid:18719582 PMCid:2583329
Walczak R, Tontonoz P and Edward AD (2003). PPAR[gamma] Signaling in Adipose Tissue Development. In: Handbook of Cell Signaling, Academic Press, Burlington, 39-46.
Wang YH, Bower NI, Reverter A, Tan SH, et al. (2009). Gene expression patterns during intramuscular fat development in cattle. J. Anim. Sci. 87: 119-130.
http://dx.doi.org/10.2527/jas.2008-1082
PMid:18820161
Warner DR, Horn KH, Mudd L, Webb CL, et al. (2007). PRDM16/MEL1: a novel Smad binding protein expressed in murine embryonic orofacial tissue. Biochim. Biophys. Acta 1773: 814-820.
http://dx.doi.org/10.1016/j.bbamcr.2007.03.016
PMid:17467076
Yang LL, Hua Q, Liu RK and Yang Z (2009). Association between two common polymorphisms of PPARgamma gene and metabolic syndrome families in a Chinese population. Arch. Med. Res. 40: 89-96.
http://dx.doi.org/10.1016/j.arcmed.2008.11.005
PMid:19237017
Zhang C, Wang Y, Chen H, Lan X, et al. (2007). Enhance the efficiency of single-strand conformation polymorphism analysis by short polyacrylamide gel and modified silver staining. Anal. Biochem. 365: 286-287.
http://dx.doi.org/10.1016/j.ab.2007.03.023
PMid:17449006