Publications
Found 88 results
Filters: Author is L. Wang [Clear All Filters]
“Serum cytokine modulation after Staphylococcus hyicus infection in BALB/c mice”, vol. 14, pp. 16682-16693, 2015.
, “Serum Dickkopf-1 levels as a clinical and prognostic factor in patients with bladder cancer”, vol. 14, pp. 18181-18187, 2015.
, “Stimulation of bacterial biofilms on Th17 immune cells”, vol. 14, pp. 7721-7726, 2015.
, , “Assessment of sensitivity and virulence fitness costs of the AvrPik alleles from Magnaporthe oryzae to isoprothiolane”, vol. 13, pp. 9701-9709, 2014.
, “Association analysis between the OPG g.27667T>A genetic variant and bone mineral density in Chinese postmenopausal women”, vol. 13, pp. 7332-7338, 2014.
, “Association between STAT3 gene polymorphisms and ulcerative colitis susceptibility: a case-control study in the Chinese Han population”, vol. 13, pp. 2343-2348, 2014.
, “Association of DNA repair gene polymorphisms with response to chemotherapy and prognosis of gastric cancer”, vol. 13, pp. 7484-7491, 2014.
, “Devolopmental and growth temperature regulation of omega-3 fatty acid desaturase genes in safflower (Carthamus tinctorius L.)”, vol. 13, pp. 6623-6637, 2014.
, “Effect of the beta secretase-1 inhibitor on the amyloid C-terminal fragment of amyloid precursor protein processing in a hyperphosphorylated tau rat model”, vol. 13, pp. 6213-6227, 2014.
, “Effects of Mycoplasma pneumoniae infection on airway neurokinin-1 receptor expression in BALB/c mice”, vol. 13, pp. 8320-8328, 2014.
, “Expression analysis of self-incompatibility-associated genes in non-heading Chinese cabbage”, vol. 13, pp. 5025-5035, 2014.
, “Functional characterization of genetic variants in the porcine TLR3 gene”, vol. 13, pp. 1348-1357, 2014.
, “Molecular cytogenetic identification of a novel 1AL.1RS translocation line with powdery mildew resistance”, vol. 13, pp. 10678-10689, 2014.
, “Polymorphisms of the vitamin D receptor gene and the risk of inflammatory bowel disease: a meta-analysis”, vol. 13, pp. 2598-2610, 2014.
, “Roles of the bZIP gene family in rice”, vol. 13. pp. 3025-3036, 2014.
, , “Analysis of FOS, BTG2, and NR4A in the function of renal medullary hypertension”, vol. 12, pp. 3735-3741, 2013.
, “Evidence for inbreeding depression in the tree Robinia pseudoacacia L. (Fabaceae)”, vol. 12, pp. 6249-6256, 2013.
, “Fast preparation of a polyclonal antibody against chicken protocadherin 1”, vol. 12, pp. 2156-2166, 2013.
, “The genetic variant rs401681C/T is associated with the risk of non-small cell lung cancer in a Chinese mainland population”, vol. 12. pp. 67-73, 2013.
, Bae EY, Lee SY, Kang BK, Lee EJ, et al. (2012). Replication of results of genome-wide association studies on lung cancer susceptibility loci in a Korean population. Respirology 17: 699-706.
http://dx.doi.org/10.1111/j.1440-1843.2012.02165.x
PMid:22404340
Ginsberg MS (2005). Epidemiology of lung cancer. Semin. Roentgenol. 40: 83-89.
http://dx.doi.org/10.1053/j.ro.2005.01.007
PMid:15898406
Girard N, Lou E, Azzoli CG, Reddy R, et al. (2010). Analysis of genetic variants in never-smokers with lung cancer facilitated by an Internet-based blood collection protocol: a preliminary report. Clin. Cancer Res. 16: 755-763.
http://dx.doi.org/10.1158/1078-0432.CCR-09-2437
PMid:20068085 PMCid:2808124
Haiman CA, Chen GK, Vachon CM, Canzian F, et al. (2011). A common variant at the TERT-CLPTM1L locus is associated with estrogen receptor-negative breast cancer. Nat. Genet. 43: 1210-1214.
http://dx.doi.org/10.1038/ng.985
PMid:22037553 PMCid:3279120
Hardin M, Zielinski J, Wan ES, Hersh CP, et al. (2012). CHRNA3/5, IREB2, and ADCY2 are associated with Severe COPD in Poland. Am. J. Respir. Cell Mol. Biol. [Epub ahead of print].
http://dx.doi.org/10.1165/rcmb.2012-0011OC
PMid:22461431
Haugen A, Ryberg D, Mollerup S, Zienolddiny S, et al. (2000). Gene-environment interactions in human lung cancer. Toxicol. Lett. 112-113: 233-237.
http://dx.doi.org/10.1016/S0378-4274(99)00275-1
Hung RJ, McKay JD, Gaborieau V, Boffetta P, et al. (2008). A susceptibility locus for lung cancer maps to nicotinic acetylcholine receptor subunit genes on 15q25. Nature 452: 633-637.
http://dx.doi.org/10.1038/nature06885
PMid:18385738
Kiyohara C, Yoshimasu K, Takayama K and Nakanishi Y (2007). Lung cancer susceptibility: are we on our way to identifying a high-risk group? Future Oncol. 3: 617-627.
http://dx.doi.org/10.2217/14796694.3.6.617
PMid:18041914
Kollarova H, Janout V and Cizek L (2002). Epidemiology of lung cancer. Biomed. Pap. Med. Fac. Univ. Palacky Olomouc Czech. Repub. 146: 103-114.
http://dx.doi.org/10.5507/bp.2002.022
PMid:12572908
Lam WK (2005). Lung cancer in Asian women-the environment and genes. Respirology 10: 408-417.
http://dx.doi.org/10.1111/j.1440-1843.2005.00723.x
PMid:16135162
Law MH, Montgomery GW, Brown KM, Martin NG, et al. (2012). Meta-analysis combining new and existing data sets confirms that the TERT-CLPTM1L locus influences melanoma risk. J. Invest. Dermatol. 132: 485-487.
http://dx.doi.org/10.1038/jid.2011.322
PMid:21993562 PMCid:3258346
Liu Z, Li G, Wei S, Niu J, et al. (2010). Genetic variations in TERT-CLPTM1L genes and risk of squamous cell carcinoma of the head and neck. Carcinogenesis 31: 1977-1981.
http://dx.doi.org/10.1093/carcin/bgq179
PMid:20802237 PMCid:2966556
McKay JD, Hung RJ, Gaborieau V, Boffetta P, et al. (2008). Lung cancer susceptibility locus at 5p15.33. Nat. Genet. 40: 1404-1406.
http://dx.doi.org/10.1038/ng.254
PMid:18978790 PMCid:2748187
Rafnar T, Sulem P, Stacey SN, Geller F, et al. (2009). Sequence variants at the TERT-CLPTM1L locus associate with many cancer types. Nat. Genet. 41: 221-227.
http://dx.doi.org/10.1038/ng.296
PMid:19151717
Sanchez-Cespedes M (2009). Lung cancer biology: a genetic and genomic perspective. Clin. Transl. Oncol. 11: 263-269.
http://dx.doi.org/10.1007/s12094-009-0353-7
PMid:19451058
Sugimura H, Tao H, Suzuki M, Mori H, et al. (2011). Genetic susceptibility to lung cancer. Front Biosci. 3: 1463-1477.
http://dx.doi.org/10.2741/237
Thill PG, Goswami P, Berchem G and Domon B (2011). Lung cancer statistics in Luxembourg from 1981 to 2008. Bull. Soc. Sci. Med. Grand Duche Luxemb. 43-55.
PMid:22272445
Vossen RH, Aten E, Roos A and den Dunnen JT (2009). High-resolution melting analysis (HRMA): more than just sequence variant screening. Hum. Mutat. 30: 860-866.
http://dx.doi.org/10.1002/humu.21019
PMid:19418555
Weinrich SL, Pruzan R, Ma L, Ouellette M, et al. (1997). Reconstitution of human telomerase with the template RNA component hTR and the catalytic protein subunit hTRT. Nat. Genet. 17: 498-502.
http://dx.doi.org/10.1038/ng1297-498
PMid:9398860
Wu C, Hu Z, Yu D, Huang L, et al. (2009). Genetic variants on chromosome 15q25 associated with lung cancer risk in Chinese populations. Cancer Res. 69: 5065-5072.
http://dx.doi.org/10.1158/0008-5472.CAN-09-0081
PMid:19491260
“MicroRNA-199a-3p is downregulated in gastric carcinomas and modulates cell proliferation”, vol. 12, pp. 3038-3047, 2013.
, “Phenotypic correction and stable expression of factor VIII in hemophilia A mice by embryonic stem cell therapy”, vol. 12, pp. 1511-1521, 2013.
, “Potential role of Atp5g3 in epigenetic regulation of alcohol preference or obesity from a mouse genomic perspective”, vol. 12, pp. 3662-3674, 2013.
, “Relationship of common expression quantitative trait loci genes to the immune system”, vol. 12, pp. 6546-6553, 2013.
, “Target replacement strategy for selection of DNA aptamers against the Fc region of mouse IgG”, vol. 12, pp. 1399-1410, 2013.
, Chu TC, Twu KY, Ellington AD and Levy M (2006). Aptamer mediated siRNA delivery. Nucleic Acids Res. 34: e73.
http://dx.doi.org/10.1093/nar/gkl388
PMid:16740739 PMCid:1474074
Cox JC and Ellington AD (2001). Automated selection of anti-protein aptamers. Bioorg. Med. Chem. 9: 2525-2531.
http://dx.doi.org/10.1016/S0968-0896(01)00028-1
Ellington AD and Szostak JW (1990). In vitro selection of RNA molecules that bind specific ligands. Nature 346: 818-822.
http://dx.doi.org/10.1038/346818a0
PMid:1697402
Hall B, Arshad S, Seo K, Bowman C, et al. (2010). In vitro selection of RNA aptamers to a protein target by filter immobilization. Curr. Protoc. Nucleic Acid Chem. Chapter 9: Unit-27.
Keefe AD and Cload ST (2008). SELEX with modified nucleotides. Curr. Opin. Chem. Biol. 12: 448-456.
http://dx.doi.org/10.1016/j.cbpa.2008.06.028
PMid:18644461
Mairal T, Ozalp VC, Lozano SP, Mir M, et al. (2008). Aptamers: molecular tools for analytical applications. Anal. Bioanal. Chem. 390: 989-1007.
http://dx.doi.org/10.1007/s00216-007-1346-4
PMid:17581746
Mendonsa SD and Bowser MT (2004). In vitro selection of high-affinity DNA ligands for human IgE using capillary electrophoresis. Anal. Chem. 76: 5387-5392.
http://dx.doi.org/10.1021/ac049857v
PMid:15362896
Miyakawa S, Oguro A, Ohtsu T, Imataka H, et al. (2006). RNA aptamers to mammalian initiation factor 4G inhibit cap-dependent translation by blocking the formation of initiation factor complexes. RNA 12: 1825-1834.
http://dx.doi.org/10.1261/rna.2169406
PMid:16940549 PMCid:1581983
Nitsche A, Kurth A, Dunkhorst A, Panke O, et al. (2007). One-step selection of Vaccinia virus-binding DNA aptamers by MonoLEX. BMC Biotechnol. 7: 48.
http://dx.doi.org/10.1186/1472-6750-7-48
PMid:17697378 PMCid:1994675
Sakai N, Masuda H, Akitomi J, Yagi H, et al. (2008). RNA aptamers specifically interact with the Fc region of mouse immunoglobulin G. Nucleic Acids Symp. Ser. 487-488.
http://dx.doi.org/10.1093/nass/nrn247
PMid:18776466
Shamah SM, Healy JM and Cload ST (2008). Complex target SELEX. Acc. Chem. Res. 41: 130-138.
http://dx.doi.org/10.1021/ar700142z
PMid:18193823
Stoltenburg R, Reinemann C and Strehlitz B (2005). FluMag-SELEX as an advantageous method for DNA aptamer selection. Anal. Bioanal. Chem. 383: 83-91.
http://dx.doi.org/10.1007/s00216-005-3388-9
PMid:16052344
Tuerk C and Gold L (1990). Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249: 505-510.
http://dx.doi.org/10.1126/science.2200121
PMid:2200121
Yoshida Y, Sakai N, Masuda H, Furuichi M, et al. (2008). Rabbit antibody detection with RNA aptamers. Anal. Biochem. 375: 217-222.
http://dx.doi.org/10.1016/j.ab.2008.01.005
PMid:18252191
Yoshida Y, Horii K, Sakai N, Masuda H, et al. (2009). Antibody-specific aptamer-based PCR analysis for sensitive protein detection. Anal. Bioanal. Chem. 395: 1089-1096.
http://dx.doi.org/10.1007/s00216-009-3041-0
PMid:19705107
“Assessment of genetic diversity and variation of Robinia pseudoacacia seeds induced by short-term spaceflight based on two molecular marker systems and morphological traits”, vol. 11, pp. 4268-4277, 2012.
, Chen DP, Li L, Shen SH and Yang Q (2009). Optimization of SRAP-PCR system and M1 mutation molecular identification of M1 in Jatropha curcas L. Acta Agric. Nucl. Sin. 23: 209-213.
Gao WY, Fu RZ, Fan L, Zhao SP, et al. (2000). The effects of spaceflight on soluble protein, isoperoxidase, and genomic DNA in Ural Licorice (Glycyrrhiza uralensis Fisch). J. Plant Biol. 43: 94-98.
http://dx.doi.org/10.1007/BF03030501
Gao W, Li K, Yan S, Gao X, et al. (2009). Effects of space flight on DNA mutation and secondary metabolites of licorice (Glycyrrhiza uralensis Fisch.). Sci. China C Life Sci. 52: 977-981.
http://dx.doi.org/10.1007/s11427-009-0120-6
PMid:19911135
He JJ, Liu FZ, Chen YH, Yang WC, et al. (2010). Effect of space flight mutation on Eggplant and analysis of genetic diversity by SSR molecular marker. J. Nucl. Agric. Sci. 24: 460-465.
Li G and Quiros CF (2001). Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: its application to mapping and gene tagging in Brassica. Theor. Appl. Genet. 103: 455-461.
http://dx.doi.org/10.1007/s001220100570
Li Y, Liu M, Cheng Z and Sun Y (2007). Space environment induced mutations prefer to occur at polymorphic sites of rice genomes. Adv. Space Res. 40: 523-527.
http://dx.doi.org/10.1016/j.asr.2007.04.100
Lian C and Hogetsu T (2002). Development of microsatellite markers in black locust (Robinia pseudoacacia) using a dual-suppression-PCR technique. Mol. Ecol. Notes 2: 211-213.
Lian C, Oishi R, Miyashita N and Hogetsu T (2004). High somatic instability of a microsatellite locus in a clonal tree, Robinia pseudoacacia. Theor. Appl. Genet. 108: 836-841.
http://dx.doi.org/10.1007/s00122-003-1500-0
PMid:14625672
Liu L, Van Zanten L, Shu QY and Maluszynski M (2004). Officially released mutant varieties in China. Mutat. Breed. Rev. 14: 1-64.
Liu M, Li JG, Wang YL, Zhang Z, et al. (1999). Preliminary study on peroxidase isoenzyme detection and RAPD molecular verification for sweet pepper 87-2 carried by a recoverable satellite. Acta Agric. Nucl. Sin. 13: 291-294.
Lu JY, Zhang WL, Xue H, Pan Y, et al. (2010). Changes in AFLP and SSR DNA polymorphisms induced by short-term space flight of rice seeds. Biol. Plant. 54: 112-116.
http://dx.doi.org/10.1007/s10535-010-0016-0
Mashinsky AL and Nechitailo GS (2001). Results and prospects of studying the gravitationally sensitive systems of plants under conditions of space flight. Cosmic Res. 39: 317-327.
http://dx.doi.org/10.1023/A:1017993528116
McCouch SR, Teytelman L, Xu Y, Lobos KB, et al. (2002). Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res. 9: 199-207.
http://dx.doi.org/10.1093/dnares/9.6.199
PMid:12597276
Mishima K, Hirao T, Urano S, Watanabe A, et al. (2009). Isolation and characterization of microsatellite markers from Robinia pseudoacacia L. Mol. Ecol. Resour. 9: 850-852.
http://dx.doi.org/10.1111/j.1755-0998.2008.02306.x
PMid:21564766
Nechitailo GS, Lu JY, Xue H, Pan Y, et al. (2005). Influence of long term exposure to space flight on tomato seeds. Adv. Space Res. 36: 1329-1333.
http://dx.doi.org/10.1016/j.asr.2005.06.043
Nei M (1973). Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. U. S. A. 70: 3321-3323.
http://dx.doi.org/10.1073/pnas.70.12.3321
PMid:4519626 PMCid:427228
Normile D and Yimin D (2002). Space science. Science emerges from shadows of China's space program. Science 296: 1788-1791.
http://dx.doi.org/10.1126/science.296.5574.1788
PMid:12052934
Powell W, Machray GC and Provan J (1996). Polymorphism revealed by simple sequence repeats. Trends Plant Sci. 1: 215-222.
Stringer JW and Carpenter SB (1986). Energy yield of black locust biomass fuel. Forest Sci. 32: 1049-1057.
Sun BJ, Li ZX, Luo SB, Li ZL, et al. (2010). Induced effects of space flight on Eggplant (Solanum melongena L.) and AFLP analysis on mutants. Plant Physiol. Comm. 46: 1205-1210.
Sun F, Yang MS, Zhang J and Gu JT (2009). ISSR analysis of genetic diversity of Robinia pseudoacacia populations. J. Plant Genet. Res. 10: 91-96.
Surles SE, Hamrick JL and Bongarten BC (1989). Allozyme variation in black locust (Robinia pseudoacacia). Can. J. Forest Res. 19: 471-479.
http://dx.doi.org/10.1139/x89-073
The People's Republic of China Ministry of Agriculture (2002). New Plant Varieties for Distinctness, Uniformity and Stability Testing Guidelines of China. China Agriculture Press, Beijing.
Wang WT, Chan CG, Ni DP and Wang ZF (2009). Space flight effects analysis of SP2 Salvia miltiorrhiza Bge using SRAP marker. Acta Agric. Nucl. Sin. 23: 758-761.
Wu Y, Yang DY, Tu PF, Tian YZ, et al. (2011). Genetic differentiation induced by spaceflight treatment of Cistanche deserticola and identification of inter-simple sequence repeat markers associated with its medicinal constituent contents. Adv. Space Res. 47: 591-599.
http://dx.doi.org/10.1016/j.asr.2010.10.010
Xiao WM, Yang QY, Chen ZQ, Wang H, et al. (2009). Blast-resistance inheritance of space-induced rice lines and their genomic polymorphism by microsatellite markers. Agr. Sci. China 8: 387-393.
http://dx.doi.org/10.1016/S1671-2927(08)60223-0
Xie LB, Guo YH, Meng FJ and Liu LX (2010). Molecular detection of genome DNA variation induced by space environment in Sweet Pepper (Capsicum annuum L.). Acta Agric. Nucl. Sin. 24: 254-258.
Yi JC, Zhuang CX, Yao J, Wang H, et al. (2002). DNA polymorphic analysis of rice mutation induced by space flight with molecular markers. Acta Biophys. Sin. 18: 478-483.
Yuan CQ, Li YF, Yang NN, Dai L, et al. (2011). Optimization of SRAP-PCR system and selection of primers for Robinia pseudoacacia L. Mol. Plant Breed. 9: 1182-1188.
Zhou GY, Hong YB, Lin KY, Li SX, et al. (2007). Study on breeding of space mutants in peanut and analysis of genetic diversity based on SSR marker. Chin. J. Oil. Crop Sci. 29: 238-241.
“Genetic variation and balancing selection at MHC class II exon 2 in cultured stocks and wild populations of orange-spotted grouper (Epinephelus coioides)”, vol. 11, pp. 3869-3881, 2012.
,
Alcaide M, Edwards SV, Negro JJ, Serrano D, et al. (2008). Extensive polymorphism and geographical variation at a positively selected MHC class II B gene of the lesser kestrel (Falco naumanni). Mol. Ecol. 17: 2652-2665.
http://dx.doi.org/10.1111/j.1365-294X.2008.03791.x
PMid:18489548
Anisimova M, Nielsen R and Yang Z (2003). Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites. Genetics 164: 1229-1236.
PMid:12871927 PMCid:1462615
Anmarkrud JA, Johnsen A, Bachmann L and Lifjeld JT (2010). Ancestral polymorphism in exon 2 of bluethroat (Luscinia svecica) MHC class II B genes. J. Evol. Biol. 23: 1206-1217.
http://dx.doi.org/10.1111/j.1420-9101.2010.01999.x
PMid:20456568
Axtner J and Sommer S (2007). Gene duplication, allelic diversity, selection processes and adaptive value of MHC class II DRB genes of the bank vole, Clethrionomys glareolus. Immunogenetics 59: 417-426.
http://dx.doi.org/10.1007/s00251-007-0205-y
PMid:17351770
Beaumont MA and Balding DJ (2004). Identifying adaptive genetic divergence among populations from genome scans. Mol. Ecol. 13: 969-980.
http://dx.doi.org/10.1111/j.1365-294X.2004.02125.x
PMid:15012769
Bernatchez L and Landry C (2003). MHC studies in nonmodel vertebrates: what have we learned about natural selection in 15 years? J. Evol. Biol. 16: 363-377.
http://dx.doi.org/10.1046/j.1420-9101.2003.00531.x
PMid:14635837
Brown JL and Eklund A (1994). Kin recognition and the major histocompatibility complex: an integrative review. Am. Nat. 143: 435-461.
http://dx.doi.org/10.1086/285612
Brown JH, Jardetzky TS, Gorga JC, Stern LJ, et al. (1993). Three-dimensional structure of the human class II histocompatibility antigen HLA-DR1. Nature 364: 33-39.
http://dx.doi.org/10.1038/364033a0
PMid:8316295
Clarke B and Kirby DR (1966). Maintenance of histocompatibility polymorphisms. Nature 211: 999-1000.
http://dx.doi.org/10.1038/211999a0
PMid:6007869
Davies CJ, Andersson L, Mikko S, Ellis SA, et al. (1997). Nomenclature for factors of the BoLA system, 1996: report of the ISAG BoLA Nomenclature Committee. Anim. Genet. 28: 159-168.
http://dx.doi.org/10.1111/j.1365-2052.1997.00106.x
Dengjel J, Schoor O, Fischer R, Reich M, et al. (2005). Autophagy promotes MHC class II presentation of peptides from intracellular source proteins. Proc. Natl. Acad. Sci. U. S. A. 102: 7922-7927.
http://dx.doi.org/10.1073/pnas.0501190102
PMid:15894616 PMCid:1142372
Ekblom R, Saether SA, Jacobsson P, Fiske P, et al. (2007). Spatial pattern of MHC class II variation in the great snipe (Gallinago media). Mol. Ecol. 16: 1439-1451.
http://dx.doi.org/10.1111/j.1365-294X.2007.03281.x
PMid:17391268
Excoffier L, Laval G and Schneider S (2005). Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1: 47-50.
PMCid:2658868
Goudet J (2002). Fstat, A Program to Estimate and Test Gene Diversities and Fixation Indices (Version 2.9.3.2). Available at [http://www2.unil.ch/popgen/softwares/fstat.htm]. Accessed February 8, 2012.
Grimholt U, Larsen S, Nordmo R, Midtlyng P, et al. (2003). MHC polymorphism and disease resistance in Atlantic salmon (Salmo salar); facing pathogens with single expressed major histocompatibility class I and class II loci. Immunogenetics 55: 210-219.
http://dx.doi.org/10.1007/s00251-003-0567-8
PMid:12811427
Hall TA (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids Symp. Ser. 41: 95-98.
Hauswaldt JS, Stuckas H, Pfautsch S and Tiedemann R (2007). Molecular characterization of MHC class II in a nonmodel anuran species, the fire-bellied toad Bombina bombina. Immunogenetics 59: 479-491.
http://dx.doi.org/10.1007/s00251-007-0210-1
PMid:17406862
Hedrick PW (1999). Perspective: highly variable loci and their interpretation in evolution and conservation. Evolution 53: 313-318.
http://dx.doi.org/10.2307/2640768
Hill AV (1999). The immunogenetics of resistance to malaria. Proc. Assoc. Am. Physicians 111: 272-277.
http://dx.doi.org/10.1046/j.1525-1381.1999.99234.x
PMid:10417733
Hill AV, Allsopp CE, Kwiatkowski D, Anstey NM, et al. (1991). Common west African HLA antigens are associated with protection from severe malaria. Nature 352: 595-600.
http://dx.doi.org/10.1038/352595a0
PMid:1865923
Hughes AL and Nei M (1988). Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection. Nature 335: 167-170.
http://dx.doi.org/10.1038/335167a0
PMid:3412472
Hughes AL and Yeager M (1998). Natural selection at major histocompatibility complex loci of vertebrates. Annu. Rev. Genet. 32: 415-435.
http://dx.doi.org/10.1146/annurev.genet.32.1.415
PMid:9928486
Hung PH, Thuy TTN, Supawadee P and Uthairat N (2009). Microsatellites revealed no genetic differentiation between hatchery and contemporary wild populations of striped catfish, Pangasianodon hypophthalmus (Sauvage 1878) in Vietnam. Aquaculture 291: 154-160.
http://dx.doi.org/10.1016/j.aquaculture.2009.03.017
Jones EY, Fugger L, Strominger JL and Siebold C (2006). MHC class II proteins and disease: a structural perspective. Nat. Rev. Immunol. 6: 271-282.
http://dx.doi.org/10.1038/nri1805
PMid:16557259
Jordan WC and Bruford MW (1998). New perspectives on mate choice and the MHC. Heredity 81: 239-245.
http://dx.doi.org/10.1038/sj.hdy.6884280
PMid:9800367
Karaiskou N, Moran P, Georgitsakis G, Abatzopoulos TJ, et al. (2010). High allelic variation of MHC class II alpha antigen and the role of selection in wild and cultured Sparus aurata populations. Hydrobiologia 638: 11-20.
http://dx.doi.org/10.1007/s10750-009-0001-9
Klein J (1986). Natural History of the Major Histocompatibility Complex. Wiley, New York.
Nei M and Gojobori T (1986). Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3: 418-426.
PMid:3444411
Piertney SB and Oliver MK (2006). The evolutionary ecology of the major histocompatibility complex. Heredity 96: 7-21.
PMid:16094301
Rokas A, Atkinson RJ, Webster L, Csoka G, et al. (2003). Out of Anatolia: longitudinal gradients in genetic diversity support an eastern origin for a circum-Mediterranean oak gallwasp Andricus quercustozae. Mol. Ecol. 12: 2153- 2174.
http://dx.doi.org/10.1046/j.1365-294X.2003.01894.x
PMid:12859636
Rozas J, Sanchez-Del Barrio JC, Messeguer X and Rozas R (2003). DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.
http://dx.doi.org/10.1093/bioinformatics/btg359
PMid:14668244
Schad J, Dechmann DK, Voigt CC and Sommer S (2011). MHC class II DRB diversity, selection pattern and population structure in a neotropical bat species, Noctilio albiventris. Heredity 107: 115-126.
http://dx.doi.org/10.1038/hdy.2010.173
PMid:21245894 PMCid:3178406
Strand T, Westerdahl H, Hoglund J, Alatalo V, et al. (2007). The Mhc class II of the Black grouse (Tetrao tetrix) consists of low numbers of B and Y genes with variable diversity and expression. Immunogenetics 59: 725-734.
http://dx.doi.org/10.1007/s00251-007-0234-6
PMid:17653538
Summers K, Roney KE, da Silva J, Capraro G, et al. (2009). Divergent patterns of selection on the DAB and DXB MHC class II loci in Xiphophorus fishes. Genetica 135: 379-390.
http://dx.doi.org/10.1007/s10709-008-9284-4
PMid:18600302
Tamura K, Peterson D, Peterson N, Stecher G, et al. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28: 2731-2739.
http://dx.doi.org/10.1093/molbev/msr121
PMid:21546353 PMCid:3203626
Tong JC, Bramson J, Kanduc D, Chow S, et al. (2006). Modeling the bound conformation of Pemphigus vulgaris-associated peptides to MHC Class II DR and DQ alleles. Immunome Res. 2: 1.
http://dx.doi.org/10.1186/1745-7580-2-1
PMid:16426456 PMCid:1395305
Wang L, Meng Z, Liu X, Zhang Y, et al. (2011). genetic diversity and differentiation of the orange-spotted grouper (Epinephelus coioides) between and within cultured stocks and wild populations inferred from microsatellite DNA Analysis. Int. J. Mol. Sci. 12: 4378-4394.
http://dx.doi.org/10.3390/ijms12074378
PMid:21845084 PMCid:3155357
Westerdahl H, Wittzell H, von Schantz T and Bensch S (2004). MHC class I typing in a songbird with numerous loci and high polymorphism using motif-specific PCR and DGGE. Heredity 92: 534-542.
http://dx.doi.org/10.1038/sj.hdy.6800450
PMid:15162116
Xu TJ, Sun YN and Chen SL (2010). Allelic variation, balancing selection and positive selected sites detected from MHC class Ia gene of olive flounder. Genetica 138: 1251-1259.
http://dx.doi.org/10.1007/s10709-010-9524-2
PMid:21110065
Yang Z (1997). PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13: 555-556.
PMid:9367129
Yang Z, Wong WS and Nielsen R (2005). Bayes empirical bayes inference of amino acid sites under positive selection. Mol. Biol. Evol. 22: 1107-1118.
http://dx.doi.org/10.1093/molbev/msi097
PMid:15689528
“Novel and recurrent COL2A1 mutations in Chinese patients with spondyloepiphyseal dysplasia”, vol. 11, pp. 4130-4137, 2012.
,
Bar-Yosef U, Ohana E, Hershkovitz E, Perlmuter S, et al. (2004). X-linked spondyloepiphyseal dysplasia tarda: a novel SEDL mutation in a Jewish Ashkenazi family and clinical intervention considerations. Am. J. Med. Genet. A 125A: 45-48.
http://dx.doi.org/10.1002/ajmg.a.20435
PMid:14755465
Borochowitz ZU, Scheffer D, Adir V, Dagoneau N, et al. (2004). Spondylo-epi-metaphyseal dysplasia (SEMD) matrilin 3 type: homozygote matrilin 3 mutation in a novel form of SEMD. J. Med. Genet. 41: 366-372.
http://dx.doi.org/10.1136/jmg.2003.013342
PMid:15121775 PMCid:1735768
Byers PH, Wallis GA and Willing MC (1991). Osteogenesis imperfecta: translation of mutation to phenotype. J. Med. Genet. 28: 433-442.
http://dx.doi.org/10.1136/jmg.28.7.433
PMid:1895312 PMCid:1016951
Faiyaz ul Haque M, King LM, Krakow D, Cantor RM, et al. (1998). Mutations in orthologous genes in human spondyloepimetaphyseal dysplasia and the brachymorphic mouse. Nat. Genet. 20: 157-162.
Fiedler J, Bergmann C and Brenner RE (2003). X-linked spondyloepiphyseal dysplasia tarda: molecular cause of a heritable disorder associated with early degenerative joint disease. Acta Orthop. Scand. 74: 737-741.
http://dx.doi.org/10.1080/00016470310018298
PMid:14763708
Freisinger P, Ala-Kokko L, LeGuellec D, Franc S, et al. (1994). Mutation in the COL2A1 gene in a patient with hypochondrogenesis. Expression of mutated COL2A1 gene is accompanied by expression of genes for type I procollagen in chondrocytes. J. Biol. Chem. 269: 13663-13669.
PMid:8175802
Gleghorn L, Ramesar R, Beighton P and Wallis G (2005). A mutation in the variable repeat region of the aggrecan gene (AGC1) causes a form of spondyloepiphyseal dysplasia associated with severe, premature osteoarthritis. Am. J. Hum. Genet. 77: 484-490.
http://dx.doi.org/10.1086/444401
PMid:16080123 PMCid:1226213
Jung SC, Mathew S, Li QW, Lee YJ, et al. (2004). Spondyloepiphyseal dysplasia congenita with absent femoral head. J. Pediatr. Orthop. B 13: 63-69.
PMid:15076581
Kannu P, Bateman J and Savarirayan R (2012). Clinical phenotypes associated with type II collagen mutations. J. Paediatr. Child Health 48: E38-E43.
http://dx.doi.org/10.1111/j.1440-1754.2010.01979.x
PMid:21332586
Körkkö J, Cohn DH, Ala-Kokko L, Krakow D, et al. (2000). Widely distributed mutations in the COL2A1 gene produce achondrogenesis type II/hypochondrogenesis. Am. J. Med. Genet. 92: 95-100.
http://dx.doi.org/10.1002/(SICI)1096-8628(20000515)92:2<95::AID-AJMG3>3.0.CO;2-9
Liao EY, Peng YQ, Zhou HD, Mackie EJ, et al. (2004). Gene symbol: WISP3. Disease: spondyloepihyseal dysplasia tarda with progressive arthropathy. Hum. Genet. 115: 174.
PMid:15300987
Nishimura G, Haga N, Kitoh H, Tanaka Y, et al. (2005). The phenotypic spectrum of COL2A1 mutations. Hum. Mutat. 26: 36-43.
http://dx.doi.org/10.1002/humu.20179
PMid:15895462
Nishimura G, Dai J, Lausch E, Unger S, et al. (2010). Spondylo-epiphyseal dysplasia, Maroteaux type (pseudo-Morquio syndrome type 2), and parastremmatic dysplasia are caused by TRPV4 mutations. Am. J. Med. Genet. A 152A: 1443-1449.
PMid:20503319
Spranger J, Winterpacht A and Zabel B (1994). The type II collagenopathies: a spectrum of chondrodysplasias. Eur. J. Pediatr. 153: 56-65.
PMid:8157027
Thiele H, Sakano M, Kitagawa H, Sugahara K, et al. (2004). Loss of chondroitin 6-O-sulfotransferase-1 function results in severe human chondrodysplasia with progressive spinal involvement. Proc. Natl. Acad. Sci. U. S. A. 101: 10155- 10160.
http://dx.doi.org/10.1073/pnas.0400334101
PMid:15215498 PMCid:454181
Tiller GE, Polumbo PA, Weis MA, Bogaert R, et al. (1995). Dominant mutations in the type II collagen gene, COL2A1, produce spondyloepimetaphyseal dysplasia, Strudwick type. Nat. Genet. 11: 87-89.
http://dx.doi.org/10.1038/ng0995-87
PMid:7550321
Unger S, Lausch E, Rossi A, Megarbane A, et al. (2010). Phenotypic features of carbohydrate sulfotransferase 3 (CHST3) deficiency in 24 patients: congenital dislocations and vertebral changes as principal diagnostic features. Am. J. Med. Genet. A 152A: 2543-2549.
http://dx.doi.org/10.1002/ajmg.a.33641
PMid:20830804
Williams CJ, Rock M, Considine E, McCarron S, et al. (1995). Three new point mutations in type II procollagen (COL2A1) and identification of a fourth family with the COL2A1 Arg519→Cys base substitution using conformation sensitive gel electrophoresis. Hum. Mol. Genet. 4: 309-312.
http://dx.doi.org/10.1093/hmg/4.2.309
PMid:7757086
Xia X, Cui Y, Huang Y, Pan L, et al. (2007). A first familial G504S mutation of COL2A1 gene results in distinctive spondyloepiphyseal dysplasia congenita. Clin. Chim. Acta 382: 148-150.
http://dx.doi.org/10.1016/j.cca.2007.04.005
PMid:17509551
Zhang Z, He JW, Fu WZ, Zhang CQ, et al. (2011). Identification of three novel mutations in the COL2A1 gene in four unrelated Chinese families with spondyloepiphyseal dysplasia congenita. Biochem. Biophys. Res. Commun. 413: 504-508.
http://dx.doi.org/10.1016/j.bbrc.2011.08.090
PMid:21924244
“Comparison of complete mitochondrial DNA control regions among five Asian freshwater turtle species and their phylogenetic relationships”, vol. 10, pp. 1545-1557, 2011.
, Aquadro CF and Greenberg BD (1983). Human mitochondrial DNA variation and evolution: analysis of nucleotide sequences from seven individuals. Genetics 103: 287-312.
PMid:6299878 PMCid:1219980
Avise JC, Bowen BW, Lamb T, Meylan AB, et al. (1992). Mitochondrial DNA evolution at a turtle’s pace: evidence for low genetic variability and reduced microevolutionary rate in the Testudines. Mol. Biol. Evol. 9: 457-473.
PMid:1584014
Barth D, Bernhard D, Fritzsch G and Fritz U (2004). The freshwater turtle genus Mauremys (Testudines, Geoemydidae) - a textbook example of an east-west disjunction or a taxonomic misconcept? Zoolog. Scripta 33: 213-221.
doi:10.1111/j.0300-3256.2004.00150.x
Cann RL, Brown WM and Wilson AC (1984). Polymorphic sites and the mechanism of evolution in human mitochondrial DNA. Genetics 106: 479-499.
PMid:6323246 PMCid:1224251
Crochet PA and Desmarais E (2000). Slow rate of evolution in the mitochondrial control region of gulls (Aves: Laridae). Mol. Biol. Evol. 17: 1797-1806.
PMid:11110895
Desalle R, Freedman T, Prager EM and Wilson AC (1987). Tempo and mode of sequence evolution in mitochondrial DNA of Hawaiian Drosophila. J. Mol. Evol. 26: 157-164.
doi:10.1007/BF02111289
PMid:3125333
Doda JN, Wright CT and Clayton DA (1981). Elongation of displacement-loop strands in human and mouse mitochondrial DNA is arrested near specific template sequences. Proc. Natl. Acad. Sci. U. S. A. 78: 6116-6120.
doi:10.1073/pnas.78.10.6116
Feldman CR and Parham JF (2004). Molecular systematics of old world stripe-necked turtles (Testudines: Mauremys). Asiat. Herpetol. Res. 10: 28-37.
Fong JJ, Parham JF, Shi H and Stuart BL (2007). A genetic survey of heavily exploited, endangered turtles: caveats on the conservation value of trade animals. Anim. Conserv. 10: 452-460.
doi:10.1111/j.1469-1795.2007.00131.x
Fumagalli L, Taberlet P, Favre L and Hausser J (1996). Origin and evolution of homologous repeated sequences in the mitochondrial DNA control region of shrews. Mol. Biol. Evol. 13: 31-46.
PMid:8583904
Hirayama R, Kaneko N and Okazaki H (2007). Ocadia nipponica, a new species of aquatic turtle (Testudines: Testudinoidea: Geoemydidae) from the Middle Pleistocene of Chiba Prefecture, central Japan. Paleontol. Res. 11: 1-19.
doi:10.2517/1342-8144(2007)11[1:ONANSO]2.0.CO;2
Hoelzel AR, Hancock JM and Dover GA (1993). Generation of VNTRs and heteroplasmy by sequence turnover in the mitochondrial control region of two elephant seal species. J. Mol. Evol. 37: 190-197.
doi:10.1007/BF02407355
PMid:8411208
Honda M, Yasukawa Y and Ota H (2002). Phylogeny of Eurasian freshwater turtles of the genus Mauremys Gray 1869 (Testudines), with special reference to a close affinity of Mauremys japonica with Chinemys reevesii. J. Zool. Systemat. Evol. Res. 40: 195-200.
doi:10.1046/j.1439-0469.2002.00176.x
Lamb T, Lydeard C, Walker RB and Gibbons JW (1994). Molecular systematics of map turtles (Graptemys): a comparison of mitochondrial restriction site versus sequence data. Syst. Biol. 43: 543-559.
doi:10.1093/sysbio/43.4.543
Li XS, Nie LW, Wang L, Xiong L, et al. (2010). The mitochondrial genome complete sequence and organization of the pig-nosed turtle Carettochelys insculpta (Testudines, Carettochelyidae) and its phylogeny position in Testudines. Amphibia-Reptilia 31: 541-551.
doi:10.1163/017353710X530203
Peng QL, Nie LW and Pu YG (2006). Complete mitochondrial genome of Chinese big-headed turtle, Platysternon megacephalum, with a novel gene organization in vertebrate mtDNA. Gene 380: 14-20.
doi:10.1016/j.gene.2006.04.001
PMid:16842936
Posada D and Crandall KA (1998). MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818.
doi:10.1093/bioinformatics/14.9.817
PMid:9918953
Rand DM (1994). Concerted evolution and RAPping in mitochondrial VNTRs and the molecular geography of cricket populations. EXS 69: 227-245.
PMid:7994109
Rand DM and Harrison RG (1989). Molecular population genetics of mtDNA size variation in crickets. Genetics 121: 551-569.
PMid:2565855 PMCid:1203640
Randi E and Lucchini V (1998). Organization and evolution of the mitochondrial DNA control region in the avian genus Alectoris. J. Mol. Evol. 47: 449-462.
doi:10.1007/PL00006402
PMid:9767690
Rhodin AGJ, van Dijk PP and Parham JF (2008). Turtles of the World: Annotated Checklist of Taxonomy and Synonymy. Chelonian Research Foundation, Lunenburg.
Ronquist F and Huelsenbeck JP (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
doi:10.1093/bioinformatics/btg180
PMid:12912839
Ruokonen M and Kvist L (2002). Structure and evolution of the avian mitochondrial control region. Mol. Phylogenet. Evol. 23: 422-432.
doi:10.1016/S1055-7903(02)00021-0
Spinks PQ, Bradley SH, Iverson JB and McCord WP (2004). Phylogenetic hypotheses for the turtle family Geoemydidae. Mol. Phylogenet. Evol. 32: 164-182.
doi:10.1016/j.ympev.2003.12.015
PMid:15186805
Stuart BL and Parham JF (2007). Recent hybrid origin of three rare Chinese turtles. Conserv. Genet. 8: 169-175.
doi:10.1007/s10592-006-9159-0
Su Y (2005). Conserved and heteroplasmy on mitochondrial DNA control region in animal. Sichuan J. Zoo. 24: 669-672.
Swofford DL (2002). PAUP*: Phylogenenc Analysis using Parsimony (*and Other Methods), Version 4.0b l0. Sinauer Associates, Sunderland.
Tamura K and Nei M (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10: 512-526.
PMid:8336541
Tamura K, Dudley J, Nei M and Kumar S (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24: 1596-1599.
doi:10.1093/molbev/msm092
PMid:17488738
Vigilant L, Stoneking M, Harpending H, Hawkes K, et al. (1991). African populations and the evolution of human mitochondrial DNA. Science 253: 1503-1507.
doi:10.1126/science.1840702
PMid:1840702
Xia X and Lemey P (2009). Assessing Substitution Saturation with DAMBE. 2nd edn. In: The Phylogenetic Handbook: A Practical Approach to DNA and Protein Phylogeny (Lemey P, Salemi M and Vandamme A-M, eds.). Cambridge University Press, Cambridge, 615-630.
Xiao B, Ma F, Sun Y and Li QW (2006). Comparative analysis of complete mitochondrial DNA control region of four species of Strigiformes. Yi. Chuan Xue. Bao. 33: 965-974.
PMid:17112967
Yan L, Zhang Y, Wang N and Zhang L (2008). Comparison of mitochondrial control region sequences between Chelydridae and Platysternidae. Zool. Res. 29: 127-133.
doi:10.3724/SP.J.1141.2008.00127
Zardoya R and Meyer A (1998). Cloning and characterization of a microsatellite in the mitochondrial control region of the African side-necked turtle, Pelomedusa subrufa. Gene 216: 149-153.
doi:10.1016/S0378-1119(98)00332-1
Zhang L, Nie L, Cao C and Zhan Y (2008). The complete mitochondrial genome of the Keeled box turtle Pyxidea mouhotii and phylogenetic analysis of major turtle groups. J. Genet. Genom. 35: 33-40.
doi:10.1016/S1673-8527(08)60005-3
Zhang YY, Nie LW, Huang YQ and Pu YG (2009). The mitochondrial DNA control region comparison studies of four hinged turtles and its phylogentic significance of the genus Cuora sensu lato (Testudinata: Geoemydidae). Genes Genom. 31: 349-359.
doi:10.1007/BF03191253
Zhao EM and Zhou T (2004). Atlas for Identification of Turtles and Tortoises. China Agriculture Press, Beijing.
Zhu SH, Zheng WJ, Zou JX and Yang YC (2007). Mitochondrial DNA control region structure and molecular phylogenetic relationship of Carangidae. Zool. Res. 28: 606-614.
Zink RM and Blackwell RC (1998). Molecular systematics and biogeography of aridland gnatcatchers (genus Polioptila) and evidence supporting species status of the California gnatcatcher (Polioptila california). Mol. Phylogenet. Evol. 9: 26-32.
doi:10.1006/mpev.1997.0444
PMid:9479690
“Development and characterization of 32 microsatellite loci in the giant grouper Epinephelus lanceolatus (Serranidae)”, vol. 10. pp. 4006-4011, 2011.
,
Chistiakov DA, Hellemans B and Volckaert FAM (2006). Microsatellites and their genomic distribution, evolution, function and applications: A review with special reference to fish genetics. Aquaculture 255: 1-29.
http://dx.doi.org/10.1016/j.aquaculture.2005.11.031
Dong HY, Zeng LX, Duan D and Zhang HF (2010). Growth hormone and two forms of insulin-like growth factors I in the giant grouper (Epinephelus lanceolatus): molecular cloning and characterization of tissue distribution. Fish Physiol. Biochem. 36: 201-212.
http://dx.doi.org/10.1007/s10695-008-9231-4
PMid:20467861
Heemstra PC and Randall JE (1993). Groupers of the World (Family Serranidae, Subfamily Epinephelidae): An Annotated and Illustrated Catalogue of the Grouper, Rockcod, Hind, Coral Grouper and Lyretail Species Known to Date. FAO, Rome.
Hseu JR, Hwang PP and Ting YY (2004). Morphometric model and laboratory analysis of intracohort cannibalism in giant grouper Epinephelus lanceolatus fry. Fish. Sci. 70: 482-486.
http://dx.doi.org/10.1111/j.1444-2906.2004.00829.x
Kalinowski ST, Taper ML and Marshall TC (2007). Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Mol. Ecol. 16: 1099-1106.
http://dx.doi.org/10.1111/j.1365-294X.2007.03089.x
PMid:17305863
Morris AV, Roberts CM and Hawkins JP (2000). The threatened status of groupers (Epinephinae). Biodivers. Conserv. 9: 919-942.
http://dx.doi.org/10.1023/A:1008996002822
Nelson J (1994). Fishes of the World. John Wiley and Sons, New York.
Rice WR (1989). Analyzing tables of statistical tests. Evolution 43: 223-225.
http://dx.doi.org/10.2307/2409177
Rousset F (2008). Genepop 007: a complete reimplementation of the genepop software for Windows and Linux. Mol. Ecol. Resour. 8: 103-106.
http://dx.doi.org/10.1111/j.1471-8286.2007.01931.x
PMid:21585727
Rozen S and Skaletsky HJ (2000). Primer 3 on the WWW for General Users and for Biologist Programmers. In: Bioinformatics Methods and Protocols: Methods in Molecular Biology (Krawets S and Misener S, eds.). Humana Press, Totowa, 365-386.
PMid:10547847
Van Oosterhout C, Hutchinson WF, Wills DPM and Shipley P (2004). MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4: 535-538.
http://dx.doi.org/10.1111/j.1471-8286.2004.00684.x
Zane L, Bargelloni L and Patarnello T (2002). Strategies for microsatellite isolation: a review. Mol. Ecol. 11: 1-16.
http://dx.doi.org/10.1046/j.0962-1083.2001.01418.x
PMid:11903900
Zeng HS, Ding SX, Wang J and Su YQ (2008). Characterization of eight polymorphic microsatellite loci for the giant grouper (Epinephelus lanceolatus Bloch). Mol. Ecol. Resour. 8: 805-807.
http://dx.doi.org/10.1111/j.1755-0998.2007.02070.x
PMid:21585897
“Differential gene expression and functional analysis of pit cells from regenerating rat liver”, vol. 10, pp. 678-692, 2011.
, Bouwens L and Wisse E (1992). Pit cells in the liver. Liver 12: 3-9.
doi:10.1111/j.1600-0676.1992.tb00547.x
Clavien PA (2008). Liver regeneration: a spotlight on the novel role of platelets and serotonin. Swiss Med. Wkly. 138: 361-370.
PMid:18587687
Diehl AM and Rai R (1996). Review: regulation of liver regeneration by pro-inflammatory cytokines. J. Gastroenterol. Hepatol. 11: 466-470.
doi:10.1111/j.1440-1746.1996.tb00292.x
PMid:8743919
Dong Z, Wei H, Sun R and Tian Z (2007). The roles of innate immune cells in liver injury and regeneration. Cell Mol. Immunol. 4: 241-252.
PMid:17764614
Francavilla A, Vujanovic NL, Polimeno L, Azzarone A, et al. (1997). The in vivo effect of hepatotrophic factors augmenter of liver regeneration, hepatocyte growth factor, and insulin-like growth factor-II on liver natural killer cell functions. Hepatology 25: 411-415.
PMid:9021955 PMCid:2993082
Gao B, Radaeva S and Park O (2009). Liver natural killer and natural killer T cells: immunobiology and emerging roles in liver diseases. J. Leukoc. Biol. 86: 513-528.
Griffini P, Smorenburg SM, Vogels IM, Tigchelaar W, et al. (1996). Kupffer cells and pit cells are not effective in the defense against experimentally induced colon carcinoma metastasis in rat liver. Clin. Exp. Metastasis 14: 367-380.
doi:10.1007/BF00123396
PMid:18590573 PMCid:2481271
Guo W, Cai C, Wang C, Zhao L, et al. (2008). A preliminary analysis of genome structure and composition in Gossypium hirsutum. B. M. C. Genomics 9: 314.
doi:10.1186/1471-2164-9-314
He CX, Lai XF, Wang L, Jin YF, et al. (2009). Isolation, purification and identification of pit cells in rat liver. Henan Sci. 27: 1072-1076.
Higgins GM and Anderson RM (1931). Experimental pathology of the liver I. Restoration of the liver of the white rat following partial surgical removal. Arch. Pathol. 12: 186-202.
Kmiec Z (2001). Cooperation of liver cells in health and disease. Adv. Anat. Embryol. Cell Biol. 161: III-151.
PMid:17376245 PMCid:1847526
Kube DM, Savci-Heijink CD, Lamblin AF, Kosari F, et al. (2007). Optimization of laser capture microdissection and RNA amplification for gene expression profiling of prostate cancer. BMC Mol. Biol. 8: 25.
doi:10.1186/1471-2199-8-25
Li H, Chen X, Zhang F, Ma J, et al. (2007). Expression patterns of the cell junction-associated genes during rat liver regeneration. J. Genet. Genomics 34: 892-908.
doi:10.1016/S1673-8527(07)60101-5
PMid:15057602
Nakatani K, Kaneda K, Seki S and Nakajima Y (2004). Pit cells as liver-associated natural killer cells: morphology and function. Med. Electron. Microsc. 37: 29-36.
doi:10.1007/s00795-003-0229-9
PMid:1371051
Norton JN (1992). Total RNA isolation by a rapid centrifugation method. Am. Biotechnol. Lab. 10: 41.
Paschos K, Canovas D and Bird N (2008). Malignant cell interactions with cells of the hepatic sinusoids mediate primarily the development of colorectal cancer liver metastasis. Ann. Gastroenterol. 21: 98-108.
PMid:12576416
Ravandi F, Talpaz M and Estrov Z (2003). Modulation of cellular signaling pathways: prospects for targeted therapy in hematological malignancies. Clin. Cancer Res. 9: 535-550.
PMid:7216231
Revel JP, Yancey SB, Meyer DJ and Nicholson B (1980). Cell junctions and intercellular communication. In Vitro 16: 1010-1017.
doi:10.1007/BF02619251
PMid:8563804
Scott RJ (1995). Isolation of whole cell (total) RNA. Methods Mol. Biol. 49: 197-202.
PMid:12177410 PMCid:123230
Su AI, Guidotti LG, Pezacki JP, Chisari FV, et al. (2002). Gene expression during the priming phase of liver regeneration after partial hepatectomy in mice. Proc. Natl. Acad. Sci. U. S. A. 99: 11181-11186.
doi:10.1073/pnas.122359899
PMid:18302533
Swain MG (2008). Hepatic NKT cells: friend or foe? Clin. Sci. 114: 457-466.
doi:10.1042/CS20070328
PMid:15459664
Taub R (2004). Liver regeneration: from myth to mechanism. Nat. Rev. Mol. Cell Biol. 5: 836-847.
doi:10.1038/nrm1489
PMid:20339955
Wang GP and Xu CS (2010). Reference gene selection for real-time RT-PCR in eight kinds of rat regenerating hepatic cells. Mol. Biotechnol. 46: 49-57.
doi:10.1007/s12033-010-9274-5
PMid:17344234
Wang JZ, Du Z, Payattakool R, Yu PS, et al. (2007). A new method to measure the semantic similarity of GO terms. Bioinformatics 23: 1274-1281.
doi:10.1093/bioinformatics/btm087
PMid:19672731
Wang WB, Fan JM, Zhang XL, Xu J, et al. (2009). Serial expression analysis of liver regeneration-related genes in rat regenerating liver. Mol. Biotechnol. 43: 221-231.
doi:10.1007/s12033-009-9199-z
PMid:20448144
Wei H, Wei H, Wang H, Tian Z, et al. (2010). Activation of natural killer cells inhibits liver regeneration in toxin-induced liver injury model in mice via a tumor necrosis factor-alpha-dependent mechanism. Am. J. Physiol. Gastrointest. Liver Physiol. 299: G275-G282.
doi:10.1152/ajpgi.00026.2010
PMid:18991167 PMCid:2657316
Xu CS, Shao HY, Liu SS, Qin B, et al. (2009). Possible regulation of genes associated with intracellular signaling cascade in rat liver regeneration. Scand. J. Gastroenterol. 44: 462-470.
doi:10.1080/00365520802495560
PMid:19998497 PMCid:2791269
Zheng ZY, Weng SY and Yu Y (2009). Signal molecule-mediated hepatic cell communication during liver regeneration. World J. Gastroenterol. 15: 5776-5783.
doi:10.3748/wjg.15.5776
“Isolation and characterization of 21 novel polymorphic microsatellite loci in the Chinese soft-shelled turtle Pelodiscus sinensis”, vol. 10. pp. 1006-1010, 2011.
, Altherr S and Freyer D (2000). Asian turtles are threatened by extinction. Turtle Tortoise Newsl. 1: 7-11.
Bloor PA, Barker FS, Watts PC and Noyes HA (2001). Microsatellite libraries by enrichment. Available at [http://www.genomics.liv.ac.uk/animal/MICROSAT.PDF]. Accessed January 2009.
Bonin F, Devaux B and Dupré A (2006). Turtles of the World. Johns Hopkins University Press, Baltimore, 146-147.
Fischer D and Bachmann K (1998). Microsatellite enrichment in organisms with large genomes (Allium cepa L.). Biotechniques 24: 796-800, 802.
PMid:9591129
Kalinowski ST, Taper ML and Marshall TC (2007). Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Mol. Ecol. 16: 1099-1106.
doi:10.1111/j.1365-294X.2007.03089.x
PMid:17305863
Que Y, Zhu B, Rosenthal H and Chang JB (2007). Isolation and characterization of microsatellites in Chinese soft-shelled turtle, Pelodiscus sinensis. Mol. Ecol. 7: 1265-1267.
doi:10.1111/j.1471-8286.2007.01850.x
Raymond M and Rousset F (1995). GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J. Heredity 86: 248-249.
Sambrook J and Russell DW (2001). Molecular Cloning. 3rd edn. Cold Spring Harbor Laboratory Press, New York.
Van Oosterhout C, Hutchinson WF, Wills DPM and Shipley P (2004). Micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4: 535-538.
doi:10.1111/j.1471-8286.2004.00684.x
Zhao EM (1998). China Red Data Book of Endangered Animals. In: Amphibia and Reptilia. Science Press, Beijing, 167-169.
“Resistance to lipopolysaccharide-induced endotoxic shock in heterozygous Zfp191 gene-knockout mice”, vol. 10, pp. 3712-3721, 2011.
,
Albanese V, Biguet NF, Kiefer H, Bayard E, et al. (2001). Quantitative effects on gene silencing by allelic variation at a tetranucleotide microsatellite. Hum. Mol. Genet. 10: 1785-1792.
http://dx.doi.org/10.1093/hmg/10.17.1785
PMid:11532988
Edelstein LC and Collins T (2005). The SCAN domain family of zinc finger transcription factors. Gene 359: 1-17.
http://dx.doi.org/10.1016/j.gene.2005.06.022
PMid:16139965
Halees AS, Leyfer D and Weng Z (2003). PromoSer: A large-scale mammalian promoter and transcription start site identification service. Nucleic Acids Res. 31: 3554-3559.
http://dx.doi.org/10.1093/nar/gkg549
PMid:12824364 PMCid:168956
Han ZG, Zhang QH, Ye M, Kan LX, et al. (1999). Molecular cloning of six novel Kruppel-like zinc finger genes from hematopoietic cells and identification of a novel transregulatory domain KRNB. J. Biol. Chem. 274: 35741-35748.
http://dx.doi.org/10.1074/jbc.274.50.35741
PMid:10585455
Harper J, Yan L, Loureiro RM, Wu I, et al. (2007). Repression of vascular endothelial growth factor expression by the zinc finger transcription factor ZNF24. Cancer Res. 67: 8736-8741.
http://dx.doi.org/10.1158/0008-5472.CAN-07-1617
PMid:17875714
Khalfallah O, Faucon-Biguet N, Nardelli J, Meloni R, et al. (2008). Expression of the transcription factor Zfp191 during embryonic development in the mouse. Gene Expr. Patterns 8: 148-154.
http://dx.doi.org/10.1016/j.gep.2007.11.002
PMid:18096443
Khalfallah O, Ravassard P, Lagache CS, Fligny C, et al. (2009). Zinc finger protein 191 (ZNF191/Zfp191) is necessary to maintain neural cells as cycling progenitors. Stem Cells 27: 1643-1653.
http://dx.doi.org/10.1002/stem.88
PMid:19544452
Kyriakis JM and Avruch J (2001). Mammalian mitogen-activated protein kinase signal transduction pathways activated by stress and inflammation. Physiol. Rev. 81: 807-869.
PMid:11274345
Lee JC, Kassis S, Kumar S, Badger A, et al. (1999). p38 mitogen-activated protein kinase inhibitors-mechanisms and therapeutic potentials. Pharmacol. Ther. 82: 389-397.
http://dx.doi.org/10.1016/S0163-7258(99)00008-X
Li J, Chen X, Yang H, Wang S, et al. (2006). The zinc finger transcription factor 191 is required for early embryonic development and cell proliferation. Exp. Cell Res. 312: 3990-3998.
http://dx.doi.org/10.1016/j.yexcr.2006.08.020
PMid:17064688
Li J, Chen X, Gong X, Liu Y, et al. (2009). A transcript profiling approach reveals the zinc finger transcription factor ZNF191 is a pleiotropic factor. BMC Genomics 10: 241.
http://dx.doi.org/10.1186/1471-2164-10-241
PMid:19463170 PMCid:2694838
Lu D, Searles MA and Klug A (2003). Crystal structure of a zinc-finger-RNA complex reveals two modes of molecular recognition. Nature 426: 96-100.
http://dx.doi.org/10.1038/nature02088
PMid:14603324
Mannel DN (2007). Advances in sepsis research derived from animal models. Int. J. Med. Microbiol. 297: 393-400.
http://dx.doi.org/10.1016/j.ijmm.2007.03.005
PMid:17452126
Manthey CL, Wang SW, Kinney SD and Yao Z (1998). SB202190, a selective inhibitor of p38 mitogen-activated protein kinase, is a powerful regulator of LPS-induced mRNAs in monocytes. J. Leukoc. Biol. 64: 409-417.
PMid:9738669
Moriyama M, Matsukawa A, Kudoh S, Takahashi T, et al. (2006). The neuropeptide neuromedin U promotes IL-6 production from macrophages and endotoxin shock. Biochem. Biophys. Res. Commun. 341: 1149-1154.
http://dx.doi.org/10.1016/j.bbrc.2006.01.075
PMid:16466693
Noll L, Peterson FC, Hayes PL, Volkman BF, et al. (2008). Heterodimer formation of the myeloid zinc finger 1 SCAN domain and association with promyelocytic leukemia nuclear bodies. Leuk. Res. 32: 1582-1592.
http://dx.doi.org/10.1016/j.leukres.2008.03.024
PMid:18472161
Prost JF, Negre D, Cornet-Javaux F, Cortay JC, et al. (1999). Isolation, cloning, and expression of a new murine zinc finger encoding gene. Biochim. Biophys. Acta 1447: 278-283.
http://dx.doi.org/10.1016/S0167-4781(99)00157-8
Remick DG and Ward PA (2005). Evaluation of endotoxin models for the study of sepsis. Shock 24 (Suppl 1): 7-11.
http://dx.doi.org/10.1097/01.shk.0000191384.34066.85
PMid:16374366
Roth K, Chen WM and Lin TJ (2008). Positive and negative regulatory mechanisms in high-affinity IgE receptor-mediated mast cell activation. Arch. Immunol. Ther. Exp. 56: 385-399.
http://dx.doi.org/10.1007/s00005-008-0041-2
PMid:19082920
Silvestri C, Narimatsu M, von B, I, Liu Y, et al. (2008). Genome-wide identification of Smad/Foxh1 targets reveals a role for Foxh1 in retinoic acid regulation and forebrain development. Dev. Cell 14: 411-423.
http://dx.doi.org/10.1016/j.devcel.2008.01.004
PMid:18331719
Sriskandan S and Altmann DM (2008). The immunology of sepsis. J. Pathol. 214: 211-223.
http://dx.doi.org/10.1002/path.2274
PMid:18161754
Tarca AL, Draghici S, Khatri P, Hassan SS, et al. (2009). A novel signaling pathway impact analysis. Bioinformatics 25: 75-82.
http://dx.doi.org/10.1093/bioinformatics/btn577
PMid:18990722 PMCid:2732297
van der Poll T and van Deventer SJ (1999). Cytokines and anticytokines in the pathogenesis of sepsis. Infect. Dis. Clin. North Am. 13: 413-26, ix.
http://dx.doi.org/10.1016/S0891-5520(05)70083-0
Wang H, Sun R, Liu G, Yao M, et al. (2008). Characterization of the target DNA sequence for the DNA-binding domain of zinc finger protein 191. Acta Biochim. Biophys. Sin. 40: 704-710.
Watanabe E, Hirasawa H, Oda S, Matsuda K, et al. (2005). Extremely high interleukin-6 blood levels and outcome in the critically ill are associated with tumor necrosis factor- and interleukin-1-related gene polymorphisms. Crit. Care Med. 33: 89-97.
http://dx.doi.org/10.1097/01.CCM.0000150025.79100.7D
PMid:15644653
“Simplified preparation of a DNA ladder using PCR”, vol. 10. pp. 1631-1635, 2011.
, Hu ALW, Hartley JL and Jordan HJ (2005). Nucleic Acid Ladders. US Patent No. 6,924,098. Invitrogen Corporation, Carlsbad.
Hyman ED (1998). DNA Ladders. US Patent No. 5,840,575. United States Patent Office, Alexandria.
Wang TY, Guo L and Zhang JH (2010). Preparation of DNA ladder based on multiplex PCR technique. J. Nucleic Acids 2010. Doi 10.4061/2010/421803.
http://dx.doi.org/10.4061/2010/421803
PMid:20725620 PMCid:2915804
Wei LJ, Wei YT, Huang XF, Wei XQ, et al. (2004). Construction of a new kind of DNA marker vector. Biotechnology 14: 33-35.
Zhu CJ, Wei QY, Qu WL and Ding H (2005). Experimental study on making a new DNA marker from positive and negative DNA samples. Acta Med. Sin. 18: 937-938.
“A simplified universal genomic DNA extraction protocol suitable for PCR”, vol. 10, pp. 519-525, 2011.
,
Ahmed I, Islam M, Arshad W, Mannan A, et al. (2009). High-quality plant DNA extraction for PCR: an easy approach. J. Appl. Genet. 50: 105-107.
http://dx.doi.org/10.1007/BF03195661
PMid:19433907
Biase FH, Franco MM, Goulart LR and Antunes RC (2002). Protocol for extraction of genomic DNA from swine solid tissues. Genet. Mol. Biol. 25: 313-315.
http://dx.doi.org/10.1590/S1415-47572002000300011
Cheng YJ, Guo WW, Yi HL, Pang XM, et al. (2003). An efficient protocol for genomic DNA extraction from citrus species. Plant Mol. Biol. Rep. 21: 177a-177g.
http://dx.doi.org/10.1007/BF02774246
Doyle JJ and Doyle JL (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19: 11-15.
Hoarau G, Coyer JA, Stam WT and Olsen JL (2007). A fast and inexpensive DNA extraction/purification protocol for brown macroalgae. Mol. Ecol. Notes 7: 191-193.
http://dx.doi.org/10.1111/j.1471-8286.2006.01587.x
Huang X, Zeller FJ, Hsam SL, Wenzel G, et al. (2000). Chromosomal location of AFLP markers in common wheat utilizing nulli-tetrasomic stocks. Genome 43: 298-305.
http://dx.doi.org/10.1139/g99-118
PMid:10791818
Jobes DV, Hurley DL and Thien LB (1995). Plant DNA isolation: a method to efficiently remove polyphenolics, polysac-charides, and RNA. Taxon 44: 379-386.
http://dx.doi.org/10.2307/1223408
Kotchoni SO and Gachomo EW (2009). A rapid and hazardous reagent free protocol for genomic DNA extraction suitable for genetic studies in plants. Mol. Biol. Rep. 36: 1633-1636.
http://dx.doi.org/10.1007/s11033-008-9362-9
PMid:18781397
Margam VM, Gachomo EW, Shukle JH, Ariyo OO, et al. (2010). A simplified arthropod genomic-DNA extraction protocol for polymerase chain reaction (PCR)-based specimen identification through barcoding. Mol. Biol. Rep. 37: 3631-3635.
http://dx.doi.org/10.1007/s11033-010-0014-5
PMid:20204529
Roberge C, Pommier SA and Houde A (1997). Rapid DNA purification for Hal gene PCR diagnosis in porcine tissues and extension to other meat species. Meat Sci. 45: 17-22.
http://dx.doi.org/10.1016/S0309-1740(96)00095-2
Sambrook J, Fritsch EF and Maniatis T (1989). Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Nova York.
Walsh PS, Metzger DA and Higuchi R (1991). Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques 10: 506-513.
PMid:1867860
Yue GH and Orban L (2005). A simple and affordable method for high-throughput DNA extraction from animal tissues for polymerase chain reaction. Electrophoresis 26: 3081-3083.
http://dx.doi.org/10.1002/elps.200410411
PMid:16047311
“Association of the PPARγ2 gene Pro12Ala variant with primary hypertension and metabolic lipid disorders in Han Chinese of Inner Mongolia”, vol. 9, pp. 1312-1320, 2010.
, Ahmed W, Ziouzenkova O, Brown J, Devchand P, et al. (2007). PPARs and their metabolic modulation: new mechanisms for transcriptional regulation? J. Intern. Med. 262: 184-198.
http://dx.doi.org/10.1111/j.1365-2796.2007.01825.x
PMid:17645586
Buzzetti R, Petrone A, Caiazzo AM, Alemanno I, et al. (2005). PPAR-gamma2 Pro12Ala variant is associated with greater insulin sensitivity in childhood obesity. Pediatr. Res. 57: 138-140.
http://dx.doi.org/10.1203/01.PDR.0000147728.62185.21
PMid:15531738
Douglas JA, Erdos MR, Watanabe RM, Braun A, et al. (2001). The peroxisome proliferator-activated receptor-gamma2 Pro12A1a variant: association with type 2 diabetes and trait differences. Diabetes 50: 886-890.
http://dx.doi.org/10.2337/diabetes.50.4.886
PMid:11289057
Ereqat S, Nasereddin A, Azmi K, Abdeen Z, et al. (2009). Impact of the Pro12Ala polymorphism of the PPAR-gamma 2 gene on metabolic and clinical characteristics in the Palestinian type 2 diabetic patients. PPAR Res. 2009: 874126.
http://dx.doi.org/10.1155/2009/874126
PMid:19859551 PMCid:2766506
Gouni-Berthold I, Giannakidou E, Muller-Wieland D, Faust M, et al. (2005). Peroxisome proliferator-activated receptor-gamma2 Pro12Ala and endothelial nitric oxide synthase-4a/b gene polymorphisms are not associated with hypertension in diabetes mellitus type 2. J. Hypertens. 23: 301-308.
http://dx.doi.org/10.1097/00004872-200502000-00012
PMid:15662218
Greene ME, Blumberg B, McBride OW, Yi HF, et al. (1995). Isolation of the human peroxisome proliferator activated receptor gamma cDNA: expression in hematopoietic cells and chromosomal mapping. Gene Expr. 4: 281-299.
PMid:7787419
Hasstedt SJ, Ren QF, Teng K and Elbein SC (2001). Effect of the peroxisome proliferator-activated receptor-gamma 2 pro(12)ala variant on obesity, glucose homeostasis, and blood pressure in members of familial type 2 diabetic kindreds. J. Clin. Endocrinol. Metab. 86: 536-541.
http://dx.doi.org/10.1210/jc.86.2.536
PMid:11158005
He W (2009). PPARgamma2 polymorphism and human health. PPAR. Res. 2009: 849538.
http://dx.doi.org/10.1155/2009/849538
PMid:19390629 PMCid:2669649
Horiki M, Ikegami H, Fujisawa T, Kawabata Y, et al. (2004). Association of Pro12Ala polymorphism of PPARgamma gene with insulin resistance and related diseases. Diabetes Res. Clin. Pract. 66 (Suppl 1): S63-S67.
http://dx.doi.org/10.1016/j.diabres.2003.09.023
PMid:15563983
Mirzaei H, Akrami SM, Golmohammadi T, Doosti M, et al. (2009). Polymorphism of Pro12Ala in the peroxisome proliferator-activated receptor gamma2 gene in Iranian diabetic and obese subjects. Metab. Syndr. Relat. Disord. 7: 453-458.
http://dx.doi.org/10.1089/met.2008.0099
PMid:19558269
Ostgren CJ, Lindblad U, Melander O, Melander A, et al. (2003). Peroxisome proliferator-activated receptor-gammaPro12Ala polymorphism and the association with blood pressure in type 2 diabetes: Skaraborg Hypertension and Diabetes Project. J. Hypertens. 21: 1657-1662.
Pinterova D, Cerna M, Kolostova K, Novota P, et al. (2004). The frequency of alleles of the Pro12Ala polymorphism in PPARgamma2 is different between healthy controls and patients with type 2 diabetes. Folia Biol. 50: 153-156.
Rodriguez-Esparragon FJ, Rodriguez-Perez JC, Macias-Reyes A and Alamo-Santana F (2003). Peroxisome proliferator-activated receptor-gamma2-Pro12Ala and endothelial nitric oxide synthase-4a/bgene polymorphisms are associated with essential hypertension. J. Hypertens. 21: 1649-1655.
http://dx.doi.org/10.1097/00004872-200309000-00013
PMid:12923396
Sookoian S, Garcia SI, Porto PI, Dieuzeide G, et al. (2005). Peroxisome proliferator-activated receptor gamma and its coactivator-1 alpha may be associated with features of the metabolic syndrome in adolescents. J. Mol. Endocrinol. 35: 373-380.
http://dx.doi.org/10.1677/jme.1.01837
PMid:16216916
Stefanski A, Majkowska L, Ciechanowicz A, Frankow M, et al. (2006). Association between the Pro12Ala variant of the peroxisome proliferator-activated receptor-gamma2 gene and increased 24-h diastolic blood pressure in obese patients with type II diabetes. J. Hum. Hypertens. 20: 684-692.
http://dx.doi.org/10.1038/sj.jhh.1002040
PMid:16625233
Swarbrick MM, Chapman CM, McQuillan BM, Hung J, et al. (2001). A Pro12Ala polymorphism in the human peroxisome proliferator-activated receptor-gamma 2 is associated with combined hyperlipidaemia in obesity. Eur. J. Endocrinol. 144: 277-282.
http://dx.doi.org/10.1530/eje.0.1440277
PMid:11248748
Tai ES, Corella D, Deurenberg-Yap M, Adiconis X, et al. (2004). Differential effects of the C1431T and Pro12Ala PPARgamma gene variants on plasma lipids and diabetes risk in an Asian population. J. Lipid Res. 45: 674-685.
http://dx.doi.org/10.1194/jlr.M300363-JLR200
PMid:14729856
Tamori Y, Masugi J, Nishino N and Kasuga M (2002). Role of peroxisome proliferator-activated receptor-gamma in maintenance of the characteristics of mature 3T3-L1 adipocytes. Diabetes 51: 2045-2055.
http://dx.doi.org/10.2337/diabetes.51.7.2045
PMid:12086932
Tavares V, Hirata RD, Rodrigues AC, Monte O, et al. (2005). Association between Pro12Ala polymorphism of the PPAR-gamma2 gene and insulin sensitivity in Brazilian patients with type-2 diabetes mellitus. Diabetes Obes. Metab. 7: 605-611.
http://dx.doi.org/10.1111/j.1463-1326.2004.00453.x
PMid:16050954
Vanden Heuvel JP (2007). The PPAR resource page. Biochim. Biophys. Acta 1771: 1108-1112.
http://dx.doi.org/10.1016/j.bbalip.2007.03.007
PMid:17493868
Yliharsila H, Eriksson JG, Forsen T, Laakso M, et al. (2004). Interactions between peroxisome proliferator-activated receptor-gamma 2 gene polymorphisms and size at birth on blood pressure and the use of antihypertensive medication. J. Hypertens. 22: 1283-1287.
http://dx.doi.org/10.1097/01.hjh.0000125438.28861.a4
PMid:15201543
Zietz B, Barth N, Spiegel D, Schmitz G, et al. (2002). Pro12Ala polymorphism in the peroxisome proliferator-activated receptor-gamma2 (PPARgamma2) is associated with higher levels of total cholesterol and LDL-cholesterol in male Caucasian type 2 diabetes patients. Exp. Clin. Endocrinol. Diabetes 110: 60-66.
http://dx.doi.org/10.1055/s-2002-23487
PMid:11928067
“Characterization of the complete mitochondrial genome of the Rock pigeon, Columba livia (Columbiformes: Columbidae)”, vol. 9, pp. 1234-1249, 2010.
, Boore JL (1999). Animal mitochondrial genomes. Nucleic Acids Res. 27: 1767-1780.
http://dx.doi.org/10.1093/nar/27.8.1767
PMid:10101183 PMCid:148383
Brown GG, Gadaleta G, Pepe G, Saccone C, et al. (1986). Structural conservation and variation in the D-loop-containing region of vertebrate mitochondrial DNA. J. Mol. Biol. 192: 503-511.
http://dx.doi.org/10.1016/0022-2836(86)90272-X
Cooper A, Lalueza-Fox C, Anderson S, Rambaut A, et al. (2001). Complete mitochondrial genome sequences of two extinct moas clarify ratite evolution. Nature 409: 704-707.
http://dx.doi.org/10.1038/35055536
PMid:11217857
Gibb GC, Kardailsky O, Kimball RT, Braun EL, et al. (2007). Mitochondrial genomes and avian phylogeny: complex characters and resolvability without explosive radiations. Mol. Biol. Evol. 24: 269-280.
http://dx.doi.org/10.1093/molbev/msl158
PMid:17062634
Haddrath O and Baker AJ (2001). Complete mitochondrial DNA genome sequences of extinct birds: ratite phylogenetics and the vicariance biogeography hypothesis. Proc. Biol. Sci. 268: 939-945.
http://dx.doi.org/10.1098/rspb.2001.1587
PMid:11370967 PMCid:1088691
Hall AT (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids Symp. Ser. 41: 95-98.
Harlid A, Janke A and Arnason U (1998). The complete mitochondrial genome of Rhea americana and early avian divergences. J. Mol. Evol. 46: 669-679.
http://dx.doi.org/10.1007/PL00006347
PMid:9608049
Harrison GL, McLenachan PA, Phillips MJ, Slack KE, et al. (2004). Four new avian mitochondrial genomes help get to basic evolutionary questions in the late cretaceous. Mol. Biol. Evol. 21: 974-983.
http://dx.doi.org/10.1093/molbev/msh065
PMid:14739240
Hazkani-Covo E, Zeller RM and Martin W (2010). Molecular poltergeists: mitochondrial DNA copies (numts) in sequenced nuclear genomes. PLoS Genet. 6: e1000834.
http://dx.doi.org/10.1371/journal.pgen.1000834
PMid:20168995 PMCid:2820518
Howard R and Moore A (2003). The Howard and Moore Complete Checklist of the Birds of the World. 3rd edn. Christopher Helm, London.
L'Abbé D, Duhaime JF, Lang BF and Morais R (1991). The transcription of DNA in chicken mitochondria initiates from one major bidirectional promoter. J. Biol. Chem. 266: 10844-10850.
PMid:1710214
Larkin MA, Blackshields G, Brown NP, Chenna R, et al. (2007). Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948.
http://dx.doi.org/10.1093/bioinformatics/btm404
PMid:17846036
Livezey BC and Zusi RL (2007). Higher-order phylogeny of modern birds (Theropoda, Aves: Neornithes) based on comparative anatomy. II. Analysis and discussion. Zool. J. Linn. Soc. 149: 1-95.
http://dx.doi.org/10.1111/j.1096-3642.2006.00293.x
PMid:18784798 PMCid:2517308
Lohse M, Drechsel O and Bock R (2007). OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes. Curr. Genet. 52: 267-274.
http://dx.doi.org/10.1007/s00294-007-0161-y
PMid:17957369
Lowe TM and Eddy SR (1997). tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964.
PMid:9023104 PMCid:146525
Mindell DP, Sorenson MD and Dimcheff DE (1998). Multiple independent origins of mitochondrial gene order in birds. Proc. Natl. Acad. Sci. U. S. A. 95: 10693-10697.
http://dx.doi.org/10.1073/pnas.95.18.10693
PMid:9724766 PMCid:27957
Moore WS (1995). Inferring phylogenies from mtDNA variation: mitochondrial-gene trees versus nuclear-gene trees. Evolution 49: 718-726.
http://dx.doi.org/10.2307/2410325
Morgan-Richards M, Trewick SA, Bartosch-Harlid A, Kardailsky O, et al. (2008). Bird evolution: testing the Metaves clade with six new mitochondrial genomes. BMC Evol. Biol. 8: 20.
http://dx.doi.org/10.1186/1471-2148-8-20
PMid:18215323 PMCid:2259304
Nishibori M, Hayashi T, Tsudzuki M, Yamamoto Y, et al. (2001). Complete sequence of the Japanese quail (Coturnix japonica) mitochondrial genome and its genetic relationship with related species. Anim. Genet. 32: 380-385.
http://dx.doi.org/10.1046/j.1365-2052.2001.00795.x
PMid:11736810
Nishibori M, Shimogiri T, Hayashi T and Yasue H (2005). Molecular evidence for hybridization of species in the genus Gallus except for Gallus varius. Anim Genet. 36: 367-375.
http://dx.doi.org/10.1111/j.1365-2052.2005.01318.x
PMid:16167978
Paton T, Haddrath O and Baker AJ (2002). Complete mitochondrial DNA genome sequences show that modern birds are not descended from transitional shorebirds. Proc. Biol. Sci. 269: 839-846.
http://dx.doi.org/10.1098/rspb.2002.1961
PMid:11958716 PMCid:1690957
Pereira SL, Johnson KP, Clayton DH and Baker AJ (2007). Mitochondrial and nuclear DNA sequences support a Cretaceous origin of Columbiformes and a dispersal-driven radiation in the Paleocene. Syst. Biol. 56: 656-672.
http://dx.doi.org/10.1080/10635150701549672
PMid:17661233
Perna NT and Kocher TD (1995). Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes. J. Mol. Evol. 41: 353-358.
http://dx.doi.org/10.1007/BF01215182
PMid:7563121
Pratt RC, Gibb GC, Morgan-Richards M, Phillips MJ, et al. (2009). Toward resolving deep neoaves phylogeny: data, signal enhancement, and priors. Mol. Biol. Evol. 26: 313-326.
http://dx.doi.org/10.1093/molbev/msn248
PMid:18981298
Randi E and Lucchini V (1998). Organization and evolution of the mitochondrial DNA control region in the avian genus Alectoris. J. Mol. Evol. 47: 449-462.
http://dx.doi.org/10.1007/PL00006402
PMid:9767690
Rokas A, Williams BL, King N and Carroll SB (2003). Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature 425: 798-804.
http://dx.doi.org/10.1038/nature02053
PMid:14574403
Saccone C, Pesole G and Sbisa E (1991). The main regulatory region of mammalian mitochondrial DNA: structure-function model and evolutionary pattern. J. Mol. Evol. 33: 83-91.
http://dx.doi.org/10.1007/BF02100199
PMid:1909377
Sambrook J and Russell DW (2001). Molecular Cloning: A Laboratory Manual. 3rd edn. Cold Spring Harbor Laboratory Press, New York.
San Mauro D, Garcia-Paris M and Zardoya R (2004). Phylogenetic relationships of discoglossid frogs (Amphibia: Anura: Discoglossidae) based on complete mitochondrial genomes and nuclear genes. Gene 343: 357-366.
http://dx.doi.org/10.1016/j.gene.2004.10.001
PMid:15588590
Sbisa E, Tanzariello F, Reyes A, Pesole G, et al. (1997). Mammalian mitochondrial D-loop region structural analysis: identification of new conserved sequences and their functional and evolutionary implications. Gene 205: 125-140.
http://dx.doi.org/10.1016/S0378-1119(97)00404-6
Shadel GS and Clayton DA (1997). Mitochondrial DNA maintenance in vertebrates. Annu. Rev. Biochem. 66: 409-435.
http://dx.doi.org/10.1146/annurev.biochem.66.1.409
PMid:9242913
Shen X, Tian M, Liu Z, Cheng H, et al. (2009). Complete mitochondrial genome of the sea cucumber Apostichopus japonicus (Echinodermata: Holothuroidea): the first representative from the subclass Aspidochirotacea with the echinoderm ground pattern. Gene 439: 79-86.
http://dx.doi.org/10.1016/j.gene.2009.03.008
PMid:19306915
Slack KE, Janke A, Penny D and Arnason U (2003). Two new avian mitochondrial genomes (penguin and goose) and a summary of bird and reptile mitogenomic features. Gene 302: 43-52.
http://dx.doi.org/10.1016/S0378111902010533
PMid:12527195
Slack KE, Jones CM, Ando T, Harrison GL, et al. (2006). Early penguin fossils, plus mitochondrial genomes, calibrate avian evolution. Mol. Biol. Evol. 23: 1144-1155.
http://dx.doi.org/10.1093/molbev/msj124
PMid:16533822
Slack KE, Delsuc F, McLenachan PA, Arnason U, et al. (2007). Resolving the root of the avian mitogenomic tree by breaking up long branches. Mol. Phylogenet. Evol. 42: 1-13.
http://dx.doi.org/10.1016/j.ympev.2006.06.002
PMid:16854605
Walberg MW and Clayton DA (1981). Sequence and properties of the human KB cell and mouse L cell D-loop regions of mitochondrial DNA. Nucleic Acids Res. 9: 5411-5421.
http://dx.doi.org/10.1093/nar/9.20.5411
PMid:7301592 PMCid:327529
Wang C, Chen Q, Lu G, Xu J, et al. (2008). Complete mitochondrial genome of the grass carp (Ctenopharyngodon idella, Teleostei): insight into its phylogenic position within Cyprinidae. Gene 424: 96-101.
http://dx.doi.org/10.1016/j.gene.2008.07.011
PMid:18706492
Wolstenholme DR (1992). Animal mitochondrial DNA: structure and evolution. Int. Rev. Cytol. 141: 173-216.
http://dx.doi.org/10.1016/S0074-7696(08)62066-5
Wyman SK, Jansen RK and Boore JL (2004). Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20: 3252-3255.
http://dx.doi.org/10.1093/bioinformatics/bth352
PMid:15180927
Xia X and Xie Z (2001). DAMBE: software package for data analysis in molecular biology and evolution. J. Hered. 92: 371-373.
http://dx.doi.org/10.1093/jhered/92.4.371
PMid:11535656