Publications

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2012
S. O. Bafeel, Arif, I. A., Bakir, M. A., Homaidan, A. A. Al, Farhan, A. H. Al, and Khan, H. A., DNA barcoding of arid wild plants using rbcL gene sequences, vol. 11, pp. 1934-1941, 2012.
Arif IA, Bakir MA, Khan HA, Al Farhan AH, et al. (2010). Application of RAPD for molecular characterization of plant species of medicinal value from an arid environment. Genet. Mol. Res. 9: 2191-2198. http://dx.doi.org/10.4238/vol9-4gmr848 PMid:21064026   Asahina H, Shinozaki J, Masuda K, Morimitsu Y, et al. (2010). Identification of medicinal Dendrobium species by phylogenetic analyses using matK and rbcL sequences. J. Nat. Med. 64: 133-138. http://dx.doi.org/10.1007/s11418-009-0379-8 PMid:20140532   Bafeel SO, Arif IA, Bakir MA, Khan HA, et al. (2011). Comparative evaluation of PCR success with universal primers of maturase K (matK) and ribulose-1, 5-bisphosphate carboxylase oxygenase large subunit (rbcL) for barcoding of some arid plants. Plant Omics J. 4: 195-198.   Baker HG (1989). Some Aspects of the Natural History of Seed Banks. In: Ecology of Soil Seed Banks (Leck MA, Parker VT and Simpson RL, eds.). Academic Press, San Diego, 9-21. PMCid:1350121   Bakker JP and Berendse F (1999). Constraints in the restoration of ecological diversity in grassland and heathland communities. Trends Ecol. Evol. 14: 63-68. http://dx.doi.org/10.1016/S0169-5347(98)01544-4   Batanouny KH (2001). Plants in the Deserts of the Middle East. Springer, New York.   Burgess KS, Fazekas AJ, Kesanakurti PR, Graham SW, et al. (2011). Discriminating plant species in a local temperate flora using the rbcL+matK DNA barcode. Method Ecol. Evol. 2: 333-340. http://dx.doi.org/10.1111/j.2041-210X.2011.00092.x   CBOL Plant Working Group (2009). A DNA barcode for land plants. Proc. Natl. Acad. Sci. U. S. A. 106: 12794-12797. http://dx.doi.org/10.1073/pnas.0905845106 PMid:19666622 PMCid:2722355   Chase MW, Salamin N, Wilkinson M, Dunwell JM, et al. (2005). Land plants and DNA barcodes: short-term and long-term goals. Philos. Trans. R. Soc. Lond. B Biol. Sci. 360: 1889-1895. http://dx.doi.org/10.1098/rstb.2005.1720 PMid:16214746 PMCid:1609218   de Groot GA, During HJ, Maas JW, Schneider H, et al. (2011). Use of rbcL and trnL-F as a two-locus DNA barcode for identification of NW-European ferns: an ecological perspective. PLoS One 6: e16371. http://dx.doi.org/10.1371/journal.pone.0016371 PMid:21298108 PMCid:3027654   Duffy AM, Kelchner SA and Wolf PG (2009). Conservation of selection on matK following an ancient loss of its flanking intron. Gene 438: 17-25. http://dx.doi.org/10.1016/j.gene.2009.02.006 PMid:19236909   Fazekas AJ, Burgess KS, Kesanakurti PR, Graham SW, et al. (2008). Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well. PLoS One 3: e2802. http://dx.doi.org/10.1371/journal.pone.0002802 PMid:18665273 PMCid:2475660   Felsenstein J (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791. http://dx.doi.org/10.2307/2408678   Graham S (2002). Global estimate of endangered plant species triples. Scientific American. Available at [http://www.scientificamerican.com/article.cfm?id=global-estimate-of-endang]. Accessed January 10, 2012.   Hebert PD and Gregory TR (2005). The promise of DNA barcoding for taxonomy. Syst. Biol. 54: 852-859. http://dx.doi.org/10.1080/10635150500354886 PMid:16243770   Hegazy AK, Hammouda O, Lovettt-Doust J and Gomaa NH (2009). Variations of the germinable soil seed bank along the altitudinal gradient in the northwestern Red Sea region. Acta Ecol. Sin. 29: 20-29. http://dx.doi.org/10.1016/j.chnaes.2009.04.004   Hollingsworth ML, Andra CA, Forrest LL, Richardson J, et al. (2009). Selecting barcoding loci for plants: evaluation of seven candidate loci with species-level sampling in three divergent groups of land plants. Mol. Ecol. Resour. 9: 439-457. http://dx.doi.org/10.1111/j.1755-0998.2008.02439.x PMid:21564673   Joshi K, Chavan P, Warude D and atwardhan B (2004). Molecular markers in herbal drug technology. Curr. Sci. 87: 159-165.   Kesanakurti PR, Fazekas AJ, Burgess KS, Percy DM, et al. (2011). Spatial patterns of plant diversity below-ground as revealed by DNA barcoding. Mol. Ecol. 20: 1289-1302. http://dx.doi.org/10.1111/j.1365-294X.2010.04989.x PMid:21255172   Kress WJ, Wurdack KJ, Zimmer EA, Weigt LA, et al. (2005). Use of DNA barcodes to identify flowering plants. Proc. Natl. Acad. Sci. U. S. A. 102: 8369-8374. http://dx.doi.org/10.1073/pnas.0503123102 PMid:15928076 PMCid:1142120   Kress WJ, Erickson DL, Jones FA, Swenson NG, et al. (2009). Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama. Proc. Natl. Acad. Sci. U. S. A. 106: 18621-18626. http://dx.doi.org/10.1073/pnas.0909820106 PMid:19841276 PMCid:2763884   Li FW, Tan BC, Buchbender V, Moran RC, et al. (2009). Identifying a mysterious aquatic fern gametophyte. Plant Syst. Evol. 281: 77-86. http://dx.doi.org/10.1007/s00606-009-0188-2   Plunkett G, Soltis D and Soltis P (1997). Clarification of the relationship beteen Apiaceae and Araliaceae based on matK and rbcL sequence data. Am. J. Bot. 84: 565. http://dx.doi.org/10.2307/2446032 PMid:21708608   Ratnasingham S and Hebert PDN (2007). BOLD: The Barcode of Life Data System (www.barcodinglife.org). Mol. Ecol. Note. 7: 355-364.   Roy S, Tyagi A, Shukla V, Kumar A, et al. (2010). Universal plant DNA barcode loci may not work in complex groups: a case study with Indian berberis species. PLoS One 5: e13674. http://dx.doi.org/10.1371/journal.pone.0013674 PMid:21060687 PMCid:2965122   Soltis DE, Kuzoff RK, Conti E, Gornall R, et al. (1996). matK and rbcL gene sequence data indicate that Saxifraga (Saxifragaceae) is polyphyletic. Am. J. Bot. 83: 371-382. http://dx.doi.org/10.2307/2446171   Spooner DM (2009). DNA barcoding will frequently fail in complicated groups: An example in wild potatoes. Am. J. Bot. 96: 1177-1189. http://dx.doi.org/10.3732/ajb.0800246 PMid:21628268   Tamura K and Nei M (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10: 512-526. PMid:8336541   Tamura K, Dudley J, Nei M and Kumar S (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24: 1596-1599. http://dx.doi.org/10.1093/molbev/msm092 PMid:17488738   Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, et al. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25: 4876-4882. http://dx.doi.org/10.1093/nar/25.24.4876 PMid:9396791 PMCid:147148   Tsukaya H, Nakajima M and Okada H (2011). Kalimantanorchis: A new genus of Mycotrophic orchid from West Kalimantan, Borneo. Syst. Bot. 36: 49-52. http://dx.doi.org/10.1600/036364411X553117   Van de Wiel CC, Van Der Schoot J, Van Valkenburg JL, Duistermaat H, et al. (2009). DNA barcoding discriminates the noxious invasive plant species, floating pennywort (Hydrocotyle ranunculoides L.f.), from non-invasive relatives. Mol. Ecol. Resour. 9: 1086-1091. http://dx.doi.org/10.1111/j.1755-0998.2009.02547.x PMid:21564846   Will KW, Mishler BD and Wheeler QD (2005). The perils of DNA barcoding and the need for integrative taxonomy. Syst. Biol. 54: 844-851. http://dx.doi.org/10.1080/10635150500354878 PMid:16243769   Zhang YB, Shaw PC, Sze CW, Wang ZT, et al. (2007). Molecular authentification of Chinese herbal materials. J. Food Drug Anal. 15: 1-9.