Publications

Found 1 results
Filters: Author is Z.F. Huang  [Clear All Filters]
2011
Y. Jiang, Nie, L. W., Huang, Z. F., Jing, W. X., Wang, L., Liu, L., and Dai, X. T., Comparison of complete mitochondrial DNA control regions among five Asian freshwater turtle species and their phylogenetic relationships, vol. 10, pp. 1545-1557, 2011.
Aquadro CF and Greenberg BD (1983). Human mitochondrial DNA variation and evolution: analysis of nucleotide sequences from seven individuals. Genetics 103: 287-312. PMid:6299878    PMCid:1219980 Avise JC, Bowen BW, Lamb T, Meylan AB, et al. (1992). Mitochondrial DNA evolution at a turtle’s pace: evidence for low genetic variability and reduced microevolutionary rate in the Testudines. Mol. Biol. Evol. 9: 457-473. PMid:1584014 Barth D, Bernhard D, Fritzsch G and Fritz U (2004). The freshwater turtle genus Mauremys (Testudines, Geoemydidae) - a textbook example of an east-west disjunction or a taxonomic misconcept? Zoolog. Scripta 33: 213-221. doi:10.1111/j.0300-3256.2004.00150.x Cann RL, Brown WM and Wilson AC (1984). Polymorphic sites and the mechanism of evolution in human mitochondrial DNA. Genetics 106: 479-499. PMid:6323246    PMCid:1224251 Crochet PA and Desmarais E (2000). Slow rate of evolution in the mitochondrial control region of gulls (Aves: Laridae). Mol. Biol. Evol. 17: 1797-1806. PMid:11110895 Desalle R, Freedman T, Prager EM and Wilson AC (1987). Tempo and mode of sequence evolution in mitochondrial DNA of Hawaiian Drosophila. J. Mol. Evol. 26: 157-164. doi:10.1007/BF02111289 PMid:3125333 Doda JN, Wright CT and Clayton DA (1981). Elongation of displacement-loop strands in human and mouse mitochondrial DNA is arrested near specific template sequences. Proc. Natl. Acad. Sci. U. S. A. 78: 6116-6120. doi:10.1073/pnas.78.10.6116 Feldman CR and Parham JF (2004). Molecular systematics of old world stripe-necked turtles (Testudines: Mauremys). Asiat. Herpetol. Res. 10: 28-37. Fong JJ, Parham JF, Shi H and Stuart BL (2007). A genetic survey of heavily exploited, endangered turtles: caveats on the conservation value of trade animals. Anim. Conserv. 10: 452-460. doi:10.1111/j.1469-1795.2007.00131.x Fumagalli L, Taberlet P, Favre L and Hausser J (1996). Origin and evolution of homologous repeated sequences in the mitochondrial DNA control region of shrews. Mol. Biol. Evol. 13: 31-46. PMid:8583904 Hirayama R, Kaneko N and Okazaki H (2007). Ocadia nipponica, a new species of aquatic turtle (Testudines: Testudinoidea: Geoemydidae) from the Middle Pleistocene of Chiba Prefecture, central Japan. Paleontol. Res. 11: 1-19. doi:10.2517/1342-8144(2007)11[1:ONANSO]2.0.CO;2 Hoelzel AR, Hancock JM and Dover GA (1993). Generation of VNTRs and heteroplasmy by sequence turnover in the mitochondrial control region of two elephant seal species. J. Mol. Evol. 37: 190-197. doi:10.1007/BF02407355 PMid:8411208 Honda M, Yasukawa Y and Ota H (2002). Phylogeny of Eurasian freshwater turtles of the genus Mauremys Gray 1869 (Testudines), with special reference to a close affinity of Mauremys japonica with Chinemys reevesii. J. Zool. Systemat. Evol. Res. 40: 195-200. doi:10.1046/j.1439-0469.2002.00176.x Lamb T, Lydeard C, Walker RB and Gibbons JW (1994). Molecular systematics of map turtles (Graptemys): a comparison of mitochondrial restriction site versus sequence data. Syst. Biol. 43: 543-559. doi:10.1093/sysbio/43.4.543 Li XS, Nie LW, Wang L, Xiong L, et al. (2010). The mitochondrial genome complete sequence and organization of the pig-nosed turtle Carettochelys insculpta (Testudines, Carettochelyidae) and its phylogeny position in Testudines. Amphibia-Reptilia 31: 541-551. doi:10.1163/017353710X530203 Peng QL, Nie LW and Pu YG (2006). Complete mitochondrial genome of Chinese big-headed turtle, Platysternon megacephalum, with a novel gene organization in vertebrate mtDNA. Gene 380: 14-20. doi:10.1016/j.gene.2006.04.001 PMid:16842936 Posada D and Crandall KA (1998). MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818. doi:10.1093/bioinformatics/14.9.817 PMid:9918953 Rand DM (1994). Concerted evolution and RAPping in mitochondrial VNTRs and the molecular geography of cricket populations. EXS 69: 227-245. PMid:7994109 Rand DM and Harrison RG (1989). Molecular population genetics of mtDNA size variation in crickets. Genetics 121: 551-569. PMid:2565855    PMCid:1203640 Randi E and Lucchini V (1998). Organization and evolution of the mitochondrial DNA control region in the avian genus Alectoris. J. Mol. Evol. 47: 449-462. doi:10.1007/PL00006402 PMid:9767690 Rhodin AGJ, van Dijk PP and Parham JF (2008). Turtles of the World: Annotated Checklist of Taxonomy and Synonymy. Chelonian Research Foundation, Lunenburg. Ronquist F and Huelsenbeck JP (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574. doi:10.1093/bioinformatics/btg180 PMid:12912839 Ruokonen M and Kvist L (2002). Structure and evolution of the avian mitochondrial control region. Mol. Phylogenet. Evol. 23: 422-432. doi:10.1016/S1055-7903(02)00021-0 Spinks PQ, Bradley SH, Iverson JB and McCord WP (2004). Phylogenetic hypotheses for the turtle family Geoemydidae. Mol. Phylogenet. Evol. 32: 164-182. doi:10.1016/j.ympev.2003.12.015 PMid:15186805 Stuart BL and Parham JF (2007). Recent hybrid origin of three rare Chinese turtles. Conserv. Genet. 8: 169-175. doi:10.1007/s10592-006-9159-0 Su Y (2005). Conserved and heteroplasmy on mitochondrial DNA control region in animal. Sichuan J. Zoo. 24: 669-672. Swofford DL (2002). PAUP*: Phylogenenc Analysis using Parsimony (*and Other Methods), Version 4.0b l0. Sinauer Associates, Sunderland. Tamura K and Nei M (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10: 512-526. PMid:8336541 Tamura K, Dudley J, Nei M and Kumar S (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24: 1596-1599. doi:10.1093/molbev/msm092 PMid:17488738 Vigilant L, Stoneking M, Harpending H, Hawkes K, et al. (1991). African populations and the evolution of human mitochondrial DNA. Science 253: 1503-1507. doi:10.1126/science.1840702 PMid:1840702 Xia X and Lemey P (2009). Assessing Substitution Saturation with DAMBE. 2nd edn. In: The Phylogenetic Handbook: A Practical Approach to DNA and Protein Phylogeny (Lemey P, Salemi M and Vandamme A-M, eds.). Cambridge University Press, Cambridge, 615-630. Xiao B, Ma F, Sun Y and Li QW (2006). Comparative analysis of complete mitochondrial DNA control region of four species of Strigiformes. Yi. Chuan Xue. Bao. 33: 965-974. PMid:17112967 Yan L, Zhang Y, Wang N and Zhang L (2008). Comparison of mitochondrial control region sequences between Chelydridae and Platysternidae. Zool. Res. 29: 127-133. doi:10.3724/SP.J.1141.2008.00127 Zardoya R and Meyer A (1998). Cloning and characterization of a microsatellite in the mitochondrial control region of the African side-necked turtle, Pelomedusa subrufa. Gene 216: 149-153. doi:10.1016/S0378-1119(98)00332-1 Zhang L, Nie L, Cao C and Zhan Y (2008). The complete mitochondrial genome of the Keeled box turtle Pyxidea mouhotii and phylogenetic analysis of major turtle groups. J. Genet. Genom. 35: 33-40. doi:10.1016/S1673-8527(08)60005-3 Zhang YY, Nie LW, Huang YQ and Pu YG (2009). The mitochondrial DNA control region comparison studies of four hinged turtles and its phylogentic significance of the genus Cuora sensu lato (Testudinata: Geoemydidae). Genes Genom. 31: 349-359. doi:10.1007/BF03191253 Zhao EM and Zhou T (2004). Atlas for Identification of Turtles and Tortoises. China Agriculture Press, Beijing. Zhu SH, Zheng WJ, Zou JX and Yang YC (2007). Mitochondrial DNA control region structure and molecular phylogenetic relationship of Carangidae. Zool. Res. 28: 606-614. Zink RM and Blackwell RC (1998). Molecular systematics and biogeography of aridland gnatcatchers (genus Polioptila) and evidence supporting species status of the California gnatcatcher (Polioptila california). Mol. Phylogenet. Evol. 9: 26-32. doi:10.1006/mpev.1997.0444 PMid:9479690