Publications

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2012
Z. N. Meng, Yang, S., Fan, B., Wang, L., and Lin, H. R., Genetic variation and balancing selection at MHC class II exon 2 in cultured stocks and wild populations of orange-spotted grouper (Epinephelus coioides), vol. 11, pp. 3869-3881, 2012.
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Immunogenetics 59: 417-426. http://dx.doi.org/10.1007/s00251-007-0205-y PMid:17351770   Beaumont MA and Balding DJ (2004). Identifying adaptive genetic divergence among populations from genome scans. Mol. Ecol. 13: 969-980. http://dx.doi.org/10.1111/j.1365-294X.2004.02125.x PMid:15012769   Bernatchez L and Landry C (2003). MHC studies in nonmodel vertebrates: what have we learned about natural selection in 15 years? J. Evol. Biol. 16: 363-377. http://dx.doi.org/10.1046/j.1420-9101.2003.00531.x PMid:14635837   Brown JL and Eklund A (1994). Kin recognition and the major histocompatibility complex: an integrative review. Am. Nat. 143: 435-461. http://dx.doi.org/10.1086/285612   Brown JH, Jardetzky TS, Gorga JC, Stern LJ, et al. (1993). Three-dimensional structure of the human class II histocompatibility antigen HLA-DR1. Nature 364: 33-39. http://dx.doi.org/10.1038/364033a0 PMid:8316295   Clarke B and Kirby DR (1966). Maintenance of histocompatibility polymorphisms. 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Perspective: highly variable loci and their interpretation in evolution and conservation. Evolution 53: 313-318. http://dx.doi.org/10.2307/2640768   Hill AV (1999). The immunogenetics of resistance to malaria. Proc. Assoc. Am. Physicians 111: 272-277. http://dx.doi.org/10.1046/j.1525-1381.1999.99234.x PMid:10417733   Hill AV, Allsopp CE, Kwiatkowski D, Anstey NM, et al. (1991). Common west African HLA antigens are associated with protection from severe malaria. Nature 352: 595-600. http://dx.doi.org/10.1038/352595a0 PMid:1865923   Hughes AL and Nei M (1988). Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection. Nature 335: 167-170. http://dx.doi.org/10.1038/335167a0 PMid:3412472   Hughes AL and Yeager M (1998). Natural selection at major histocompatibility complex loci of vertebrates. Annu. Rev. Genet. 32: 415-435. http://dx.doi.org/10.1146/annurev.genet.32.1.415 PMid:9928486   Hung PH, Thuy TTN, Supawadee P and Uthairat N (2009). Microsatellites revealed no genetic differentiation between hatchery and contemporary wild populations of striped catfish, Pangasianodon hypophthalmus (Sauvage 1878) in Vietnam. Aquaculture 291: 154-160. http://dx.doi.org/10.1016/j.aquaculture.2009.03.017   Jones EY, Fugger L, Strominger JL and Siebold C (2006). MHC class II proteins and disease: a structural perspective. Nat. Rev. Immunol. 6: 271-282. http://dx.doi.org/10.1038/nri1805 PMid:16557259   Jordan WC and Bruford MW (1998). New perspectives on mate choice and the MHC. Heredity 81: 239-245. http://dx.doi.org/10.1038/sj.hdy.6884280 PMid:9800367   Karaiskou N, Moran P, Georgitsakis G, Abatzopoulos TJ, et al. (2010). High allelic variation of MHC class II alpha antigen and the role of selection in wild and cultured Sparus aurata populations. Hydrobiologia 638: 11-20. http://dx.doi.org/10.1007/s10750-009-0001-9   Klein J (1986). Natural History of the Major Histocompatibility Complex. Wiley, New York.   Nei M and Gojobori T (1986). Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3: 418-426. PMid:3444411   Piertney SB and Oliver MK (2006). The evolutionary ecology of the major histocompatibility complex. Heredity 96: 7-21. PMid:16094301   Rokas A, Atkinson RJ, Webster L, Csoka G, et al. (2003). Out of Anatolia: longitudinal gradients in genetic diversity support an eastern origin for a circum-Mediterranean oak gallwasp Andricus quercustozae. Mol. Ecol. 12: 2153- 2174. http://dx.doi.org/10.1046/j.1365-294X.2003.01894.x PMid:12859636   Rozas J, Sanchez-Del Barrio JC, Messeguer X and Rozas R (2003). DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497. http://dx.doi.org/10.1093/bioinformatics/btg359 PMid:14668244   Schad J, Dechmann DK, Voigt CC and Sommer S (2011). MHC class II DRB diversity, selection pattern and population structure in a neotropical bat species, Noctilio albiventris. Heredity 107: 115-126. http://dx.doi.org/10.1038/hdy.2010.173 PMid:21245894 PMCid:3178406   Strand T, Westerdahl H, Hoglund J, Alatalo V, et al. (2007). The Mhc class II of the Black grouse (Tetrao tetrix) consists of low numbers of B and Y genes with variable diversity and expression. Immunogenetics 59: 725-734. http://dx.doi.org/10.1007/s00251-007-0234-6 PMid:17653538   Summers K, Roney KE, da Silva J, Capraro G, et al. (2009). Divergent patterns of selection on the DAB and DXB MHC class II loci in Xiphophorus fishes. Genetica 135: 379-390. http://dx.doi.org/10.1007/s10709-008-9284-4 PMid:18600302   Tamura K, Peterson D, Peterson N, Stecher G, et al. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28: 2731-2739. http://dx.doi.org/10.1093/molbev/msr121 PMid:21546353 PMCid:3203626   Tong JC, Bramson J, Kanduc D, Chow S, et al. (2006). Modeling the bound conformation of Pemphigus vulgaris-associated peptides to MHC Class II DR and DQ alleles. Immunome Res. 2: 1. http://dx.doi.org/10.1186/1745-7580-2-1 PMid:16426456 PMCid:1395305   Wang L, Meng Z, Liu X, Zhang Y, et al. (2011). genetic diversity and differentiation of the orange-spotted grouper (Epinephelus coioides) between and within cultured stocks and wild populations inferred from microsatellite DNA Analysis. Int. J. Mol. Sci. 12: 4378-4394. http://dx.doi.org/10.3390/ijms12074378 PMid:21845084 PMCid:3155357   Westerdahl H, Wittzell H, von Schantz T and Bensch S (2004). MHC class I typing in a songbird with numerous loci and high polymorphism using motif-specific PCR and DGGE. Heredity 92: 534-542. http://dx.doi.org/10.1038/sj.hdy.6800450 PMid:15162116   Xu TJ, Sun YN and Chen SL (2010). Allelic variation, balancing selection and positive selected sites detected from MHC class Ia gene of olive flounder. Genetica 138: 1251-1259. http://dx.doi.org/10.1007/s10709-010-9524-2 PMid:21110065   Yang Z (1997). PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13: 555-556. PMid:9367129   Yang Z, Wong WS and Nielsen R (2005). Bayes empirical bayes inference of amino acid sites under positive selection. Mol. Biol. Evol. 22: 1107-1118. http://dx.doi.org/10.1093/molbev/msi097 PMid:15689528