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“DNA profiling of sugarcane genotypes using randomly amplified polymorphic DNA”, vol. 9, pp. 471-483, 2010.
, Arceneaux G (1967). Cultivated sugarcane of the world and their botanical derivation. Proc. Int. Soc. Sugar Cane Technol. 12: 844-845.
Brandes EW (1958). Origin, Classification and Characteristics. In: Sugarcane (Saccharum officinarum L.) (Artschwager E and Brandes EW, eds.). U.S. Department of Agriculture Handbook, Washington D.C., 1-35.
Brar DS (2002). Molecular Marker Assisted Breeding. In: Molecular Techniques in Crop Improvement (Jain SM, Brar DS and Ahloowalia BS, eds.). Kluwer Academic Publishers, Netherlands, 55-83.
Burner DM, Pan YB and Webster RD (1997). Genetic diversity of North American and Old World Saccharum assessed by RAPD analysis. Genet. Res. Crop Evol. 44: 235-240.
http://dx.doi.org/10.1023/A:1008631731506
Daniels J and Roach BT (1987). Taxonomy and Evolution in Sugarcane. In: Sugarcane Improvement Through Breeding (Heinz DJ, ed.). Elsevier Press, Amsterdam, 7-84.
PMid:3507886
Deren CW (1995). Genetic base of U.S. mainland sugarcane. Crop Sci. 35: 1195-1199.
http://dx.doi.org/10.2135/cropsci1995.0011183X003500040047x
Doyle JJ and Doyle JL (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19: 11-15.
Ellsworth DL, Rittenhouse KD and Honeycutt RL (1993). Artifactual variation in randomly amplified polymorphic DNA banding patterns. Biotechniques 14: 214-217.
PMid:8431284
Glaszmann JC, Fautret A, Noyer JL, Feldmann P, et al. (1989). Biochemical genetic markers in sugarcane. Theor. Appl. Genet. 78: 537-543.
http://dx.doi.org/10.1007/BF00290839
Glaszmann JC, Lu YK and Lanaud C (1990). Variation of nuclear ribosomal DNA in sugarcane. J. Genet. Breed. 44: 191-198.
Grassl CO (1977). The origin of the sugar producing cultivars of Saccharum. Sugarcane Breed. Newsl. 39: 8-33.
Grivet L and Arruda P (2002). Sugarcane genomics: depicting the complex genome of an important tropical crop. Curr. Opin. Plant Biol. 5: 122-127.
http://dx.doi.org/10.1016/S1369-5266(02)00234-0
Harvey M and Botha FC (1996). Use of PCR-based methodologies for the determination of DNA diversity between Saccharum varieties. Euphytica 89: 257-265.
http://dx.doi.org/10.1007/BF00034614
Kresovich S, Williams JGK, McFerson JR, Routman EJ, et al. (1992). Characterization of genetic identities and relationships of Brassica oleracea L. via a random amplified polymorphic DNA assay. Theor. Appl. Genet. 85: 190-196.
http://dx.doi.org/10.1007/BF00222859
Lu YH, D'Hont A, Walker DIT, Rao PS, et al. (1994). Relationships among ancestral species of sugarcane revealed with RFLP using single copy maize nuclear probes. Euphytica 78: 7-18.
Micheli MR, Bova R, Pascale E and D'Ambrosio E (1994). Reproducible DNA fingerprinting with the random amplified polymorphic DNA (RAPD) method. Nucleic Acids Res. 22: 1921-1922.
http://dx.doi.org/10.1093/nar/22.10.1921
PMid:8208620 PMCid:308096
Michelmore RW, Paran I and Kesseli RV (1991). Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. Proc. Natl. Acad. Sci. U. S. A. 88: 9828-9832.
http://dx.doi.org/10.1073/pnas.88.21.9828
PMid:1682921 PMCid:52814
Nair NV, Nair S, Sreenivasan TV and Mohan M (1999). Analysis of genetic diversity and phylogeny in Saccharum and related genera using RAPD markers. Genet. Res. Crop Evol. 46: 73-79.
http://dx.doi.org/10.1023/A:1008696808645
Nair NV, Selvi A, Sreenivasan TV and Pushpalatha KN (2002). Molecular diversity in Indian sugarcane cultivars as revealed by randomly amplified DNA polymorphisms. Euphytica 127: 219-225.
http://dx.doi.org/10.1023/A:1020234428681
Nei M (1978). Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89: 583-590.
PMid:17248844 PMCid:1213855
Pan YB, Miller J, Schnell R, Richard E, et al. (2003). Application of Microsatellite and RAPD Fingerprints in the Florida Sugarcane Variety Program. In: Plant Animal Genome VX Conference, Houma, Abstract 43.
Pan YB, Burner DM, Legendre BL, Grisham MP, et al. (2005). An assessment of the genetic diversity within a collection of Saccharum spontaneum L. with RAPD-PCR. Genet. Res. Crop Evol. 51: 895-903.
http://dx.doi.org/10.1007/s10722-005-1933-1
Pillay M and Kenny ST (1995). Anomalies in direct pair-wise comparisons of RAPD fragments for genetic analysis. Biotechniques 19: 694-6, 698.
PMid:8588897
Reeves J, Law J, Donin P, Koebner MR, et al. (1999). Changes over time in the genetic diversity of UK cereal crops. Available at National Institute of Agricultural Botany [http://apps3.fao.org/wiews/Prague/Paper12.htm], Cambridge.
Skroch P and Nienhuis J (1995). Impact of scoring error and reproducibility RAPD data on RAPD based estimates of genetic distance. Theor. Appl. Genet. 91: 1086-1091.
http://dx.doi.org/10.1007/BF00223923
Sobral BWS and Honeycut RJ (1993). High output genetic mapping of polyploids using PCR-generated markers. Theor. Appl. Genet. 86: 105-112.
http://dx.doi.org/10.1007/BF00223814
Sreenivasan TV, Ahloowalia BS and Heinz DJ (1987). Cytogenetics. In: Sugarcane Improvement Through Breeding (Heinz DJ, ed.). Elsevier, Amsterdam, 211-253.
Swanson T (1996). Global values of biological diversity: the public interest in the conservation of plant genetic resources for agriculture. Plant Genet. Res. Newsl. 105: 1-7.
Thormann CE, Ferreira ME, Camargo LEA, Tivang JG, et al. (1994). Comparison of RFLP and RAPD markers to estimating genetic relationships within and among cruciferous species. Theor. Appl. Genet. 88: 973-980.
http://dx.doi.org/10.1007/BF00220804
Weir BS (1990). Genetic Data Analysis: Methods for Discrete Population Genetic Data. Sinauer Associates Inc., Sunderland.
Wolfe AD and Liston A (1998). Contribution of PCR-based Methods to Plant Systematics and Evolutionary Biology. In: Molecular Systematics of Plants II: DNA Sequencing (Soltis DE, Soltis PS and Doyle JJ, eds.). Kluwer, Boston, 43-86.
http://dx.doi.org/10.1007/978-1-4615-5419-6_2
Yang X and Quiros C (1993). Identification and classification of celery cultivars with RAPD markers. Theor. Appl. Genet. 86: 205-212.
http://dx.doi.org/10.1007/BF00222080
“Genetic studies of “noble cane” for identification and exploitation of genetic markers”, vol. 9, pp. 1011-1022, 2010.
, Callen DF, Thompson AD, Shen Y, Phillips HA et al. (1993). Incidence and origin of "null" alleles in the (AC)n microsatellite markers. Am. J. Hum. Genet. 52: 922-927.
PMid:8488841 PMCid:1682051
Cordeiro GM, Pan YB and Henry RJ (2003). Sugarcane microsatellites for the assessment of genetic diversity in sugarcane germplasm. Plant Sci. 165: 181-189.
http://dx.doi.org/10.1016/S0168-9452(03)00157-2
D'Hont A, Rao PS, Feldmann P, Grivet L, et al. (1995). Identification and characterisation of sugarcane intergeneric hybrids, Saccharum officinarum x Erianthus arundinaceus, with molecular markers and DNA in situ hybridisation. Theor. Appl. Genet. 91: 320-326.
http://dx.doi.org/10.1007/BF00220894
D'Hont A, Grivet L, Feldmann P, Glaszmann JC, et al. (1996). Characterisation of the double genome structure of modern sugarcane cultivars (Saccharum spp.) by molecular cytogenetics. Mol. Gen. Genet. 250: 405-413.
http://dx.doi.org/10.1007/BF02174028
PMid:8602157
Daniels J and Roach BT (1987). Taxonomy and Evolution. In: Sugarcane Improvement Through Breeding (Heinz DJ, ed.). Elsevier Press, Amsterdam, 7-84.
PMid:3507886
Dayanandan S, Rajora OP and Bawa KS (1998). Isolation and characterization of microsatellites in trembling aspen (Populus tremuloides). Theor. Appl. Genet. 96: 950-956.
http://dx.doi.org/10.1007/s001220050825
Devey ME, Bell JC, Smith DN, Neale DB, et al. (1996). A genetic linkage map for Pinus radiata based on RFLP, RAPD, and microsatellite markers. Theor. Appl. Genet. 92: 673-679.
http://dx.doi.org/10.1007/BF00226088
Germplasm Resources Information Network (GRIN) (2004). Germplasm Resources Information Network. Available at [http://www.ars-grin.gov/cgi-bin/npgs/html/genform.pl]. Accessed June 1, 2004.
Glaszmann JC, Fautret A, Noyer JL, Feldmann P et al. (1989). Biochemical genetic markers in sugarcane. Theor. Appl. Genet. 78: 537-543.
http://dx.doi.org/10.1007/BF00290839
Ha S, Moore PH, Heinz D, Kato S, et al. (1999). Quantitative chromosome map of the polyploid Saccharum spontaneum by multicolor fluorescence in situ hybridization and imaging methods. Plant Mol. Biol. 39: 1165-1173.
http://dx.doi.org/10.1023/A:1006133804170
PMid:10380803
Hoisington D, Khairallah M and González D (1994). Laboratory Protocols: CIMMYT Applied Molecular Genetics Laboratory. CIMMYT, Mexico.
Hu G (1993). DNA polymerase-catalyzed addition of non templated extra nucleotides to the 3' end of a DNA fragment. DNA Cell Biol. 12: 763-770.
http://dx.doi.org/10.1089/dna.1993.12.763
PMid:8397833
Lu YH, D'Hont A, Paulet F, Grivet L, et al. (1994). Molecular diversity and genome structure in modern sugarcane varieties. Euphytica 78: 217-226.
http://dx.doi.org/10.1007/BF00027520
McIntyre L, Aitken K, Berding N, Casu R, et al (2001). Identification of DNA Markers Linked to Agronomic Traits in Sugarcane in Australia. In: International Society of Sugar Cane Technologists. Proceedings of the XXIV Congress, Brisbane, Australia, 17-21 September. Australian Society of Sugar Cane Technologists, Brisbane, 560-562.
Ming R, Liu SC, Moore PH, Irvine JE, et al. (2001). QTL analysis in a complex autopolyploid: genetic control of sugar content in sugarcane. Genome Res. 11: 2075-2084.
http://dx.doi.org/10.1101/gr.198801
PMid:11731498 PMCid:311218
Naidu KM and Sreenivasan TV (1987). Conservation of the Sugarcane Germplasm. In: Corpersucar International Sugarcane Breeding Workshop. Copersucar, São Paulo, 33-53.
Nair NV, Nair S, Sreenivasan TV and Mohan M (1999). Analysis of genetic diversity and phylogeny in Saccharum and related genera using RAPD markers. Genet. Res. Crop Evol. 46: 73-79.
http://dx.doi.org/10.1023/A:1008696808645
Nei M (1972). Genetic distance between populations. Am. Nat. 106: 283-292.
http://dx.doi.org/10.1086/282771
Paglia GP, Olivieri AM and Morgante M (1998). Towards second-generation STS (sequence-tagged sites) linkage maps in conifers: a genetic map of Norway spruce (Picea abies K.). Mol. Gen. Genet. 258: 466-478.
http://dx.doi.org/10.1007/s004380050757
PMid:9669328
Pan YB, Cordeiro GM, Henry RJ and Schnell RJ (2002). Microsatellite Fingerprints of Louisiana Sugarcane Varieties and Breeding Lines. In: Plant, Animal and Microbe Genomes X Conference, 12-16 January, San Diego.
Piperidis G, Christopher MJ, Carroll BJ, Berding N, et al. (2000). Molecular contribution to selection of intergeneric hybrids between sugarcane and the wild species Erianthus arundinaceus. Genome 43: 1033-1037.
PMid:11195335
Selvi A, Nair NV, Balasundaram N and Mohapatra T (2003). Evaluation of maize microsatellite markers for genetic diversity analysis and fingerprinting in sugarcane. Genome 46: 394-403.
http://dx.doi.org/10.1139/g03-018
PMid:12834055
Sreenivasan TV, Ahlowalia BS and Heinz D (1987). Germplasm Collection, Maintenance and Use. In: Sugarcane Improvement Through Breeding (Heinz DJ, ed.). Vol. 11. Elsevier, New York, 143-210.
van de Ven WTG and McNicol RJ (1996). Microsatellites as DNA markers in Sitka spruce. Theor. Appl. Genet. 93: 613-617.
http://dx.doi.org/10.1007/BF00417956
Weising K, Winter P, Hüttle PB and Kahl G (1997). Microsatellite markers for molecular breeding. J. Crop Prod. 1: 113-143.
http://dx.doi.org/10.1300/J144v01n01_06
“Phylogenetic relationships among Saccharum clones in Pakistan revealed by RAPD markers”, vol. 9, pp. 1673-1682, 2010.
, Aggarwal RK, Brar DS, Nandi S, Huang N, et al. (1999). Phylogenetic relationships among Oryza species revealed by AFLP markers. Theor. Appl. Genet. 98: 1320-1328.
http://dx.doi.org/10.1007/s001220051198
Al-Janabi SM, McClelland M, Petersen C and Sobral BWS (1944). Phylogenetic analysis of organellar DNA sequences in the Andropogoneae: Saccharinae. Theor. Appl. Genet. 88: 933-944.
Angiolillo A, Mencuccini M and Baldoni L (1999). Olive genetic diversity assessed using amplified fragment length polymorphisms. Theor. Appl. Genet. 98: 411-421.
http://dx.doi.org/10.1007/s001220051087
Arceneaux G (1967). Cultivated sugarcane of the world and their botanical derivation. Proc. Int. Soc. Sugar Cane Technol. 12: 844-845.
Barker JH, Matthes M, Arnold GM, Edwards KJ, et al. (1999). Characterisation of genetic diversity in potential biomass willows (Salix spp.) by RAPD and AFLP analyses. Genome 42: 173-183.
PMid:10231956
Burner DM, Pan YB and Webster RD (1997). Genetic diversity of North American and Old World Saccharum assessed by RAPD analysis. Genet. Resour. Crop Evol. 44: 235-240.
http://dx.doi.org/10.1023/A:1008631731506
Burnquist WL, Sorrelles ME and Tanksley S (1995). Characterization of genetic variability in Saccharum germplasm by means of restriction fragment length polymorphism (RFLP) analysis. Proc. Int. Soc. Sugar Cane Technol. 21: 355-365.
D'Hont A, Lu YH, Feldmann P and Glaszmann JC (1993). Cytoplasmic diversity in sugar cane revealed by heterologous probes. Sugar Cane 1: 12-15.
Harvey H, Huckett BI and Botha FC (1994). Use of polymerase chain reaction and random amplification of polymorphic DNAs for the determination of genetic distances between 21 sugarcane varieties. Proc. S. Afr. Sugar Technol. Assoc. 68: 36-40.
Harvey M and Botha FC (1996). Use of PCR-based methodologies for the determination of DNA diversity between Saccharum varieties. Euphytica 89: 257-265.
http://dx.doi.org/10.1007/BF00034614
Hoisington D, Khairallah M and González D (1994). Laboratory Protocols: CIMMYT Applied Molecular Genetics Laboratory. CIMMYT, Mexico.
Hokanson SC, Szewc-McFadden AK, Lamboy WF and McFerson JR (1998). Microsatellite (SSR) markers reveal genetic identities, genetic diversity and relationships in a Malus x domestica borkh. core subset collection. Theor. Appl. Genet. 97: 671-683.
http://dx.doi.org/10.1007/s001220050943
Lande R and Thompson R (1990). Efficiency of marker-assisted selection in the improvement of quantitative traits. Genetics 124: 743-756.
PMid:1968875 PMCid:1203965
Lu YH, D'Hont A, Walker DIT, Rao PS, et al. (1994). Relationships among ancestral species of sugarcane revealed with RFLP using single-copy maize nuclear probes. Euphytica 78: 7-18.
Mukherjee SK (1957). Origin and distribution of Saccharum. Bot. Gaz. 119: 55-61.
http://dx.doi.org/10.1086/335962
Nair NV, Nair S, Sreenivasan TV and Mohan M (1999). Analysis of genetic diversity and phylogeny in Saccharum and related genera using RAPD markers. Genet. Resour. Crop Evol. 46: 73-79.
http://dx.doi.org/10.1023/A:1008696808645
Nair NV, Selvi A, Sreenivasan TV and Pushpalatha KN (2002). Molecular diversity in Indian sugarcane cultivars as revealed by randomly amplified DNA polymorphisms. Euphytica 127: 219-225.
http://dx.doi.org/10.1023/A:1020234428681
Nakajima Y, Oeda K and Yamamoto T (1998). Characterization of genetic diversity of nuclear and mitochondrial genomes in Daucus varieties by RAPD and AFLP. Plant Cell Rep. 17: 848-853.
http://dx.doi.org/10.1007/s002990050496
Nei M (1978). Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89: 583-590.
PMid:17248844 PMCid:1213855
Orozco-Castillo C, Chalmers KJ, Waugh R and Powell W (1994). Detection of genetic diversity and selective gene introgression in coffee using RAPD markers. Theor. Appl. Genet. 87: 934-940.
http://dx.doi.org/10.1007/BF00225787
Pan Y, Miller JD, Schnell Ii RJ, Richard EP Jr, et al. (2003). Application of Microsatellite and RAPD Fingerprints in the Florida Sugarcane Variety Program. In: Plant and Animal Genome Conference, Town & Country Convention Center, January 13-17, San Diego, 43.
Sobral BWS, Braga DPV, LaHood ES and Keim P (1994). Phylogenetic analysis of chloroplast restriction enzyme site mutations in the Saccharinae Griseb. subtribe of the Andropogoneae Dumort. tribe. Theor. Appl. Genet. 87: 843-853.
http://dx.doi.org/10.1007/BF00221137
Stiles JI, Lemme C, Sondur S, Morshid MB, et al. (1993). Using randomly amplified polymorphic DNA for evaluating genetic relationships among papaya cultivars. Theor. Appl. Genet. 85: 697-701.
Stuber CW, Polacco M and Senior ML (1999). Synergy of empirical breeding, marker-assisted selection, and genomics to increase crop yield potential. Crop. Sci. 39: 1571-1583.
http://dx.doi.org/10.2135/cropsci1999.3961571x
Wang ZY, Second G and Tanksley SD (1992). Polymorphism and phylogenetic relationships among species in the genus Oryza as determined by analysis of nuclear RFLPs. Theor. Appl. Genet. 83: 565-581.
http://dx.doi.org/10.1007/BF00226900
Weir BS (1990). Genetic Data Analysis: Methods for Discrete Population Genetic Data. Sinauer Associates Inc., Sunderland.
Williams JG, Kubelik AR, Livak KJ, Rafalski JA, et al. (1990). DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18: 6531-6535.
http://dx.doi.org/10.1093/nar/18.22.6531
PMid:1979162 PMCid:332606