Publications
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“Analysis of upland cotton (Gossypium hirsutum) response to Verticillium dahliae inoculation by transcriptome sequencing”, vol. 14, pp. 13120-13130, 2015.
, “Lack of association between IL-6 -174G>C polymorphism and lung cancer: a meta-analysis”, vol. 14, pp. 163-169, 2015.
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“Selection pressures have driven population differentiation of domesticated and wild common carp (Cyprinus carpio L.)”, vol. 11, pp. 3222-3235, 2012.
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Appio KT and Weber LI (2007). Temporal genetic differentiation in cultured and natural beds of the brown mussel Perna perna (Mytilidae). Genet. Mol. Res. 6: 127-136.
PMid:17469062
Aung O, Nguyen TTT, Poompuang S and Kamonrat W (2010). Microsatellite DNA markers revealed genetic population structure among captive stocks and wild populations of mrigal, Cirrhinus cirrhosus in Myanmar. Aquaculture 299: 37-43.
http://dx.doi.org/10.1016/j.aquaculture.2009.12.010
Balon E (1995). Origin and domestication of the wild carp, Cyprinus carpio: from Roman gourmets to the swimming flowers. Aquaculture 129: 3-48.
http://dx.doi.org/10.1016/0044-8486(94)00227-F
Barker JSF, Frydenberg J, González J, Davies HI, et al. (2009). Bottlenecks, population differentiation and apparent selection at microsatellite loci in Australian Drosophila buzzatii. Heredity 102: 389-401.
http://dx.doi.org/10.1038/hdy.2008.127
PMid:19142202
Bazin E, Glemin S and Galtier N (2006). Population size does not influence mitochondrial genetic diversity in animals. Science 312: 570-572.
http://dx.doi.org/10.1126/science.1122033
PMid:16645093
Beaumont MA and Nichols RA (1996). Evaluating loci for use in the genetic analysis of population structure. Proc. R. Soc. Lond. B 263: 1619-1626.
http://dx.doi.org/10.1098/rspb.1996.0237
Beaumont MA and Balding DJ (2004). Identifying adaptive genetic divergence among populations from genome scans. Mol. Ecol. 13: 969-980.
http://dx.doi.org/10.1111/j.1365-294X.2004.02125.x
PMid:15012769
Carlson SM, Edeline E, Asbjorn VL, Haugen TO, et al. (2007). Four decades of opposing natural and human-induced artificial selection acting on Windermere pike (Esox lucius). Ecol. Lett. 10: 512-521.
http://dx.doi.org/10.1111/j.1461-0248.2007.01046.x
PMid:17498150
Cheng Y, Wakefield M, Siddle HV, Coggill PC, et al. (2009). Isolation and characterization of 10 MHC Class I-associated microsatellite loci in tammar wallaby (Macropus eugenii). Mol. Ecol. Resour. 9: 346-349.
http://dx.doi.org/10.1111/j.1755-0998.2008.02401.x
PMid:21564646
Chistiakov DA and Voronova NV (2009). Genetic evolution and diversity of common carp Cyprinus carpio L. Cent. Eur. J. Biol. 4: 304-312.
http://dx.doi.org/10.2478/s11535-009-0024-2
Coombs JA, Letcher BH and Nislow KH (2008). CREATE: a software to create input files from diploid genotypic data for 52 genetic software programs. Mol. Ecol. Resour. 8: 578-580.
http://dx.doi.org/10.1111/j.1471-8286.2007.02036.x
PMid:21585837
Cornuet JM and Luikart G (1996). Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144: 2001-2014.
PMid:8978083 PMCid:1207747
Dupanloup I, Schneider S and Excoffier L (2002). A simulated annealing approach to define the genetic structure of populations. Mol. Ecol. 11: 2571-2581.
http://dx.doi.org/10.1046/j.1365-294X.2002.01650.x
PMid:12453240
Excoffier L and Lischer HEL (2010). Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Resour. 10: 564-567.
http://dx.doi.org/10.1111/j.1755-0998.2010.02847.x
PMid:21565059
Excoffier L, Hofer T and Foll M (2009). Detecting loci under selection in a hierarchically structured population. Heredity 103: 285-298.
http://dx.doi.org/10.1038/hdy.2009.74
PMid:19623208
Fraser DJ, Cook AM, Eddington JD, Bentzen P, et al. (2008). Mixed evidence for reduced local adaptation in wild salmon resulting from interbreeding with escaped farmed salmon: complexities in hybrid fitness. Evol. Appl. 1: 501-512.
http://dx.doi.org/10.1111/j.1752-4571.2008.00037.x
PMCid:3352379
Galtier N, Nabholz B, Glemin S and Hurst GD (2009). Mitochondrial DNA as a marker of molecular diversity: a reappraisal. Mol. Ecol. 18: 4541-4550.
http://dx.doi.org/10.1111/j.1365-294X.2009.04380.x
PMid:19821901
Goudet J (1995). FSTAT (Version 1.2): A computer program to calculate F-statistics. J. Heredity 86: 485-486.
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Hansen MM, Meier K and Mensberg KLD (2010). Identifying footprints of selection in stocked brown trout populations: a spatio-temporal approach. Mol. Ecol. 19: 1787-1800.
http://dx.doi.org/10.1111/j.1365-294X.2010.04615.x
PMid:20345684
Innan H and Kim Y (2004). Pattern of polymorphism after strong artificial selection in a domestication event. Proc. Natl. Acad. Sci. U. S. A. 101: 10667-10672.
http://dx.doi.org/10.1073/pnas.0401720101
PMid:15249682 PMCid:489992
Kauer MO, Dieringer D and Schlotterer C (2003). A microsatellite variability screen for positive selection associated with the "out of Africa" habitat expansion of Drosophila melanogaster. Genetics 165: 1137-1148.
PMid:14668371 PMCid:1462820
Kohlmann K, Kersten P and Flajšhans M (2005). Microsatellite-based genetic variability and differentiation of domesticated, wild and feral common carp (Cyprinus carpio L.) populations. Aquaculture 247: 253-266.
http://dx.doi.org/10.1016/j.aquaculture.2005.02.024
Kohlmann K, Kersten P and Flajshans M (2007). Comparison of microsatellite variability in wild and cultured tench (Tinca tinca). Aquaculture 272: S147-S151.
http://dx.doi.org/10.1016/j.aquaculture.2007.08.003
Kuhner MK and Smith LP (2007). Comparing likelihood and Bayesian coalescent estimation of population parameters. Genetics 175: 155-165.
http://dx.doi.org/10.1534/genetics.106.056457
PMid:16510781 PMCid:1775024
Li Q, Shu J, Yu RH and Tian CY (2007). Genetic variability of cultured populations of the Pacific abalone (Haliotis discus hannai Ino) in China based on microsatellites. Aquac. Res. 38: 981-990.
http://dx.doi.org/10.1111/j.1365-2109.2007.01764.x
Lind CE, Evans BS, Knauer J, Taylor JJU, et al. (2009). Decreased genetic diversity and a reduced effective population size in cultured silver-lipped pearl oysters (Pinctada maxima). Aquaculture 286: 12-19.
http://dx.doi.org/10.1016/j.aquaculture.2008.09.009
Ljungqvist M, Åkesson M and Hansson B (2010). Do microsatellites reflect genome-wide genetic diversity in natural populations? Mol. Ecol. 19: 851-855.
http://dx.doi.org/10.1111/j.1365-294X.2010.04522.x
PMid:20102512
Lou YD and Sun JC (2001). Progress on studies of origin and genetic diversity of three breeds of red carp in Jiangxi province. J. Fish. China 25: 570-575.
McGinnity P, Prodohl P, Ferguson A, Hynes R, et al. (2003). Fitness reduction and potential extinction of wild populations of Atlantic salmon, Salmo salar, as a result of interactions with escaped farm salmon. Proc. Biol. Sci. 270: 2443-2450.
http://dx.doi.org/10.1098/rspb.2003.2520
PMid:14667333 PMCid:1691531
Nei M (1987). Molecular Evolution Genetics. Columbia University Press, New York.
Nielsen R (2005). Molecular signatures of natural selection. Annu. Rev. Genet. 39: 197-218.
http://dx.doi.org/10.1146/annurev.genet.39.073003.112420
PMid:16285858
Peakall R and Smouse PE (2006). GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol. Ecol. Notes 6: 288-295.
http://dx.doi.org/10.1111/j.1471-8286.2005.01155.x
Peel D, Ovenden JR and Peel SL (2004). NeEstimator: Software for Estimating Effective Population Size. Version 1.3. Department of Primary Industries and Fisheries, Queensland Government, Brisbane.
Piry S, Luikart G and Cornuet JM (1999). BOTTLENECK: a computer program for detecting recent reductions in the effective size using allele frequency data. J. Heredity 90: 502-503.
http://dx.doi.org/10.1093/jhered/90.4.502
Posada D (2006). Collapse: Describing Haplotypes from Sequence Alignments. In: Computational Evolutionary Biology Laboratory, University of Vigo, Vigo.
Rahman SMZ, Khan MR, Islam S and Alam S (2009). Genetic variation of wild and hatchery populations of the catla Indian major carp (Catla catla Hamilton 1822: Cypriniformes, Cyprinidae) revealed by RAPD markers. Genet. Mol. Biol. 32: 197-201.
http://dx.doi.org/10.1590/S1415-47572009005000013
PMid:21637668 PMCid:3032962
Raymond M and Rousset F (1995). GENEPOP (version 1.2): Population genetics software for exact tests and ecumenicism. Heredity 86: 248-249.
Rogell B, Eklund M, Thorngren H, Laurila A, et al. (2010). The effects of selection, drift and genetic variation on life-history trait divergence among insular populations of natterjack toad, Bufo calamita. Mol. Ecol. 19: 2229-2240.
http://dx.doi.org/10.1111/j.1365-294X.2010.04642.x
PMid:20465584
Sambrook Jl and Russell DW (2001). Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, New York.
Van Oosterhout C, Hutchinson WF, Wills DPM and Shipley P (2004). MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4: 535-538.
http://dx.doi.org/10.1111/j.1471-8286.2004.00684.x
Vigouroux Y, McMullen M, Hittinger CT, Houchins K, et al. (2002). Identifying genes of agronomic importance in maize by screening microsatellites for evidence of selection during domestication. Proc. Natl. Acad. Sci. U. S. A. 99: 9650- 9655.
http://dx.doi.org/10.1073/pnas.112324299
PMid:12105270 PMCid:124964
Wang CH, Li SF, Nagy ZT, Lehoczky I, et al. (2010). Molecular genetic structure and relationship of Chinese and Hungarian common carp (Cyprinus carpio L.) strains based on mitochondrial sequence. Aquac. Res. 41: 1339-1347.
http://dx.doi.org/10.1111/j.1365-2109.2009.02422.x
Zhang JS and Sun XY (2006). Open and analysis of breeding techniques for Jian common carp. China Fish. 9: 69-72.