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2011
T. J. Xu, Sun, Y. N., and Wang, R. X., Allelic polymorphism, gene duplication and balancing selection of the MHC class II DAB gene of Cynoglossus semilaevis (Cynoglossidae), vol. 10, pp. 53-64, 2011.
Aguilar A and Garza JC (2007). Patterns of historical balancing selection on the salmonid major histocompatibility complex class II beta gene. J. Mol. Evol. 65: 34-43. http://dx.doi.org/10.1007/s00239-006-0222-8 PMid:17593422   Apanius V, Penn D, Slev PR, Ruff LR, et al. (1997). The nature of selection on the major histocompatibility complex. Crit. Rev. Immunol. 17: 179-224. http://dx.doi.org/10.1615/CritRevImmunol.v17.i2.40 PMid:9094452   Archie EA, Henry T, Maldonado JE, Moss CJ, et al. (2010). Major histocompatibility complex variation and evolution at a single, expressed DQA locus in two genera of elephants. Immunogenetics 62: 85-100. http://dx.doi.org/10.1007/s00251-009-0413-8 PMid:20058003   Axtner J and Sommer S (2007). Gene duplication, allelic diversity, selection processes and adaptive value of MHC class II DRB genes of the bank vole, Clethrionomys glareolus. Immunogenetics 59: 417-426. http://dx.doi.org/10.1007/s00251-007-0205-y PMid:17351770   Baker CS, Vant MD, Dalebout ML, Lento GM, et al. (2006). Diversity and duplication of DQB and DRB-like genes of the MHC in baleen whales (suborder: Mysticeti). Immunogenetics 58: 283-296. http://dx.doi.org/10.1007/s00251-006-0080-y PMid:16568262   Brown JH, Jardetzky TS, Gorga JC, Stern LJ, et al. (1993). Three-dimensional structure of the human class II histocompatibility antigen HLA-DR1. Nature 364: 33-39. http://dx.doi.org/10.1038/364033a0 PMid:8316295   Bryja J, Galan M, Charbonnel N and Cosson JF (2006). Duplication, balancing selection and trans-species evolution explain the high levels of polymorphism of the DQA MHC class II gene in voles (Arvicolinae). Immunogenetics 58: 191-202. http://dx.doi.org/10.1007/s00251-006-0085-6 PMid:16467985   Davies CJ, Andersson L, Ellis SA and Hensen EJ (1997). Nomenclature for factors of the BoLA system, report of the ISAG BoLA Nomenclature Committee. Anim. Genet. 28: 159-168. http://dx.doi.org/10.1111/j.1365-2052.1997.00106.x   Eimes JA, Bollmer JL, Dunn PO, Whittingham LA, et al. (2010). Mhc class II diversity and balancing selection in greater prairie-chickens. Genetica 138: 265-271. http://dx.doi.org/10.1007/s10709-009-9417-4 PMid:19851875   Ekblom R, Saether SA, Fiske P, Kalas JA, et al. (2010). Balancing selection, sexual selection and geographic structure in MHC genes of Great Snipe. Genetica 138: 453-461. http://dx.doi.org/10.1007/s10709-008-9335-x PMid:19052880   Flores-Ramirez S, Urban-Ramirez J and Miller RD (2000). Major histocompatibility complex class I loci from the gray whale (Eschrichtius robustus). J. Hered. 91: 279-282. http://dx.doi.org/10.1093/jhered/91.4.279 PMid:10912673   Goldman N and Yang Z (1994). A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol. Biol. Evol. 11: 725-736. PMid:7968486   Goüy de BJ and Leirs H (2010). Polymorphism and signatures of selection in the multimammate rat DQB gene. Immunogenetics 62: 59-64. http://dx.doi.org/10.1007/s00251-009-0411-x PMid:19953242   Graser R, O'huigin C, Vincek V, Meyer A, et al. (1996). Trans-species polymorphism of class II Mhc loci in danio fishes. Immunogenetics 44: 36-48. http://dx.doi.org/10.1007/BF02602655 PMid:8613141   Grimholt U, Larsen S, Nordmo R, Midtlyng P, et al. (2003). MHC polymorphism and disease resistance in Atlantic salmon (Salmo salar); facing pathogens with single expressed major histocompatibility class I and class II loci. Immunogenetics 55: 210-219. http://dx.doi.org/10.1007/s00251-003-0567-8 PMid:12811427   Harf R and Sommer S (2005). Association between major histocompatibility complex class II DRB alleles and parasite load in the hairy-footed gerbil, Gerbillurus paeba, in the southern Kalahari. Mol. Ecol. 14: 85-91. http://dx.doi.org/10.1111/j.1365-294X.2004.02402.x PMid:15643953   Hedrick PW (1998). Balancing selection and MHC. Genetica 104: 207-214. http://dx.doi.org/10.1023/A:1026494212540 PMid:10386384   Hedrick PW (2002). Pathogen resistance and genetic variation at MHC loci. Evolution 56: 1902-1908. PMid:12449477   Hughes AL (1994). The evolution of functionally novel proteins after gene duplication. Proc. Biol. Sci. 256: 119-124. http://dx.doi.org/10.1098/rspb.1994.0058 PMid:8029240   Hughes AL (1999). Adaptive Evolution of Genes and Genomes. Oxford University Press, New York.   Hughes AL and Nei M (1988). Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection. Nature 335: 167-170. http://dx.doi.org/10.1038/335167a0 PMid:3412472   Hughes AL and Nei M (1989). Nucleotide substitution at major histocompatibility complex class II loci: evidence for overdominant selection. Proc. Natl. Acad. Sci. U. S. A. 86: 958-962. http://dx.doi.org/10.1073/pnas.86.3.958 PMid:2492668 PMCid:286598   Hughes AL and Nei M (1990). Evolutionary relationships of class II major-histocompatibility-complex genes in mammals. Mol. Biol. Evol. 7: 491-514. PMid:2126590   Hughes AL and Yeager M (1998a). Natural selection at major histocompatibility complex loci of vertebrates. Annu. Rev. Genet. 32: 415-435. http://dx.doi.org/10.1146/annurev.genet.32.1.415 PMid:9928486   Hughes AL and Yeager M (1998b). Natural selection at major histocompatibility complex loci of vertebrates. Annu. Rev. Genet. 32: 415-435. http://dx.doi.org/10.1146/annurev.genet.32.1.415 PMid:9928486   Karaiskou N, Moran P, Georgitsakis G and Abatzopoulos TJ (2010). High allelic variation of MHC class II alpha antigen and the role of selection in wild and cultured Sparus aurata populations. Hydrobiologia 638: 11-20. http://dx.doi.org/10.1007/s10750-009-0001-9   Meyer-Lucht Y and Sommer S (2005). MHC diversity and the association to nematode parasitism in the yellow-necked mouse (Apodemus flavicollis). Mol. Ecol. 14: 2233-2243. http://dx.doi.org/10.1111/j.1365-294X.2005.02557.x PMid:15910340   Nei M and Gojobori T (1986). Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3: 418-426. PMid:3444411   Nei M and Rooney AP (2005). Concerted and birth-and-death evolution of multigene families. Annu. Rev. Genet. 39: 121-152. http://dx.doi.org/10.1146/annurev.genet.39.073003.112240 PMid:16285855 PMCid:1464479   Nei M, Gu X and Sitnikova T (1997). Evolution by the birth-and-death process in multigene families of the vertebrate immune system. Proc. Natl. Acad. Sci. U. S. A. 94: 7799-7806. http://dx.doi.org/10.1073/pnas.94.15.7799 PMid:9223266 PMCid:33709   Oliver MK and Piertney SB (2006). Isolation and characterization of a MHC class II DRB locus in the European water vole (Arvicola terrestris). Immunogenetics 58: 390-395. http://dx.doi.org/10.1007/s00251-006-0121-6 PMid:16738936   Parham P and Ohta T (1996). Population biology of antigen presentation by MHC class I molecules. Science 272: 67-74. http://dx.doi.org/10.1126/science.272.5258.67 PMid:8600539   Stear MJ, Innocent GT and Buitkamp J (2005). The evolution and maintenance of polymorphism in the major histocompatibility complex. Vet. Immunol. Immunopathol. 108: 53-57. http://dx.doi.org/10.1016/j.vetimm.2005.07.005 PMid:16099055   Stet RJM, Vries B, Mudde K, Hermsem T, et al. (2002). Unique haplotypes of co-segregating major histocompatibility complex class II A and class II B alleles in Atlantic salmon Salmo salar give rise to diverse class II genotypes. Immunogenetics 54: 320-331. http://dx.doi.org/10.1007/s00251-002-0477-1 PMid:12185536   Xu SX, Ren WH, Li SZ, Wei FW, et al. (2009). Sequence polymorphism and evolution of three cetacean MHC genes. J. Mol. Evol. 69: 260-275. http://dx.doi.org/10.1007/s00239-009-9272-z PMid:19693422   Xu TJ, Chen SL, Ji XS and Tian YS (2008). MHC polymorphism and disease resistance to Vibrio anguillarum in 12 selective Japanese flounder (Paralichthys olivaceus) families. Fish Shellfish Immunol. 25: 213-221. http://dx.doi.org/10.1016/j.fsi.2008.05.007 PMid:18603444   Xu TJ, Chen SL, Ji XS and Sha ZX (2009). Molecular cloning, genomic structure, polymorphism and expression analysis of major histocompatibility complex class IIA and IIB genes of half-smooth tongue sole (Cynoglossus semilaevis). Fish Shellfish Immunol. 27: 192-201. http://dx.doi.org/10.1016/j.fsi.2009.04.009 PMid:19442741   Xu TJ, Sha ZX and Chen SL (2010). Unexpected variations of beta2-microglobulin gene in the half-smooth tongue sole. Fish Shellfish Immunol. 28: 212-215. http://dx.doi.org/10.1016/j.fsi.2009.09.015 PMid:19825419   Yang Z, Wong WS and Nielsen R (2005). Bayes empirical Bayes inference of amino acid sites under positive selection. Mol. Biol. Evol. 22: 1107-1118. http://dx.doi.org/10.1093/molbev/msi097 PMid:15689528
2010
R. X. Wang, Xu, T. J., Sun, Y. N., and He, G. Y., Polymorphic microsatellite loci from two enriched genomic libraries for the genetic analysis of the miiuy croaker, Miichthys miiuy (Sciaenidae), vol. 9. pp. 931-934, 2010.
Liu YG, Liu CY, Li FZ, Li ZX, et al. (2009). Development of microsatellite markers in sea perch, Lateolabrax japonicus, from codominant amplified fragment length polymorphism bands. J. World Aquacult. Soc. 40: 522-530. http://dx.doi.org/10.1111/j.1749-7345.2009.00277.x   Rice WE (1989). Analyzing tables of statistical tests. Evolution 43: 223-225. http://dx.doi.org/10.2307/2409177   Schneider S, Roessli D and Excoffier L (2000). ARLEQUIN: a software for population genetics data analysis, version 2.000. University of Geneva, Geneva.   Shan XJ, Cao L, Huang W and Dou SZ (2008a). Feeding, morphological changes and allometric growth during starvation in miiuy croaker larvae. Environ. Biol. Fishes 86: 121-130. http://dx.doi.org/10.1007/s10641-008-9412-0   Shan XJ, Xiao ZZ, Huang W and Dou SZ (2008b). Effects of photoperiod on growth, mortality and digestive enzymes in miiuy croaker larvae and juveniles. Aquaculture 281: 70-76. http://dx.doi.org/10.1016/j.aquaculture.2008.05.034   Shan XJ, Huang W, Cao L, Xiao ZZ, et al. (2009). Ontogenetic development of digestive enzymes and effect of starvation in miiuy croaker Miichthys miiuy larvae. Fish Physiol. Biochem. 35: 385-398. http://dx.doi.org/10.1007/s10695-008-9263-9 PMid:18821026   Van Oosterhout C, Hutchinson WF, Wills DPM and Shipley P (2004). MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4: 538. http://dx.doi.org/10.1111/j.1471-8286.2004.00684.x   Xu TJ, Liao XL, Shao CW, Ji XS, et al. (2009). Isolation and characterization of polymorphic microsatellite DNA markers in the rock bream (Oplegnathus fasciatus). Conserv. Genet. 10: 527-529. http://dx.doi.org/10.1007/s10592-008-9557-6   Yeh FC and Boyle TJB (1997). Population genetic analysis of co-dominant and dominant markers and quantitative traits. Belg. J. Bot. 129-157.   Zane L, Bargelloni L and Patarnello T (2002). Strategies for microsatellite isolation: a review. Mol. Ecol. 11: 1-16. http://dx.doi.org/10.1046/j.0962-1083.2001.01418.x PMid:11903900   Zhang QY and Hong WS (2000). Status and prospects of artificial propagation and breeding technique of marine fish in China in the 1990s (in Chinese). Mod. Fish. Info. 15:3-6.