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“Mitochondrial haplogroup D4 confers resistance and haplogroup B is a genetic risk factor for high-altitude pulmonary edema among Han Chinese”, vol. 11, pp. 3658-3667, 2012.
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Ahsan A, Mohd G, Norboo T, Baig MA, et al. (2006). Heterozygotes of NOS3 polymorphisms contribute to reduced nitrogen oxides in high-altitude pulmonary edema. Chest 130: 1511-1519.
http://dx.doi.org/10.1378/chest.130.5.1511
PMid:17099031
Alexe G, Fuku N, Bilal E, Ueno H, et al. (2007). Enrichment of longevity phenotype in mtDNA haplogroups D4b2b, D4a, and D5 in the Japanese population. Hum. Genet. 121: 347-356.
http://dx.doi.org/10.1007/s00439-007-0330-6
PMid:17308896
Andrews RM, Kubacka I, Chinnery PF, Lightowlers RN, et al. (1999). Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nat. Genet. 23: 147.
http://dx.doi.org/10.1038/13779
PMid:10508508
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http://dx.doi.org/10.1073/pnas.88.1.189
PMid:1986365 PMCid:50775
Bartsch P, Mairbaurl H, Maggiorini M and Swenson ER (2005). Physiological aspects of high-altitude pulmonary edema. J. Appl. Physiol. 98: 1101-1110.
http://dx.doi.org/10.1152/japplphysiol.01167.2004
PMid:15703168
Basnyat B and Murdoch DR (2003). High-altitude illness. Lancet 361: 1967-1974.
http://dx.doi.org/10.1016/S0140-6736(03)13591-X
Bilal E, Rabadan R, Alexe G, Fuku N, et al. (2008). Mitochondrial DNA haplogroup D4a is a marker for extreme longevity in Japan. PLoS One 3: e2421.
http://dx.doi.org/10.1371/journal.pone.0002421
PMid:18545700 PMCid:2408726
Brandon MC, Ruiz-Pesini E, Mishmar D, Procaccio V, et al. (2009). MITOMASTER: a bioinformatics tool for the analysis of mitochondrial DNA sequences. Hum. Mutat. 30: 1-6.
http://dx.doi.org/10.1002/humu.20801
PMid:18566966
Burk A, Douzery EJP and Springer MS (2002). The secondary structure of mammalian mitochondrial 16S rRNA molecules: refinements based on a comparative phylogenetic approach. J. Mamm. Evol. 9: 225-252.
http://dx.doi.org/10.1023/A:1022649516930
Castello PR, David PS, McClure T, Crook Z, et al. (2006). Mitochondrial cytochrome oxidase produces nitric oxide under hypoxic conditions: implications for oxygen sensing and hypoxic signaling in eukaryotes. Cell Metab. 3: 277-287.
http://dx.doi.org/10.1016/j.cmet.2006.02.011
PMid:16581005
Chandel NS, Maltepe E, Goldwasser E, Mathieu CE, et al. (1998). Mitochondrial reactive oxygen species trigger hypoxia-induced transcription. Proc. Natl. Acad. Sci. U. S. A. 95: 11715-11720.
http://dx.doi.org/10.1073/pnas.95.20.11715
PMid:9751731 PMCid:21706
Dada LA, Chandel NS, Ridge KM, Pedemonte C, et al. (2003). Hypoxia-induced endocytosis of Na,K-ATPase in alveolar epithelial cells is mediated by mitochondrial reactive oxygen species and PKC-zeta. J. Clin. Invest. 111: 1057-1064.
PMid:12671055 PMCid:152585
Dehnert C, Berger MM, Mairbaurl H and Bartsch P (2007). High altitude pulmonary edema: a pressure-induced leak. Respir. Physiol. Neurobiol. 158: 266-273.
http://dx.doi.org/10.1016/j.resp.2007.05.002
PMid:17602898
Droma Y, Hanaoka M, Ota M, Katsuyama Y, et al. (2002). Positive association of the endothelial nitric oxide synthase gene polymorphisms with high-altitude pulmonary edema. Circulation 106: 826-830.
http://dx.doi.org/10.1161/01.CIR.0000024409.30143.70
PMid:12176955
Guo LJ, Oshida Y, Fuku N, Takeyasu T, et al. (2005). Mitochondrial genome polymorphisms associated with type-2 diabetes or obesity. Mitochondrion 5: 15-33.
http://dx.doi.org/10.1016/j.mito.2004.09.001
PMid:16060290
Hanaoka M, Droma Y, Hotta J, Matsuzawa Y, et al. (2003). Polymorphisms of the tyrosine hydroxylase gene in subjects susceptible to high-altitude pulmonary edema. Chest 123: 54-58.
http://dx.doi.org/10.1378/chest.123.1.54
PMid:12527603
Hanaoka M, Droma Y, Ota M, Ito M, et al. (2009). Polymorphisms of human vascular endothelial growth factor gene in high-altitude pulmonary oedema susceptible subjects. Respirology 14: 46-52.
http://dx.doi.org/10.1111/j.1440-1843.2008.01420.x
PMid:19144048
Hochachka PW (1986). Defense strategies against hypoxia and hypothermia. Science 231: 234-241.
http://dx.doi.org/10.1126/science.2417316
PMid:2417316
Hotta J, Hanaoka M, Droma Y, Katsuyama Y, et al. (2004). Polymorphisms of renin-angiotensin system genes with high-altitude pulmonary edema in Japanese subjects. Chest 126: 825-830.
http://dx.doi.org/10.1378/chest.126.3.825
PMid:15364762
Hultgren HN and Marticorena EA (1978). High altitude pulmonary edema. Epidemiologic observations in Peru. Chest 74: 372-376.
http://dx.doi.org/10.1378/chest.74.4.372
PMid:699645
Kivisild T, Tolk HV, Parik J, Wang Y, et al. (2002). The emerging limbs and twigs of the East Asian mtDNA tree. Mol. Biol. Evol. 19: 1737-1751.
http://dx.doi.org/10.1093/oxfordjournals.molbev.a003996
PMid:12270900
Kong QP, Bandelt HJ, Sun C, Yao YG, et al. (2006). Updating the East Asian mtDNA phylogeny: a prerequisite for the identification of pathogenic mutations. Hum. Mol. Genet. 15: 2076-2086.
http://dx.doi.org/10.1093/hmg/ddl130
PMid:16714301
Kwast KE, Burke PV, Staahl BT and Poyton RO (1999). Oxygen sensing in yeast: evidence for the involvement of the respiratory chain in regulating the transcription of a subset of hypoxic genes. Proc. Natl. Acad. Sci. U. S. A. 96: 5446-5451.
http://dx.doi.org/10.1073/pnas.96.10.5446
PMid:10318903 PMCid:21879
Luo Y, Tang S, Gao W, Chen L, et al. (2010). Genotyping mitochondrial DNA single nucleotide polymorphisms by PCR ligase detection reactions. Clin. Chem. Lab. Med. 48: 475-483.
http://dx.doi.org/10.1515/cclm.2010.097
PMid:20128730
Mortimer H, Patel S and Peacock AJ (2004). The genetic basis of high-altitude pulmonary oedema. Pharmacol. Ther. 101: 183-192.
http://dx.doi.org/10.1016/j.pharmthera.2003.11.003
PMid:14761704
Nigou M, Parfait B, Clauser E and Olivier JL (1998). Detection and quantification of the A3243G mutation of mitochondrial DNA by ligation detection reaction. Mol. Cell Probes 12: 273-282.
http://dx.doi.org/10.1006/mcpr.1998.0191
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Nishigaki Y, Yamada Y, Fuku N, Matsuo H, et al. (2007). Mitochondrial haplogroup N9b is protective against myocardial infarction in Japanese males. Hum. Genet. 120: 827-836.
http://dx.doi.org/10.1007/s00439-006-0269-z
PMid:17033820
Peacock AJ (1995). High altitude pulmonary oedema: who gets it and why? Eur. Respir. J. 8: 1819-1821.
http://dx.doi.org/10.1183/09031936.95.08111819
PMid:8620944
Qi Y, Niu W, Zhu T, Zhou W, et al. (2008). Synergistic effect of the genetic polymorphisms of the renin-angiotensin-aldosterone system on high-altitude pulmonary edema: a study from Qinghai-Tibet altitude. Eur. J. Epidemiol. 23: 143-152.
http://dx.doi.org/10.1007/s10654-007-9208-0
PMid:17987391
Qi Y, Niu WQ, Zhu TC, Liu JL, et al. (2009). Genetic interaction of Hsp70 family genes polymorphisms with high-altitude pulmonary edema among Chinese railway constructors at altitudes exceeding 4000 meters. Clin. Chim. Acta 405: 17-22.
http://dx.doi.org/10.1016/j.cca.2009.03.056
PMid:19351530
Rosa A, Fonseca BV, Krug T, Manso H, et al. (2008). Mitochondrial haplogroup H1 is protective for ischemic stroke in Portuguese patients. BMC Med. Genet. 9: 57.
http://dx.doi.org/10.1186/1471-2350-9-57
PMid:18593462 PMCid:2492853
Sarada S, Himadri P, Mishra C, Geetali P, et al. (2008). Role of oxidative stress and NFkB in hypoxia-induced pulmonary edema. Exp. Biol. Med. 233: 1088-1098.
http://dx.doi.org/10.3181/0712-RM-337
PMid:18641050
Sartori C, Allemann Y and Scherrer U (2007). Pathogenesis of pulmonary edema: learning from high-altitude pulmonary edema. Respir. Physiol. Neurobiol. 159: 338-349.
http://dx.doi.org/10.1016/j.resp.2007.04.006
PMid:17532272
Saxena S, Kumar R, Madan T, Gupta V, et al. (2005). Association of polymorphisms in pulmonary surfactant protein A1 and A2 genes with high-altitude pulmonary edema. Chest 128: 1611-1619.
http://dx.doi.org/10.1378/chest.128.3.1611
PMid:16162765
Schurr TG and Wallace DC (2002). Mitochondrial DNA diversity in Southeast Asian populations. Hum. Biol. 74: 431-452.
http://dx.doi.org/10.1353/hub.2002.0034
PMid:12180765
Wallace DC (2005). A mitochondrial paradigm of metabolic and degenerative diseases, aging, and cancer: a dawn for evolutionary medicine. Annu. Rev. Genet. 39: 359-407.
http://dx.doi.org/10.1146/annurev.genet.39.110304.095751
PMid:16285865 PMCid:2821041
Wen B, Li H, Lu D, Song X, et al. (2004). Genetic evidence supports demic diffusion of Han culture. Nature 431: 302-305.
http://dx.doi.org/10.1038/nature02878
PMid:15372031
Yao YG, Kong QP, Bandelt HJ, Kivisild T, et al. (2002). Phylogeographic differentiation of mitochondrial DNA in Han Chinese. Am. J. Hum. Genet. 70: 635-651.
http://dx.doi.org/10.1086/338999
PMid:11836649 PMCid:384943
Yoshida T and Tuder RM (2007). Pathobiology of cigarette smoke-induced chronic obstructive pulmonary disease. Physiol. Rev. 87: 1047-1082.
http://dx.doi.org/10.1152/physrev.00048.2006
PMid:17615396
“Patterns of synonymous codon usage bias in the model grass Brachypodium distachyon”, vol. 11, pp. 4695-4706, 2012.
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Hershberg R and Petrov DA (2008). Selection on codon bias. Annu. Rev. Genet. 42: 287-299.
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International Brachypodium Initiative (2010). Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 463: 763-768.
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Jiang Y, Deng F, Wang H and Hu Z (2008). An extensive analysis on the global codon usage pattern of baculoviruses. Arch. Virol. 153: 2273-2282.
http://dx.doi.org/10.1007/s00705-008-0260-1
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Kawabe A and Miyashita NT (2003). Patterns of codon usage bias in three dicot and four monocot plant species. Genes Genet. Syst. 78: 343-352.
http://dx.doi.org/10.1266/ggs.78.343
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Liu H, He R, Zhang H, Huang Y, et al. (2010). Analysis of synonymous codon usage in Zea mays. Mol. Biol. Rep. 37: 677-684.
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Liu Q (2006). Analysis of codon usage pattern in the radioresistant bacterium Deinococcus radiodurans. Biosystems 85: 99-106.
http://dx.doi.org/10.1016/j.biosystems.2005.12.003
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Liu Q and Xue Q (2005). Comparative studies on codon usage pattern of chloroplasts and their host nuclear genes in four plant species. J. Genet. 84: 55-62.
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“Carnitine and carnitine orotate affect the expression of the prolactin-releasing peptide gene”, vol. 10, pp. 3013-3019, 2011.
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