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“Effects of different dwarfing interstocks on key enzyme activities and the expression of genes related to malic acid metabolism in Red Fuji apples”, vol. 14, pp. 17673-17683, 2015.
, “Molecular characterization, chromosome mapping, and expression profile of porcine CDC16”, vol. 14, pp. 12811-12819, 2015.
, “Acetate ester production by Chinese yellow rice wine yeast overexpressing the alcohol acetyltransferase-encoding gene ATF2”, vol. 13, pp. 9735-9746, 2014.
, , “Genes associated with disc degeneration identified using microarray gene expression profiling and bioinformatics analysis”, vol. 12, pp. 1431-1439, 2013.
, Alibés A, Yankilevich P, Ca-da A and Díaz-Uriarte R (2007). IDconverter and IDClight: conversion and annotation of gene and protein IDs. BMC Bioinformatics 8: 9.
http://dx.doi.org/10.1186/1471-2105-8-9
PMid:17214880 PMCid:1779800
Aoki Y, Ohtori S, Takahashi K, Ino H, et al. (2004). Innervation of the lumbar intervertebral disc by nerve growth factor-dependent neurons related to inflammatory pain. Spine 29: 1077-1081.
http://dx.doi.org/10.1097/00007632-200405150-00005
PMid:15131432
Baer AE, Wang JY, Kraus VB and Setton LA (2001). Collagen gene expression and mechanical properties of intervertebral disc cell-alginate cultures. J. Orthop. Res. 19: 2-10.
http://dx.doi.org/10.1016/S0736-0266(00)00003-6
Benjamini YHY (1995). Controlling the false discovery rate: A practical and powerful approach to multiple testing. J. Roy. Stat. Soc. Ser. B (Methodological) 57: 289-300.
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http://dx.doi.org/10.1016/j.plaphy.2007.12.008
PMid:18272378
Chen J, Baer AE, Paik PY, Yan W, et al. (2002). Matrix protein gene expression in intervertebral disc cells subjected to altered osmolarity. Biochem. Biophys. Res. Commun. 293: 932-938.
http://dx.doi.org/10.1016/S0006-291X(02)00314-5
Doita M, Kanatani T, Harada T and Mizuno K (1996). Immunohistologic study of the ruptured intervertebral disc of the lumbar spine. Spine 21: 235-241.
http://dx.doi.org/10.1097/00007632-199601150-00015
PMid:8720410
Fraser RD, Osti OL and Vernon-Roberts B (1993). Intervertebral disc degeneration. Eur. Spine J. 1: 205-213.
http://dx.doi.org/10.1007/BF00298361
PMid:20054919
Freeman SN, Ma Y and Cress WD (2008). RhoBTB2 (DBC2) is a mitotic E2F1 target gene with a novel role in apoptosis. J. Biol. Chem. 283: 2353-2362.
http://dx.doi.org/10.1074/jbc.M705986200
PMid:18039672 PMCid:2268526
Freemont AJ, Peacock TE, Goupille P, Hoyland JA, et al. (1997). Nerve ingrowth into diseased intervertebral disc in chronic back pain. Lancet 350: 178-181.
http://dx.doi.org/10.1016/S0140-6736(97)02135-1
Gautier L, Cope L, Bolstad BM and Irizarry RA (2004). affy - analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 20: 307-315.
http://dx.doi.org/10.1093/bioinformatics/btg405
PMid:14960456
Gruber HE, Ingram JA, Hoelscher G, Zinchenko N, et al. (2008). Brain-derived neurotrophic factor and its receptor in the human and the sand rat intervertebral disc. Arthritis Res. Ther. 10: R82.
http://dx.doi.org/10.1186/ar2456
PMid:18637190 PMCid:2575628
Gruber HE, Ingram JA, Hoelscher GL, Zinchenko N, et al. (2009). Asporin, a susceptibility gene in osteoarthritis, is expressed at higher levels in the more degenerate human intervertebral disc. Arthritis Res. Ther. 11: R47.
http://dx.doi.org/10.1186/ar2660
PMid:19327154 PMCid:2688197
Hadjipavlou AG, Tzermiadianos MN, Bogduk N and Zindrick MR (2008). The pathophysiology of disc degeneration: a critical review. J. Bone Joint Surg. Br. 90: 1261-1270.
http://dx.doi.org/10.1302/0301-620X.90B10.20910
PMid:18827232
Hiyama A, Sakai D, Tanaka M, Arai F, et al. (2011). The relationship between the Wnt/beta-catenin and TGF-beta/BMP signals in the intervertebral disc cell. J. Cell Physiol. 226: 1139-1148.
http://dx.doi.org/10.1002/jcp.22438
PMid:20945354
Huang da W, Sherman BT and Lempicki RA (2009). Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 4: 44-57.
PMid:19131956
Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, et al. (2003). Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4: 249-264.
http://dx.doi.org/10.1093/biostatistics/4.2.249
PMid:12925520
Kaminska B (2005). MAPK signalling pathways as molecular targets for anti-inflammatory therapy - from molecular mechanisms to therapeutic benefits. Biochim. Biophys. Acta 1754: 253-262.
http://dx.doi.org/10.1016/j.bbapap.2005.08.017
PMid:16198162
Kyriakis JM and Avruch J (2001). Mammalian mitogen-activated protein kinase signal transduction pathways activated by stress and inflammation. Physiol. Rev. 81: 807-869.
PMid:11274345
Le Maitre CL, Freemont AJ and Hoyland JA (2004). Localization of degradative enzymes and their inhibitors in the degenerate human intervertebral disc. J. Pathol. 204: 47-54.
http://dx.doi.org/10.1002/path.1608
PMid:15307137
Le Maitre CL, Freemont AJ and Hoyland JA (2005). The role of interleukin-1 in the pathogenesis of human intervertebral disc degeneration. Arthritis Res. Ther. 7: R732-R745.
http://dx.doi.org/10.1186/ar1732
PMid:15987475 PMCid:1175026
Le Maitre CL, Freemont AJ and Hoyland JA (2006). Human disc degeneration is associated with increased MMP 7 expression. Biotech. Histochem. 81: 125-131.
http://dx.doi.org/10.1080/10520290601005298
PMid:17129995
Le Maitre CL, Freemont AJ and Hoyland JA (2007a). Accelerated cellular senescence in degenerate intervertebral discs: a possible role in the pathogenesis of intervertebral disc degeneration. Arthritis Res. Ther. 9: R45.
http://dx.doi.org/10.1186/ar2198
PMid:17498290 PMCid:2206356
Le Maitre CL, Hoyland JA and Freemont AJ (2007b). Catabolic cytokine expression in degenerate and herniated human intervertebral discs: IL-1beta and TNFalpha expression profile. Arthritis Res. Ther. 9: R77.
http://dx.doi.org/10.1186/ar2275
PMid:17688691 PMCid:2206382
Le Maitre CL, Pockert A, Buttle DJ, Freemont AJ, et al. (2007c). Matrix synthesis and degradation in human intervertebral disc degeneration. Biochem. Soc. Trans. 35: 652-655.
http://dx.doi.org/10.1042/BST0350652
PMid:17635113
Luoma K, Riihimaki H, Luukkonen R, Raininko R, et al. (2000). Low back pain in relation to lumbar disc degeneration. Spine 25: 487-492.
http://dx.doi.org/10.1097/00007632-200002150-00016
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http://dx.doi.org/10.1097/00007632-199509150-00002
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Nowak JM, Grzanka A, Zuryn A and Stepien A (2008). The Rho protein family and its role in the cellular cytoskeleton. Postepy Hig. Med. Dosw. 62: 110-117.
Pearson G, Robinson F, Beers GT, Xu BE, et al. (2001). Mitogen-activated protein (MAP) kinase pathways: regulation and physiological functions. Endocr. Rev. 22: 153-183.
http://dx.doi.org/10.1210/er.22.2.153
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Peng B, Hao J, Hou S, Wu W, et al. (2006). Possible pathogenesis of painful intervertebral disc degeneration. Spine 31: 560-566.
http://dx.doi.org/10.1097/01.brs.0000201324.45537.46
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Pratsinis H and Kletsas D (2008). Growth factors in intervertebral disc homeostasis. Connect. Tissue Res. 49: 273-276.
http://dx.doi.org/10.1080/03008200802147951
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Shannon P, Markiel A, Ozier O, Baliga NS, et al. (2003). Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13: 2498-2504.
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Siripurapu V, Meth J, Kobayashi N and Hamaguchi M (2005). DBC2 significantly influences cell-cycle, apoptosis, cytoskeleton and membrane-trafficking pathways. J. Mol. Biol. 346: 83-89.
http://dx.doi.org/10.1016/j.jmb.2004.11.043
PMid:15663929
Sommer C and Kress M (2004). Recent findings on how proinflammatory cytokines cause pain: peripheral mechanisms in inflammatory and neuropathic hyperalgesia. Neurosci. Lett. 361: 184-187.
http://dx.doi.org/10.1016/j.neulet.2003.12.007
PMid:15135924
Szklarczyk D, Franceschini A, Kuhn M, Simonovic M, et al. (2011). The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res. 39: D561-D568.
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Urban JP and Roberts S (2003). Degeneration of the intervertebral disc. Arthritis Res. Ther. 5: 120-130.
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“Paeonia (Paeoniaceae) expressed sequence tag-derived microsatellite markers transferred to Paeonia delavayi”, vol. 12, pp. 1278-1282, 2013.
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La Rota M, Kantety RV, Yu JK and Sorrells ME (2005). Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley. BMC Genomics 6: 23.
http://dx.doi.org/10.1186/1471-2164-6-23
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Li WJ, Ma H, Li ZH, Wan YM, et al. (2012b). Thirty-four Musa (Musaceae) expressed sequence tag-derived microsatellite markers transferred to Musella lasiocarpa. Genet. Mol. Res. 11: 2094-2098.
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“Molecular cytogenetic identification of a wheat (Triticum aestivum)-American dune grass (Leymus mollis) translocation line resistant to stripe rust”, vol. 11, pp. 3198-3206, 2012.
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Kishii M, Wang RR and Tsujimoto H (2003). Characteristics and behaviour of the chromosomes of Leymus mollis and L. racemosus (Triticeae, Poaceae) during mitosis and meiosis. Chromosome Res 11: 741-748.
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