Publications
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“Association between the CYP1A1 polymorphisms and hepatocellular carcinoma: a meta-analysis”, vol. 14, pp. 1076-1084, 2015.
, “Decreased expression of tumor suppressive miR-874 and its clinical significance in human osteosarcoma”, vol. 14, pp. 18315-18324, 2015.
, “Salicornia europaea L. Na+/H+ antiporter gene improves salt tolerance in transgenic alfalfa (Medicago sativa L.)”, vol. 13, pp. 5350-5360, 2014.
, “Interleukin-10 promoter polymorphisms associated with susceptibility to lumbar disc degeneration in a Chinese cohort”, vol. 10, pp. 1719-1727, 2011.
, Ahn SH, Cho YW, Ahn MW, Jang SH, et al. (2002). mRNA expression of cytokines and chemokines in herniated lumbar intervertebral discs. Spine 27: 911-917.
http://dx.doi.org/10.1097/00007632-200205010-00005
PMid:11979160
Akyol S, Eraslan BS, Etyemez H and Tanriverdi T (2010). Catabolic cytokine expressions in patients with degenerative disc disease. Turk. Neurosurg. 20: 492-499.
PMid:20963699
Battie MC, Videman T and Parent E (2004). Lumbar disc degeneration: epidemiology and genetic influences. Spine 29: 2679-2690.
PMid:15564917
Claudino M, Trombone AP, Cardoso CR, Ferreira SB Jr, et al. (2008). The broad effects of the functional IL-10 promoter-592 polymorphism: modulation of IL-10, TIMP-3, and OPG expression and their association with periodontal disease outcome. J. Leukoc. Biol. 84: 1565-1573.
http://dx.doi.org/10.1189/jlb.0308184
PMid:18725394
Hassett G, Hart DJ, Manek NJ, Doyle DV, et al. (2003). Risk factors for progression of lumbar spine disc degeneration: the Chingford Study. Arthritis Rheum. 48: 3112-3117.
http://dx.doi.org/10.1002/art.11321
Holm S, Mackiewicz Z, Holm AK, Konttinen YT, et al. (2009). Pro-inflammatory, pleiotropic, and anti-inflammatory TNF-alpha, IL-6, and IL-10 in experimental porcine intervertebral disk degeneration. Vet. Pathol. 46: 1292-1300.
http://dx.doi.org/10.1354/vp.07-VP-0179-K-FL
PMid:19605905
Igarashi A, Kikuchi S, Konno S and Olmarker K (2004). Inflammatory cytokines released from the facet joint tissue in degenerative lumbar spinal disorders. Spine 29: 2091-2095.
http://dx.doi.org/10.1097/01.brs.0000141265.55411.30
PMid:15454697
Iguchi T, Kanemura A, Kasahara K, Kurihara A, et al. (2003). Age distribution of three radiologic factors for lumbar instability: probable aging process of the instability with disc degeneration. Spine 28: 2628-2633.
http://dx.doi.org/10.1097/01.BRS.0000097162.80495.66
PMid:14652480
Kawaguchi S, Yamashita T, Yokogushi K, Murakami T, et al. (2001). Immunophenotypic analysis of the inflammatory infiltrates in herniated intervertebral discs. Spine 26: 1209-1214.
http://dx.doi.org/10.1097/00007632-200106010-00008
PMid:11389385
Kawaguchi S, Yamashita T, Katahira G, Yokozawa H, et al. (2002). Chemokine profile of herniated intervertebral discs infiltrated with monocytes and macrophages. Spine 27: 1511-1516.
http://dx.doi.org/10.1097/00007632-200207150-00006
PMid:12131709
Kurreeman FA, Schonkeren JJ, Heijmans BT, Toes RE, et al. (2004). Transcription of the IL10 gene reveals allele-specific regulation at the mRNA level. Hum. Mol. Genet. 13: 1755-1762.
http://dx.doi.org/10.1093/hmg/ddh187
PMid:15198994
Lalani I, Bhol K and Ahmed AR (1997). Interleukin-10: biology, role in inflammation and autoimmunity. Ann. Allergy Asthma Immunol. 79: 469-483.
http://dx.doi.org/10.1016/S1081-1206(10)63052-9
Ma SL, Tang NL, Lam LC and Chiu HF (2005). The association between promoter polymorphism of the interleukin-10 gene and Alzheimerâs disease. Neurobiol. Aging 26: 1005-1010.
http://dx.doi.org/10.1016/j.neurobiolaging.2004.08.010
PMid:15748779
Matsui H, Kanamori M, Ishihara H, Yudoh K, et al. (1998). Familial predisposition for lumbar degenerative disc disease. A case-control study. Spine 23: 1029-1034.
http://dx.doi.org/10.1097/00007632-199805010-00013
PMid:9589542
Park BL, Han IK, Lee HS, Kim LH, et al. (2004). Association of interleukin 10 haplotype with low bone mineral density in Korean postmenopausal women. J. Biochem. Mol. Biol. 37: 691-699.
http://dx.doi.org/10.5483/BMBRep.2004.37.6.691
PMid:15607028
Pye SR, Reid DM, Adams JE, Silman AJ, et al. (2006). Radiographic features of lumbar disc degeneration and bone mineral density in men and women. Ann. Rheum. Dis. 65: 234-238.
http://dx.doi.org/10.1136/ard.2005.038224
PMid:16014671 PMCid:1798008
Rees LE, Wood NA, Gillespie KM, Lai KN, et al. (2002). The interleukin-10-1082 G/A polymorphism: allele frequency in different populations and functional significance. Cell. Mol. Life Sci. 59: 560-569.
http://dx.doi.org/10.1007/s00018-002-8448-0
Reuss E, Fimmers R, Kruger A, Becker C, et al. (2002). Differential regulation of interleukin-10 production by genetic and environmental factors - a twin study. Genes Immun. 3: 407-413.
http://dx.doi.org/10.1038/sj.gene.6363920
PMid:12424622
Sambrook PN, MacGregor AJ and Spector TD (1999). Genetic influences on cervical and lumbar disc degeneration: a magnetic resonance imaging study in twins. Arthritis Rheum. 42: 366-372.
http://dx.doi.org/10.1002/1529-0131(199902)42:2<366::AID-ANR20>3.0.CO;2-6
Scuderi GJ, Brusovanik GV, Anderson DG, Dunham CJ, et al. (2006). Cytokine assay of the epidural space lavage in patients with lumbar intervertebral disk herniation and radiculopathy. J. Spinal Disord. Tech. 19: 266-269.
http://dx.doi.org/10.1097/01.bsd.0000204501.22343.99
Solovieva S, Lohiniva J, Leino-Arjas P, Raininko R, et al. (2006). Intervertebral disc degeneration in relation to the COL9A3 and the IL-1ss gene polymorphisms. Eur. Spine J. 15: 613-619.
http://dx.doi.org/10.1007/s00586-005-0988-1
PMid:16133074
Tworek D and Kuna P (2005). The role of interleukin 10 in allergic inflammation. Pol. Merkur Lekarski. 18: 125-128.
Valdes AM, Hassett G, Hart DJ and Spector TD (2005). Radiographic progression of lumbar spine disc degeneration is influenced by variation at inflammatory genes: a candidate SNP association study in the Chingford cohort. Spine 30: 2445-2451.
http://dx.doi.org/10.1097/01.brs.0000184369.79744.a5
PMid:16261124
Woertgen C, Rothoerl RD and Brawanski A (2000). Influence of macrophage infiltration of herniated lumbar disc tissue on outcome after lumbar disc surgery. Spine 25: 871-875.
http://dx.doi.org/10.1097/00007632-200004010-00017
PMid:10751300
“Characterization of the complete mitochondrial genome of the Rock pigeon, Columba livia (Columbiformes: Columbidae)”, vol. 9, pp. 1234-1249, 2010.
, Boore JL (1999). Animal mitochondrial genomes. Nucleic Acids Res. 27: 1767-1780.
http://dx.doi.org/10.1093/nar/27.8.1767
PMid:10101183 PMCid:148383
Brown GG, Gadaleta G, Pepe G, Saccone C, et al. (1986). Structural conservation and variation in the D-loop-containing region of vertebrate mitochondrial DNA. J. Mol. Biol. 192: 503-511.
http://dx.doi.org/10.1016/0022-2836(86)90272-X
Cooper A, Lalueza-Fox C, Anderson S, Rambaut A, et al. (2001). Complete mitochondrial genome sequences of two extinct moas clarify ratite evolution. Nature 409: 704-707.
http://dx.doi.org/10.1038/35055536
PMid:11217857
Gibb GC, Kardailsky O, Kimball RT, Braun EL, et al. (2007). Mitochondrial genomes and avian phylogeny: complex characters and resolvability without explosive radiations. Mol. Biol. Evol. 24: 269-280.
http://dx.doi.org/10.1093/molbev/msl158
PMid:17062634
Haddrath O and Baker AJ (2001). Complete mitochondrial DNA genome sequences of extinct birds: ratite phylogenetics and the vicariance biogeography hypothesis. Proc. Biol. Sci. 268: 939-945.
http://dx.doi.org/10.1098/rspb.2001.1587
PMid:11370967 PMCid:1088691
Hall AT (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids Symp. Ser. 41: 95-98.
Harlid A, Janke A and Arnason U (1998). The complete mitochondrial genome of Rhea americana and early avian divergences. J. Mol. Evol. 46: 669-679.
http://dx.doi.org/10.1007/PL00006347
PMid:9608049
Harrison GL, McLenachan PA, Phillips MJ, Slack KE, et al. (2004). Four new avian mitochondrial genomes help get to basic evolutionary questions in the late cretaceous. Mol. Biol. Evol. 21: 974-983.
http://dx.doi.org/10.1093/molbev/msh065
PMid:14739240
Hazkani-Covo E, Zeller RM and Martin W (2010). Molecular poltergeists: mitochondrial DNA copies (numts) in sequenced nuclear genomes. PLoS Genet. 6: e1000834.
http://dx.doi.org/10.1371/journal.pgen.1000834
PMid:20168995 PMCid:2820518
Howard R and Moore A (2003). The Howard and Moore Complete Checklist of the Birds of the World. 3rd edn. Christopher Helm, London.
L'Abbé D, Duhaime JF, Lang BF and Morais R (1991). The transcription of DNA in chicken mitochondria initiates from one major bidirectional promoter. J. Biol. Chem. 266: 10844-10850.
PMid:1710214
Larkin MA, Blackshields G, Brown NP, Chenna R, et al. (2007). Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948.
http://dx.doi.org/10.1093/bioinformatics/btm404
PMid:17846036
Livezey BC and Zusi RL (2007). Higher-order phylogeny of modern birds (Theropoda, Aves: Neornithes) based on comparative anatomy. II. Analysis and discussion. Zool. J. Linn. Soc. 149: 1-95.
http://dx.doi.org/10.1111/j.1096-3642.2006.00293.x
PMid:18784798 PMCid:2517308
Lohse M, Drechsel O and Bock R (2007). OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes. Curr. Genet. 52: 267-274.
http://dx.doi.org/10.1007/s00294-007-0161-y
PMid:17957369
Lowe TM and Eddy SR (1997). tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964.
PMid:9023104 PMCid:146525
Mindell DP, Sorenson MD and Dimcheff DE (1998). Multiple independent origins of mitochondrial gene order in birds. Proc. Natl. Acad. Sci. U. S. A. 95: 10693-10697.
http://dx.doi.org/10.1073/pnas.95.18.10693
PMid:9724766 PMCid:27957
Moore WS (1995). Inferring phylogenies from mtDNA variation: mitochondrial-gene trees versus nuclear-gene trees. Evolution 49: 718-726.
http://dx.doi.org/10.2307/2410325
Morgan-Richards M, Trewick SA, Bartosch-Harlid A, Kardailsky O, et al. (2008). Bird evolution: testing the Metaves clade with six new mitochondrial genomes. BMC Evol. Biol. 8: 20.
http://dx.doi.org/10.1186/1471-2148-8-20
PMid:18215323 PMCid:2259304
Nishibori M, Hayashi T, Tsudzuki M, Yamamoto Y, et al. (2001). Complete sequence of the Japanese quail (Coturnix japonica) mitochondrial genome and its genetic relationship with related species. Anim. Genet. 32: 380-385.
http://dx.doi.org/10.1046/j.1365-2052.2001.00795.x
PMid:11736810
Nishibori M, Shimogiri T, Hayashi T and Yasue H (2005). Molecular evidence for hybridization of species in the genus Gallus except for Gallus varius. Anim Genet. 36: 367-375.
http://dx.doi.org/10.1111/j.1365-2052.2005.01318.x
PMid:16167978
Paton T, Haddrath O and Baker AJ (2002). Complete mitochondrial DNA genome sequences show that modern birds are not descended from transitional shorebirds. Proc. Biol. Sci. 269: 839-846.
http://dx.doi.org/10.1098/rspb.2002.1961
PMid:11958716 PMCid:1690957
Pereira SL, Johnson KP, Clayton DH and Baker AJ (2007). Mitochondrial and nuclear DNA sequences support a Cretaceous origin of Columbiformes and a dispersal-driven radiation in the Paleocene. Syst. Biol. 56: 656-672.
http://dx.doi.org/10.1080/10635150701549672
PMid:17661233
Perna NT and Kocher TD (1995). Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes. J. Mol. Evol. 41: 353-358.
http://dx.doi.org/10.1007/BF01215182
PMid:7563121
Pratt RC, Gibb GC, Morgan-Richards M, Phillips MJ, et al. (2009). Toward resolving deep neoaves phylogeny: data, signal enhancement, and priors. Mol. Biol. Evol. 26: 313-326.
http://dx.doi.org/10.1093/molbev/msn248
PMid:18981298
Randi E and Lucchini V (1998). Organization and evolution of the mitochondrial DNA control region in the avian genus Alectoris. J. Mol. Evol. 47: 449-462.
http://dx.doi.org/10.1007/PL00006402
PMid:9767690
Rokas A, Williams BL, King N and Carroll SB (2003). Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature 425: 798-804.
http://dx.doi.org/10.1038/nature02053
PMid:14574403
Saccone C, Pesole G and Sbisa E (1991). The main regulatory region of mammalian mitochondrial DNA: structure-function model and evolutionary pattern. J. Mol. Evol. 33: 83-91.
http://dx.doi.org/10.1007/BF02100199
PMid:1909377
Sambrook J and Russell DW (2001). Molecular Cloning: A Laboratory Manual. 3rd edn. Cold Spring Harbor Laboratory Press, New York.
San Mauro D, Garcia-Paris M and Zardoya R (2004). Phylogenetic relationships of discoglossid frogs (Amphibia: Anura: Discoglossidae) based on complete mitochondrial genomes and nuclear genes. Gene 343: 357-366.
http://dx.doi.org/10.1016/j.gene.2004.10.001
PMid:15588590
Sbisa E, Tanzariello F, Reyes A, Pesole G, et al. (1997). Mammalian mitochondrial D-loop region structural analysis: identification of new conserved sequences and their functional and evolutionary implications. Gene 205: 125-140.
http://dx.doi.org/10.1016/S0378-1119(97)00404-6
Shadel GS and Clayton DA (1997). Mitochondrial DNA maintenance in vertebrates. Annu. Rev. Biochem. 66: 409-435.
http://dx.doi.org/10.1146/annurev.biochem.66.1.409
PMid:9242913
Shen X, Tian M, Liu Z, Cheng H, et al. (2009). Complete mitochondrial genome of the sea cucumber Apostichopus japonicus (Echinodermata: Holothuroidea): the first representative from the subclass Aspidochirotacea with the echinoderm ground pattern. Gene 439: 79-86.
http://dx.doi.org/10.1016/j.gene.2009.03.008
PMid:19306915
Slack KE, Janke A, Penny D and Arnason U (2003). Two new avian mitochondrial genomes (penguin and goose) and a summary of bird and reptile mitogenomic features. Gene 302: 43-52.
http://dx.doi.org/10.1016/S0378111902010533
PMid:12527195
Slack KE, Jones CM, Ando T, Harrison GL, et al. (2006). Early penguin fossils, plus mitochondrial genomes, calibrate avian evolution. Mol. Biol. Evol. 23: 1144-1155.
http://dx.doi.org/10.1093/molbev/msj124
PMid:16533822
Slack KE, Delsuc F, McLenachan PA, Arnason U, et al. (2007). Resolving the root of the avian mitogenomic tree by breaking up long branches. Mol. Phylogenet. Evol. 42: 1-13.
http://dx.doi.org/10.1016/j.ympev.2006.06.002
PMid:16854605
Walberg MW and Clayton DA (1981). Sequence and properties of the human KB cell and mouse L cell D-loop regions of mitochondrial DNA. Nucleic Acids Res. 9: 5411-5421.
http://dx.doi.org/10.1093/nar/9.20.5411
PMid:7301592 PMCid:327529
Wang C, Chen Q, Lu G, Xu J, et al. (2008). Complete mitochondrial genome of the grass carp (Ctenopharyngodon idella, Teleostei): insight into its phylogenic position within Cyprinidae. Gene 424: 96-101.
http://dx.doi.org/10.1016/j.gene.2008.07.011
PMid:18706492
Wolstenholme DR (1992). Animal mitochondrial DNA: structure and evolution. Int. Rev. Cytol. 141: 173-216.
http://dx.doi.org/10.1016/S0074-7696(08)62066-5
Wyman SK, Jansen RK and Boore JL (2004). Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20: 3252-3255.
http://dx.doi.org/10.1093/bioinformatics/bth352
PMid:15180927
Xia X and Xie Z (2001). DAMBE: software package for data analysis in molecular biology and evolution. J. Hered. 92: 371-373.
http://dx.doi.org/10.1093/jhered/92.4.371
PMid:11535656