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P. Xuan, Guo, M. Z., Wang, J., Wang, C. Y., Liu, X. Y., and Liu, Y., Genetic algorithm-based efficient feature selection for classification of pre-miRNAs, vol. 10, pp. 588-603, 2011.
Bartel DP (2004). MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297. doi:10.1016/S0092-8674(04)00045-5 Batuwita R and Palade V (2009). microPred: effective classification of pre-miRNAs for human miRNA gene prediction. Bioinformatics 25: 989-995. doi:10.1093/bioinformatics/btp107 PMid:19233894 Berezikov E, Guryev V, van de Belt J, Wienholds E, et al. (2005). Phylogenetic shadowing and computational identification of human microRNA genes. Cell 120: 21-24. doi:10.1016/j.cell.2004.12.031 PMid:15652478 Bushati N and Cohen SM (2007). microRNA functions. Annu. Rev. Cell Dev. Biol. 23: 175-205. doi:10.1146/annurev.cellbio.23.090506.123406 PMid:17506695 Chang DT, Wang CC and Chen JW (2008). Using a kernel density estimation based classifier to predict species-specific microRNA precursors. BMC Bioinformatics 9 (Suppl 12): S2. doi:10.1186/1471-2105-9-S12-S2 PMid:19091019    PMCid:2638167 Chatterjee S and Grosshans H (2009). Active turnover modulates mature microRNA activity in Caenorhabditis elegans. Nature 461: 546-549. doi:10.1038/nature08349 PMid:19734881 Fera D, Kim N, Shiffeldrim N, Zorn J, et al. (2004). RAG: RNA-As-Graphs web resource. BMC Bioinformatics 5: 88. doi:10.1186/1471-2105-5-88 PMid:15238163    PMCid:471545 Freyhult E, Gardner PP and Moulton V (2005). A comparison of RNA folding measures. BMC Bioinformatics 6: 241. doi:10.1186/1471-2105-6-241 PMid:16202126    PMCid:1274297 Gan HH, Fera D, Zorn J, Shiffeldrim N, et al. (2004). RAG: RNA-As-Graphs database - concepts, analysis, and features. Bioinformatics 20: 1285-1291. doi:10.1093/bioinformatics/bth084 PMid:14962931 Griffiths-Jones S, Saini HK, van Dongen S and Enright AJ (2008). miRBase: tools for microRNA genomics. Nucleic Acids Res. 36: D154-D158. doi:10.1093/nar/gkm952 PMid:17991681    PMCid:2238936 Hofacker IL, Fontana W, Stadler PF, Bonhoeffer LS, et al. (1994). Fast folding and comparison of RNA secondary structures. Monatshefte fur Chemie/Chemical Monthly 125: 167-188. Jiang P, Wu H, Wang W, Ma W, et al. (2007). MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features. Nucleic Acids Res. 35: W339-W344. doi:10.1093/nar/gkm368 PMid:17553836    PMCid:1933124 Moulton V, Zuker M, Steel M, Pointon R, et al. (2000). Metrics on RNA secondary structures. J. Comput. Biol. 7: 277-292. doi:10.1089/10665270050081522 PMid:10890402 Nam JW, Shin KR, Han J, Lee Y, et al. (2005). Human microRNA prediction through a probabilistic co-learning model of sequence and structure. Nucleic Acids Res. 33: 3570-3581. doi:10.1093/nar/gki668 PMid:15987789    PMCid:1159118 Ng KL and Mishra SK (2007). De novo SVM classification of precursor microRNAs from genomic pseudo hairpins using global and intrinsic folding measures. Bioinformatics 23: 1321-1330. doi:10.1093/bioinformatics/btm026 PMid:17267435 Quinlan JR (1993). C4.5: Programs for Machine Learning. Morgan Kaufmann Publishers, San Mateo. Schultes EA, Hraber PT and LaBean TH (1999). Estimating the contributions of selection and self-organization in RNA secondary structure. J. Mol. Evol. 49: 76-83. doi:10.1007/PL00006536 PMid:10368436 Seffens W and Digby D (1999). mRNAs have greater negative folding free energies than shuffled or codon choice randomized sequences. Nucleic Acids Res. 27: 1578-1584. doi:10.1093/nar/27.7.1578 PMid:10075987    PMCid:148359 Sewer A, Paul N, Landgraf P, Aravin A, et al. (2005). Identification of clustered microRNAs using an ab initio prediction method. BMC Bioinformatics 6: 267. doi:10.1186/1471-2105-6-267 PMid:16274478    PMCid:1315341 Xue C, Li F, He T, Liu GP, et al. (2005). Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine. BMC Bioinformatics 6: 310. doi:10.1186/1471-2105-6-310 PMid:16381612    PMCid:1360673 Yousef M, Nebozhyn M, Shatkay H, Kanterakis S, et al. (2006). Combining multi-species genomic data for microRNA identification using a naive Bayes classifier. Bioinformatics 22: 1325-1334. doi:10.1093/bioinformatics/btl094 PMid:16543277 Yousef M, Jung S, Showe LC and Showe MK (2008). Learning from positive examples when the negative class is undetermined - microRNA gene identification. Algorithms Mol. Biol. 3: 2. doi:10.1186/1748-7188-3-2 PMid:18226233    PMCid:2248178 Zhang BH, Pan XP, Cox SB, Cobb GP, et al. (2006). Evidence that miRNAs are different from other RNAs. Cell Mol. Life Sci. 63: 246-254. doi:10.1007/s00018-005-5467-7 PMid:16395542