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2012
M. C. Chien, Huang, W. T., Wang, P. W., Liou, C. W., Lin, T. K., Hsieh, C. J., and Weng, S. W., Role of mitochondrial DNA variants and copy number in diabetic atherogenesis, vol. 11, pp. 3339-3348, 2012.
Allen JF and Raven JA (1996). Free-radical-induced mutation vs redox regulation: costs and benefits of genes in organelles. J. Mol. Evol. 42: 482-492. http://dx.doi.org/10.1007/BF02352278 PMid:8662000   Anderson S, Bankier AT, Barrell BG, de Bruijn MH, et al. (1981). Sequence and organization of the human mitochondrial genome. Nature 290: 457-465. http://dx.doi.org/10.1038/290457a0 PMid:7219534   Brownlee M (2001). Biochemistry and molecular cell biology of diabetic complications. Nature 414: 813-820. http://dx.doi.org/10.1038/414813a PMid:11742414   Chappey O, Dosquet C, Wautier MP and Wautier JL (1997). Advanced glycation end products, oxidant stress and vascular lesions. Eur. J. Clin. Invest. 27: 97-108. http://dx.doi.org/10.1046/j.1365-2362.1997.710624.x PMid:9061302   Croteau DL and Bohr VA (1997). Repair of oxidative damage to nuclear and mitochondrial DNA in mammalian cells. J. Biol. Chem. 272: 25409-25412. http://dx.doi.org/10.1074/jbc.272.41.25409 PMid:9325246   Du X, Matsumura T, Edelstein D, Rossetti L, et al. (2003). Inhibition of GAPDH activity by poly(ADP-ribose) polymerase activates three major pathways of hyperglycemic damage in endothelial cells. J. Clin. Invest. 112: 1049-1057. PMid:14523042 PMCid:198524   Gutierrez J, Ballinger SW, Darley-Usmar VM and Landar A (2006). Free radicals, mitochondria, and oxidized lipids: the emerging role in signal transduction in vascular cells. Circ. Res. 99: 924-932. http://dx.doi.org/10.1161/01.RES.0000248212.86638.e9 PMid:17068300   Lee HC, Yin PH, Lu CY, Chi CW, et al. (2000). Increase of mitochondria and mitochondrial DNA in response to oxidative stress in human cells. Biochem. J. 348: 425-432. http://dx.doi.org/10.1042/0264-6021:3480425 PMid:10816438 PMCid:1221082   Lee HC, Yin PH, Chi CW and Wei YH (2002). Increase in mitochondrial mass in human fibroblasts under oxidative stress and during replicative cell senescence. J. Biomed. Sci. 9: 517-526. http://dx.doi.org/10.1007/BF02254978 PMid:12372989   Lu J, Li Z, Zhu Y, Yang A, et al. (2010). Mitochondrial 12S rRNA variants in 1642 Han Chinese pediatric subjects with aminoglycoside-induced and nonsyndromic hearing loss. Mitochondrion 10: 380-390. http://dx.doi.org/10.1016/j.mito.2010.01.007 PMid:20100600 PMCid:2874659   Madamanchi NR and Runge MS (2007). Mitochondrial dysfunction in atherosclerosis. Circ. Res. 100: 460-473. http://dx.doi.org/10.1161/01.RES.0000258450.44413.96 PMid:17332437   Mercer JR, Cheng KK, Figg N, Gorenne I, et al. (2010). DNA damage links mitochondrial dysfunction to atherosclerosis and the metabolic syndrome. Circ. Res. 107: 1021-1031. http://dx.doi.org/10.1161/CIRCRESAHA.110.218966 PMid:20705925 PMCid:2982998   Morino K, Petersen KF, Dufour S, Befroy D, et al. (2005). Reduced mitochondrial density and increased IRS-1 serine phosphorylation in muscle of insulin-resistant offspring of type 2 diabetic parents. J. Clin. Invest. 115: 3587-3593. http://dx.doi.org/10.1172/JCI25151 PMid:16284649 PMCid:1280967   Nishikawa T, Edelstein D, Du XL, Yamagishi S, et al. (2000). Normalizing mitochondrial superoxide production blocks three pathways of hyperglycaemic damage. Nature 404: 787-790. http://dx.doi.org/10.1038/35008121 PMid:10783895   Petersen KF, Dufour S, Befroy D, Garcia R, et al. (2004). Impaired mitochondrial activity in the insulin-resistant offspring of patients with type 2 diabetes. N. Engl. J. Med. 350: 664-671. http://dx.doi.org/10.1056/NEJMoa031314 PMid:14960743 PMCid:2995502   Puddu P, Puddu GM, Galletti L, Cravero E, et al. (2005). Mitochondrial dysfunction as an initiating event in atherogenesis: a plausible hypothesis. Cardiology 103: 137-141. http://dx.doi.org/10.1159/000083440 PMid:15665536   Rosen P, Nawroth PP, King G, Moller W, et al. (2001). The role of oxidative stress in the onset and progression of diabetes and its complications: a summary of a Congress Series sponsored by UNESCO-MCBN, the American Diabetes Association and the German Diabetes Society. Diabetes Metab. Res. Rev. 17: 189-212. http://dx.doi.org/10.1002/dmrr.196 PMid:11424232   Ross R (1993). The pathogenesis of atherosclerosis: a perspective for the 1990s. Nature 362: 801-809. http://dx.doi.org/10.1038/362801a0 PMid:8479518   Sawano T, Tanaka M, Ohno K, Yoneda M, et al. (1996). Mitochondrial DNA mutations associated with the 11778 mutation in Leber's disease. Biochem. Mol. Biol. Int. 38: 693-700. PMid:8728098   Seneca S, Lissens W, Liebaers I, van den Bergh P, et al. (1998). Pitfalls in the diagnosis of mtDNA mutations. J. Med. Genet. 35: 963-964. http://dx.doi.org/10.1136/jmg.35.11.963 PMid:9832049 PMCid:1051498   Shtilbans A, El-Schahawi M, Malkin E, Shanske S, et al. (1999). A novel mutation in the mitochondrial DNA transfer ribonucleic acidAsp gene in a child with myoclonic epilepsy and psychomotor regression. J. Child Neurol. 14: 610-613. http://dx.doi.org/10.1177/088307389901400910 PMid:10488907   Tanaka N, Goto Y, Akanuma J, Kato M, et al. (2010). Mitochondrial DNA variants in a Japanese population of patients with Alzheimer's disease. Mitochondrion 10: 32-37. http://dx.doi.org/10.1016/j.mito.2009.08.008 PMid:19703591   Tuppen HA, Fattori F, Carrozzo R, Zeviani M, et al. (2008). Further pitfalls in the diagnosis of mtDNA mutations: homoplasmic mt-tRNA mutations. J. Med. Genet. 45: 55-61. http://dx.doi.org/10.1136/jmg.2007.051185 PMid:18178636   Wong LJ (2007). Pathogenic mitochondrial DNA mutations in protein-coding genes. Muscle Nerve 36: 279-293. http://dx.doi.org/10.1002/mus.20807 PMid:17503499
J. Ma, Guan, S. C., Zhang, Z., and Wang, P. W., Single- and double-SSR primer combined analyses in rice, vol. 11, pp. 1032-1038, 2012.
Brown-Guedira GL, Thompson JA, Nelson RL and Warburton ML (2000). Evaluation of genetic diversity of soybean introductions and North American ancestors using RAPD and SSR markers. Crop Sci. 40: 815-823. http://dx.doi.org/10.2135/cropsci2000.403815x La Rosa R, Angiolillo A, Guerrero C, Pellegrini M, et al. (2003). A first linkage map of olive (Olea europaea L.) cultivars using RAPD, AFLP, RFLP and SSR markers. Theor. Appl. Genet. 106: 1273-1282. PMid:12748779 Liu Y, Li Y, Zhou G and Uzokwe N (2010). Development of soybean EST-SSR markers and their use to assess genetic diversity in the subgenus Soja. Agr. Sci. China 9: 1423-1429. http://dx.doi.org/10.1016/S1671-2927(09)60233-9 Ma J, Wang PW, Yao D, Wang YP, et al. (2011). Single-primer PCR correction: a strategy for false-positive exclusion. Genet. Mol. Res. 10: 150-159. http://dx.doi.org/10.4238/vol10-1gmr988 PMid:21308656 Sayama T, Nakazaki T, Ishikawa G and Hanada T (2009). QTL analysis of seed-flooding tolerance in soybean (Glycine max [L.] Merr.). Plant Sci. 176: 514-521. http://dx.doi.org/10.1016/j.plantsci.2009.01.007 Wei X, Yang Z, Dong L, Yu H, et al. (2004). SSR evidence for taxonomic position of Weedy Rice‘Ludao’. Sci. Agric. Sin. 37: 937-942. Welsh J and McClelland M (1990). Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 18: 7213-7218. http://dx.doi.org/10.1093/nar/18.24.7213 PMid:2259619    PMCid:332855 Wen ZX, Zhao TJ, Zhen YZ and Liu SH (2008). Association analysis of agronomic and quality traits with SSR markers in Glycine max and Glycine soja in China: I. Population structure and associated markers. Acta Agron. Sin. 34: 1169-1178. http://dx.doi.org/10.3724/SP.J.1006.2008.01169 Williams JG, Kubelik AR, Livak KJ, Rafalski JA, et al. (1990). DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18: 6531-6535. http://dx.doi.org/10.1093/nar/18.22.6531 PMid:1979162    PMCid:332606
2011
J. Ma, Guan, S. C., Yao, D., Wei, Y. F., and Wang, P. W., Problems with and a system to eliminate single-primer PCR product contamination in simple sequence repeat molecular marker-assisted selection in soybean, vol. 10, pp. 1659-1668, 2011.
Amar MH, Biswas MK, Zhang Z and Guo WW (2011). Exploitation of SSR, SRAP and CAPS-SNP markers for genetic diversity of Citrus germplasm collection. Sci. Hortic. 128: 220-227. http://dx.doi.org/10.1016/j.scienta.2011.01.021 Du W, Yu DY and Fu SX (2009a). Analysis of QTLs for the trichome density on the upper and downer surface of leaf blade in soybean [Glycine max (L.) Merr.]. Agric. Sci. China 8: 529-537. http://dx.doi.org/10.1016/S1671-2927(08)60243-6 Du W, Wang M, Fu S and Yu D (2009b). Mapping QTLs for seed yield and drought susceptibility index in soybean (Glycine max L.) across different environments. J. Genet. Genomics 36: 721-731. http://dx.doi.org/10.1016/S1673-8527(08)60165-4 Ferreira AM, Vitor RW, Carneiro AC, Brandao GP, et al. (2004). Genetic variability of Brazilian Toxoplasma gondii strains detected by random amplified polymorphic DNA-polymerase chain reaction (RAPD-PCR) and simple sequence repeat anchored-PCR (SSR-PCR). Infect. Genet. Evol. 4: 131-142. http://dx.doi.org/10.1016/j.meegid.2004.03.002 PMid:15157631 Liang HZ, Yu YL, Wang SF, Lian Y, et al. (2010). QTL mapping of isoflavone, oil and protein contents in soybean (Glycine max L. Merr.). Agric. Sci. China 9: 1108-1116. http://dx.doi.org/10.1016/S1671-2927(09)60197-8 Liu YL, Li YH, Zhou GA, Uzokwe N, et al. (2010). Development of soybean EST-SSR markers and their use to assess genetic diversity in the subgenus soja. Agric. Sci. China 9: 1423-1429. http://dx.doi.org/10.1016/S1671-2927(09)60233-9 Ma J, Wang PW, Yao D, Wang YP, et al. (2011). Single-primer PCR correction: a strategy for false-positive exclusion. Genet. Mol. Res. 10: 150-159. http://dx.doi.org/10.4238/vol10-1gmr988 PMid:21308656 Ning SP, Xu LB, Lu Y, Huang BZ, et al. (2007). Genome composition and genetic diversity of Musa germplasm from China revealed by PCR-RFLP and SSR markers. Sci. Hortic. 114: 281-288. http://dx.doi.org/10.1016/j.scienta.2007.07.002 Sayama T, Nakazaki T, Ishikawa G, Yagasaki K, et al. (2009). QTL analysis of seed-flooding tolerance in soybean (Glycine max [L.] Merr.). Plant Sci. 176: 514-521. http://dx.doi.org/10.1016/j.plantsci.2009.01.007 Wen ZX, Zhao TJ, Zheng YZ, Liu SH, et al. (2008). Association analysis of agronomic and quality traits with SSR markers in Glycine max and Glycine soja in China: I. population structure and associated markers. Acta Agron. Sin. 34: 1169-1178.
J. Ma, Wang, P. W., Yao, D., Wang, Y. P., Yan, W., and Guan, S. C., Single-primer PCR correction: a strategy for false-positive exclusion, vol. 10, pp. 150-159, 2011.
Bozkurt O, Unver T and Akkaya MS (2007). Genes associated with resistance to wheat yellow rust disease identified by differential display analysis. Physiol. Mol. Plant Pathol. 71: 251-259. http://dx.doi.org/10.1016/j.pmpp.2008.03.002   Colonna-Romano S, Porta A, Franco A, Kobayashi GS, et al. (1998). Identification and isolation by DDRT-PCR of genes differentially expressed by Histoplasma capsulatum during macrophages infection. Microb. Pathog. 25: 55-66. http://dx.doi.org/10.1006/mpat.1998.0209 PMid:9712685   Fabi JP, Lajolo FM and Nascimento JRO (2009). Cloning and characterization of transcripts differentially expressed in the pulp of ripening papaya. Sci. Hortic. 121: 159-165. http://dx.doi.org/10.1016/j.scienta.2009.01.036   Ghannam A, Jacques A, De Ruffray P, Baillieul F, et al. (2005). Identification of tobacco ESTs with a hypersensitive response (HR)-specific pattern of expression and likely involved in the induction of the HR and/or localized acquired resistance (LAR). Plant Physiol. Biochem. 43: 249-259. http://dx.doi.org/10.1016/j.plaphy.2005.02.001 PMid:15854833   Löfström C, Axelsson CE and Rådström P (2008). Validation of a diagnostic PCR method for routine analysis of Salmonella spp. in animal feed samples. Food Anal. Method. 1: 23-27. http://dx.doi.org/10.1007/s12161-007-9003-2   Ma J, Zhang J, Qu J, Wang YP, et al. (2009). Development of novel soybean germplasms with low activity of lipoxygenases by RNAi method. Sci. Agric. Sin. 42: 3804-3811.   Ono K, Satoh M, Yoshida T, Ozawa Y, et al. (2007). Species identification of animal cells by nested PCR targeted to mitochondrial DNA. In Vitro Cell Dev. Biol. Anim. 43: 168-175. http://dx.doi.org/10.1007/s11626-007-9033-5 PMid:17516125   Sahdev S, Saini S, Tiwari P, Saxena S, et al. (2007). Amplification of GC-rich genes by following a combination strategy of primer design, enhancers and modified PCR cycle conditions. Mol. Cell Probes 21: 303-307. http://dx.doi.org/10.1016/j.mcp.2007.03.004 PMid:17490855   Vallette F, Mege E, Reiss A and Adesnik M (1989). Construction of mutant and chimeric genes using the polymerase chain reaction. Nucleic Acids Res. 17: 723-733. http://dx.doi.org/10.1093/nar/17.2.723 PMid:2915928 PMCid:331615   Wen ZX, Zhao TJ, Zhen YZ, Liu SH, et al. (2008). Association analysis of agronomic and quality traits with SSR markers in Glycine max and Glycine soja in China: I. Population structure and associated markers. Acta Agron. Sin. 34: 1169-1178. http://dx.doi.org/10.3724/SP.J.1006.2008.01169