Publications
Found 3 results
Filters: Author is B. Fan [Clear All Filters]
“Detection of targets and their mechanisms for early diagnosis of traumatic deep vein thrombosis”, vol. 14, pp. 2413-2421, 2015.
, “TGF-β1 and Serpine 1 expression changes in traumatic deep vein thrombosis”, vol. 14, pp. 13835-13842, 2015.
, “Genetic variation and balancing selection at MHC class II exon 2 in cultured stocks and wild populations of orange-spotted grouper (Epinephelus coioides)”, vol. 11, pp. 3869-3881, 2012.
,
Alcaide M, Edwards SV, Negro JJ, Serrano D, et al. (2008). Extensive polymorphism and geographical variation at a positively selected MHC class II B gene of the lesser kestrel (Falco naumanni). Mol. Ecol. 17: 2652-2665.
http://dx.doi.org/10.1111/j.1365-294X.2008.03791.x
PMid:18489548
Anisimova M, Nielsen R and Yang Z (2003). Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites. Genetics 164: 1229-1236.
PMid:12871927 PMCid:1462615
Anmarkrud JA, Johnsen A, Bachmann L and Lifjeld JT (2010). Ancestral polymorphism in exon 2 of bluethroat (Luscinia svecica) MHC class II B genes. J. Evol. Biol. 23: 1206-1217.
http://dx.doi.org/10.1111/j.1420-9101.2010.01999.x
PMid:20456568
Axtner J and Sommer S (2007). Gene duplication, allelic diversity, selection processes and adaptive value of MHC class II DRB genes of the bank vole, Clethrionomys glareolus. Immunogenetics 59: 417-426.
http://dx.doi.org/10.1007/s00251-007-0205-y
PMid:17351770
Beaumont MA and Balding DJ (2004). Identifying adaptive genetic divergence among populations from genome scans. Mol. Ecol. 13: 969-980.
http://dx.doi.org/10.1111/j.1365-294X.2004.02125.x
PMid:15012769
Bernatchez L and Landry C (2003). MHC studies in nonmodel vertebrates: what have we learned about natural selection in 15 years? J. Evol. Biol. 16: 363-377.
http://dx.doi.org/10.1046/j.1420-9101.2003.00531.x
PMid:14635837
Brown JL and Eklund A (1994). Kin recognition and the major histocompatibility complex: an integrative review. Am. Nat. 143: 435-461.
http://dx.doi.org/10.1086/285612
Brown JH, Jardetzky TS, Gorga JC, Stern LJ, et al. (1993). Three-dimensional structure of the human class II histocompatibility antigen HLA-DR1. Nature 364: 33-39.
http://dx.doi.org/10.1038/364033a0
PMid:8316295
Clarke B and Kirby DR (1966). Maintenance of histocompatibility polymorphisms. Nature 211: 999-1000.
http://dx.doi.org/10.1038/211999a0
PMid:6007869
Davies CJ, Andersson L, Mikko S, Ellis SA, et al. (1997). Nomenclature for factors of the BoLA system, 1996: report of the ISAG BoLA Nomenclature Committee. Anim. Genet. 28: 159-168.
http://dx.doi.org/10.1111/j.1365-2052.1997.00106.x
Dengjel J, Schoor O, Fischer R, Reich M, et al. (2005). Autophagy promotes MHC class II presentation of peptides from intracellular source proteins. Proc. Natl. Acad. Sci. U. S. A. 102: 7922-7927.
http://dx.doi.org/10.1073/pnas.0501190102
PMid:15894616 PMCid:1142372
Ekblom R, Saether SA, Jacobsson P, Fiske P, et al. (2007). Spatial pattern of MHC class II variation in the great snipe (Gallinago media). Mol. Ecol. 16: 1439-1451.
http://dx.doi.org/10.1111/j.1365-294X.2007.03281.x
PMid:17391268
Excoffier L, Laval G and Schneider S (2005). Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1: 47-50.
PMCid:2658868
Goudet J (2002). Fstat, A Program to Estimate and Test Gene Diversities and Fixation Indices (Version 2.9.3.2). Available at [http://www2.unil.ch/popgen/softwares/fstat.htm]. Accessed February 8, 2012.
Grimholt U, Larsen S, Nordmo R, Midtlyng P, et al. (2003). MHC polymorphism and disease resistance in Atlantic salmon (Salmo salar); facing pathogens with single expressed major histocompatibility class I and class II loci. Immunogenetics 55: 210-219.
http://dx.doi.org/10.1007/s00251-003-0567-8
PMid:12811427
Hall TA (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids Symp. Ser. 41: 95-98.
Hauswaldt JS, Stuckas H, Pfautsch S and Tiedemann R (2007). Molecular characterization of MHC class II in a nonmodel anuran species, the fire-bellied toad Bombina bombina. Immunogenetics 59: 479-491.
http://dx.doi.org/10.1007/s00251-007-0210-1
PMid:17406862
Hedrick PW (1999). Perspective: highly variable loci and their interpretation in evolution and conservation. Evolution 53: 313-318.
http://dx.doi.org/10.2307/2640768
Hill AV (1999). The immunogenetics of resistance to malaria. Proc. Assoc. Am. Physicians 111: 272-277.
http://dx.doi.org/10.1046/j.1525-1381.1999.99234.x
PMid:10417733
Hill AV, Allsopp CE, Kwiatkowski D, Anstey NM, et al. (1991). Common west African HLA antigens are associated with protection from severe malaria. Nature 352: 595-600.
http://dx.doi.org/10.1038/352595a0
PMid:1865923
Hughes AL and Nei M (1988). Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection. Nature 335: 167-170.
http://dx.doi.org/10.1038/335167a0
PMid:3412472
Hughes AL and Yeager M (1998). Natural selection at major histocompatibility complex loci of vertebrates. Annu. Rev. Genet. 32: 415-435.
http://dx.doi.org/10.1146/annurev.genet.32.1.415
PMid:9928486
Hung PH, Thuy TTN, Supawadee P and Uthairat N (2009). Microsatellites revealed no genetic differentiation between hatchery and contemporary wild populations of striped catfish, Pangasianodon hypophthalmus (Sauvage 1878) in Vietnam. Aquaculture 291: 154-160.
http://dx.doi.org/10.1016/j.aquaculture.2009.03.017
Jones EY, Fugger L, Strominger JL and Siebold C (2006). MHC class II proteins and disease: a structural perspective. Nat. Rev. Immunol. 6: 271-282.
http://dx.doi.org/10.1038/nri1805
PMid:16557259
Jordan WC and Bruford MW (1998). New perspectives on mate choice and the MHC. Heredity 81: 239-245.
http://dx.doi.org/10.1038/sj.hdy.6884280
PMid:9800367
Karaiskou N, Moran P, Georgitsakis G, Abatzopoulos TJ, et al. (2010). High allelic variation of MHC class II alpha antigen and the role of selection in wild and cultured Sparus aurata populations. Hydrobiologia 638: 11-20.
http://dx.doi.org/10.1007/s10750-009-0001-9
Klein J (1986). Natural History of the Major Histocompatibility Complex. Wiley, New York.
Nei M and Gojobori T (1986). Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3: 418-426.
PMid:3444411
Piertney SB and Oliver MK (2006). The evolutionary ecology of the major histocompatibility complex. Heredity 96: 7-21.
PMid:16094301
Rokas A, Atkinson RJ, Webster L, Csoka G, et al. (2003). Out of Anatolia: longitudinal gradients in genetic diversity support an eastern origin for a circum-Mediterranean oak gallwasp Andricus quercustozae. Mol. Ecol. 12: 2153- 2174.
http://dx.doi.org/10.1046/j.1365-294X.2003.01894.x
PMid:12859636
Rozas J, Sanchez-Del Barrio JC, Messeguer X and Rozas R (2003). DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.
http://dx.doi.org/10.1093/bioinformatics/btg359
PMid:14668244
Schad J, Dechmann DK, Voigt CC and Sommer S (2011). MHC class II DRB diversity, selection pattern and population structure in a neotropical bat species, Noctilio albiventris. Heredity 107: 115-126.
http://dx.doi.org/10.1038/hdy.2010.173
PMid:21245894 PMCid:3178406
Strand T, Westerdahl H, Hoglund J, Alatalo V, et al. (2007). The Mhc class II of the Black grouse (Tetrao tetrix) consists of low numbers of B and Y genes with variable diversity and expression. Immunogenetics 59: 725-734.
http://dx.doi.org/10.1007/s00251-007-0234-6
PMid:17653538
Summers K, Roney KE, da Silva J, Capraro G, et al. (2009). Divergent patterns of selection on the DAB and DXB MHC class II loci in Xiphophorus fishes. Genetica 135: 379-390.
http://dx.doi.org/10.1007/s10709-008-9284-4
PMid:18600302
Tamura K, Peterson D, Peterson N, Stecher G, et al. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28: 2731-2739.
http://dx.doi.org/10.1093/molbev/msr121
PMid:21546353 PMCid:3203626
Tong JC, Bramson J, Kanduc D, Chow S, et al. (2006). Modeling the bound conformation of Pemphigus vulgaris-associated peptides to MHC Class II DR and DQ alleles. Immunome Res. 2: 1.
http://dx.doi.org/10.1186/1745-7580-2-1
PMid:16426456 PMCid:1395305
Wang L, Meng Z, Liu X, Zhang Y, et al. (2011). genetic diversity and differentiation of the orange-spotted grouper (Epinephelus coioides) between and within cultured stocks and wild populations inferred from microsatellite DNA Analysis. Int. J. Mol. Sci. 12: 4378-4394.
http://dx.doi.org/10.3390/ijms12074378
PMid:21845084 PMCid:3155357
Westerdahl H, Wittzell H, von Schantz T and Bensch S (2004). MHC class I typing in a songbird with numerous loci and high polymorphism using motif-specific PCR and DGGE. Heredity 92: 534-542.
http://dx.doi.org/10.1038/sj.hdy.6800450
PMid:15162116
Xu TJ, Sun YN and Chen SL (2010). Allelic variation, balancing selection and positive selected sites detected from MHC class Ia gene of olive flounder. Genetica 138: 1251-1259.
http://dx.doi.org/10.1007/s10709-010-9524-2
PMid:21110065
Yang Z (1997). PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13: 555-556.
PMid:9367129
Yang Z, Wong WS and Nielsen R (2005). Bayes empirical bayes inference of amino acid sites under positive selection. Mol. Biol. Evol. 22: 1107-1118.
http://dx.doi.org/10.1093/molbev/msi097
PMid:15689528