Publications
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“Diffuse large B-cell lymphoma in the primary bone marrow”, vol. 14. pp. 6247-6250, 2015.
, “Mutational analysis of BRCA1/2 gene and pathologic characteristics from Kazakh population with sporadic breast cancer in northwestern China”, vol. 14, pp. 13151-13161, 2015.
, “Postpartum pelvic floor function performance after two different modes of delivery”, vol. 14, pp. 2994-3001, 2015.
, “Effect of radiotherapy on the treatment of patients with extensive stage small cell lung cancer”, vol. 13, pp. 8577-8585, 2014.
, “Gene expression during induced differentiation of sheep bone marrow mesenchymal stem cells into osteoblasts”, vol. 12, pp. 6527-6534, 2013.
, “Genetic association of UBE2B variants with susceptibility to male infertility in a Northeast Chinese population”, vol. 11, pp. 4226-4234, 2012.
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Baarends WM, Wassenaar E, Hoogerbrugge JW, van Cappellen G, et al. (2003). Loss of HR6B ubiquitin-conjugating activity results in damaged synaptonemal complex structure and increased crossing-over frequency during the male meiotic prophase. Mol. Cell. Biol. 23: 1151-1162.
http://dx.doi.org/10.1128/MCB.23.4.1151-1162.2003
PMid:12556476 PMCid:141135
Ciechanover A (1996). Ubiquitin-mediated proteolysis and male sterility. Nat. Med. 2: 1188-1190.
http://dx.doi.org/10.1038/nm1196-1188
PMid:8898739
Escalier D and Serres C (1985). Aberrant distribution of the peri-axonemal structures in the human spermatozoon: possible role of the axoneme in the spatial organization of the flagellar components. Biol. Cell 53: 239-250.
http://dx.doi.org/10.1111/j.1768-322X.1985.tb00372.x
PMid:3160418
Escalier D, Bai XY, Silvius D, Xu PX, et al. (2003). Spermatid nuclear and sperm periaxonemal anomalies in the mouse Ube2b null mutant. Mol. Reprod. Dev. 65: 298-308.
http://dx.doi.org/10.1002/mrd.10290
PMid:12784252
Grootegoed JA, Siep M and Baarends WM (2000). Molecular and cellular mechanisms in spermatogenesis. Baillieres Best Pract. Res. Clin. Endocrinol. Metab. 14: 331-343.
http://dx.doi.org/10.1053/beem.2000.0083
PMid:11097779
Huang I, Emery BR, Christensen GL, Griffin J, et al. (2008). Novel UBE2B-associated polymorphisms in an azoospermic/ oligozoospermic population. Asian J. Androl. 10: 461-466.
http://dx.doi.org/10.1111/j.1745-7262.2008.00386.x
PMid:18385908
Li Z, Zhang Z, He Z, Tang W, et al. (2009). A partition-ligation-combination-subdivision EM algorithm for haplotype inference with multiallelic markers: update of the SHEsis (http://analysis.bio-x.cn). Cell Res. 19: 519-523.
http://dx.doi.org/10.1038/cr.2009.33
PMid:19290020
Nishimune Y and Tanaka H (2006). Infertility caused by polymorphisms or mutations in spermatogenesis-specific genes. J. Androl. 27: 326-334.
http://dx.doi.org/10.2164/jandrol.05162
PMid:16474012
Pengo M, Ferlin A, Arredi B, Ganz F, et al. (2006). FSH receptor gene polymorphisms in fertile and infertile Italian men. Reprod. Biomed. Online 13: 795-800.
http://dx.doi.org/10.1016/S1472-6483(10)61026-7
Rajapurohitam V, Morales CR, El-Alfy M, Lefrancois S, et al. (1999). Activation of a UBC4-dependent pathway of ubiquitin conjugation during postnatal development of the rat testis. Dev. Biol. 212: 217-228.
http://dx.doi.org/10.1006/dbio.1999.9342
PMid:10419697
Rajapurohitam V, Bedard N and Wing SS (2002). Control of ubiquitination of proteins in rat tissues by ubiquitin conjugating enzymes and isopeptidases. Am. J. Physiol. Endocrinol. Metab. 282: E739-E745.
PMid:11882492
Roest HP, van Klaveren J, de Wit J, van Gurp CG, et al. (1996). Inactivation of the HR6B ubiquitin-conjugating DNA repair enzyme in mice causes male sterility associated with chromatin modification. Cell 86: 799-810.
http://dx.doi.org/10.1016/S0092-8674(00)80154-3
Serres C, Feneux D and Jouannet P (1986). Abnormal distribution of the periaxonemal structures in a human sperm flagellar dyskinesia. Cell Motil. Cytoskeleton 6: 68-76.
http://dx.doi.org/10.1002/cm.970060109
PMid:3698108
Shi YY and He L (2005). SHEsis, a powerful software platform for analyses of linkage disequilibrium, haplotype construction, and genetic association at polymorphism loci. Cell Res. 15: 97-98.
http://dx.doi.org/10.1038/sj.cr.7290272
PMid:15740637
Suryavathi V, Khattri A, Gopal K, Rani DS, et al. (2008). Novel variants in UBE2B gene and idiopathic male infertility. J. Androl. 29: 564-571.
http://dx.doi.org/10.2164/jandrol.107.004580
PMid:18497339
World Health Organization (1999). WHO Laboratory Manual for the Examination of Human Semen and Sperm-Cervical Mucus Interaction. 4th edn. Cambridge University Press, Cambridge.
“An improved reverse dot hybridization for simple and rapid detection of adefovir dipivoxil-resistant hepatitis B virus”, vol. 11, pp. 53-60, 2012.
, Aloman C and Wands JR (2003). Resistance of HBV to adefovir dipivoxil: a case for combination antiviral therapy? Hepatology 38: 1584-1587.
http://dx.doi.org/10.1002/hep.510380633
PMid:14655682
Chan V, Yam I, Chen FE and Chan TK (1999). A reverse dot-blot method for rapid detection of non-deletion alpha thalassaemia. Br. J. Haematol. 104: 513-515.
http://dx.doi.org/10.1046/j.1365-2141.1999.01221.x
PMid:10086788
Dai CY, Chuang WL, Hsieh MY and Lee LP (2007). Adefovir dipivoxil treatment of lamivudine-resistant chronic hepatitis B. Antiviral Res. 75: 146-151.
http://dx.doi.org/10.1016/j.antiviral.2007.02.003
PMid:17400303
Delaney WE (2007). Progress in the treatment of chronic hepatitis B: long-term experience with adefovir dipivoxil. J. Antimicrob. Chemother. 59: 827-832.
http://dx.doi.org/10.1093/jac/dkl551
PMid:17332007
Fung SK, Chae HB, Fontana RJ, Conjeevaram H, et al. (2006). Virologic response and resistance to adefovir in patients with chronic hepatitis B. J. Hepatol. 44: 283-290.
http://dx.doi.org/10.1016/j.jhep.2005.10.018
PMid:16338024
Hadziyannis SJ, Tassopoulos NC, Heathcote EJ, Chang TT, et al. (2006). Long-term therapy with adefovir dipivoxil for HBeAg-negative chronic hepatitis B for up to 5 years. Gastroenterology 131: 1743-1751.
http://dx.doi.org/10.1053/j.gastro.2006.09.020
PMid:17087951
Lok AS, Zoulim F, Locarnini S, Bartholomeusz A, et al. (2007). Antiviral drug-resistant HBV: standardization of nomenclature and assays and recommendations for management. Hepatology 46: 254-265.
http://dx.doi.org/10.1002/hep.21698
PMid:17596850
Lovicu M, Dessi V, Zappu A, De VS, et al. (2003). Efficient strategy for molecular diagnosis of Wilson disease in the sardinian population. Clin. Chem. 49: 496-498.
http://dx.doi.org/10.1373/49.3.496
PMid:12600964
Luan J, Yuan J, Li X, Jin S, et al. (2009). Multiplex detection of 60 hepatitis B virus variants by maldi-tof mass spectrometry. Clin. Chem. 55: 1503-1509.
http://dx.doi.org/10.1373/clinchem.2009.124859
PMid:19541863
Moskovitz DN, Osiowy C, Giles E, Tomlinson G, et al. (2005). Response to long-term lamivudine treatment (up to 5 years) in patients with severe chronic hepatitis B, role of genotype and drug resistance. J. Viral. Hepat. 12: 398-404.
http://dx.doi.org/10.1111/j.1365-2893.2005.00613.x
PMid:15985011
Ohishi W, Shirakawa H, Kawakami Y, Kimura S, et al. (2004). Identification of rare polymerase variants of hepatitis B virus using a two-stage PCR with peptide nucleic acid clamping. J. Med. Virol. 72: 558-565.
http://dx.doi.org/10.1002/jmv.20026
PMid:14981758
Osiowy C, Villeneuve JP, Heathcote EJ, Giles E, et al. (2006). Detection of rtN236T and rtA181V/T mutations associated with resistance to adefovir dipivoxil in samples from patients with chronic hepatitis B virus infection by the INNO-LiPA HBV DR line probe assay (version 2). J. Clin. Microbiol. 44: 1994-1997.
http://dx.doi.org/10.1128/JCM.02477-05
PMid:16757589 PMCid:1489409
Perz JF, Armstrong GL, Farrington LA, Hutin YJ, et al. (2006). The contributions of hepatitis B virus and hepatitis C virus infections to cirrhosis and primary liver cancer worldwide. J. Hepatol. 45: 529-538.
http://dx.doi.org/10.1016/j.jhep.2006.05.013
PMid:16879891
Santantonio T, Fasano M, Durantel S, Barraud L, et al. (2009). Adefovir dipivoxil resistance patterns in patients with lamivudine-resistant chronic hepatitis B. Antivir. Ther. 14: 557-565.
PMid:19578241
Tran N, Berne R, Chann R, Gauthier M, et al. (2006). European multicenter evaluation of high-density DNA probe arrays for detection of hepatitis B virus resistance mutations and identification of genotypes. J. Clin. Microbiol. 44: 2792-2800.
http://dx.doi.org/10.1128/JCM.00295-06
PMid:16891494 PMCid:1594645
Villet S, Pichoud C, Billioud G, Barraud L, et al. (2008). Impact of hepatitis B virus rtA181V/T mutants on hepatitis B treatment failure. J. Hepatol. 48: 747-755.
http://dx.doi.org/10.1016/j.jhep.2008.01.027
PMid:18331765
Wang YZ, Xiao JH, Ruan LH, Zhang HY, et al. (2009). Detection of the rtA181V/T and rtN236T mutations associated with resistance to adefovir dipivoxil using a ligase detection reaction assay. Clin. Chim. Acta 408: 70-74.
http://dx.doi.org/10.1016/j.cca.2009.07.016
PMid:19651117
Zhao Y, Zhang XY, Guo JJ, Zeng AZ, et al. (2010). Simultaneous genotyping and quantification of hepatitis B virus for genotypes B and C by real-time PCR assay. J. Clin. Microbiol. 48: 3690-3697.
http://dx.doi.org/10.1128/JCM.00741-10
PMid:20720032 PMCid:2953110
“Proteomic and bioinformatic analysis of outer membrane proteins of the protobacterium Bartonella henselae (Bartonellaceae)”, vol. 10, pp. 1789-1818, 2011.
, Alsmark CM, Frank AC, Karlberg EO, Legault BA, et al. (2004). The louse-borne human pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae. Proc. Natl. Acad. Sci. U. S. A. 101: 9716-9721.
http://dx.doi.org/10.1073/pnas.0305659101
PMid:15210978 PMCid:470741
Arnold K, Bordoli L, Kopp J and Schwede T (2006). The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22: 195-201.
http://dx.doi.org/10.1093/bioinformatics/bti770
PMid:16301204
Babujee L, Venkatesh B, Yamazaki A and Tsuyumu S (2007). Proteomic analysis of the carbonate insoluble outer membrane fraction of the soft-rot pathogen Dickeya dadantii (syn. Erwinia chrysanthemi) strain 3937. J. Proteome Res. 6: 62-69.
http://dx.doi.org/10.1021/pr060423l
PMid:17203949
Biswas S, Raoult D and Rolain JM (2008). A bioinformatic approach to understanding antibiotic resistance in intracellular bacteria through whole genome analysis. Int. J. Antimicrob. Agents 32: 207-220.
http://dx.doi.org/10.1016/j.ijantimicag.2008.03.017
PMid:18619818
Boonjakuakul JK, Gerns HL, Chen YT, Hicks LD, et al. (2007). Proteomic and immunoblot analyses of Bartonella quintana total membrane proteins identify antigens recognized by sera from infected patients. Infect. Immun. 75: 2548-2561.
http://dx.doi.org/10.1128/IAI.01974-06
PMid:17307937 PMCid:1865797
Burgess AW, Paquet JY, Letesson JJ and Anderson BE (2000). Isolation, sequencing and expression of Bartonella henselae omp43 and predicted membrane topology of the deduced protein. Microb. Pathog. 29: 73-80.
http://dx.doi.org/10.1006/mpat.2000.0366
PMid:10906262
Carroll JA, Coleman SA, Smitherman LS and Minnick MF (2000). Hemin-binding surface protein from Bartonella quintana. Infect. Immun. 68: 6750-6757.
http://dx.doi.org/10.1128/IAI.68.12.6750-6757.2000
PMid:11083791 PMCid:97776
Cash P (2006). Analyzing bacterial pathogenesis at level of proteome. Methods Biochem. Anal. 49: 211-235.
PMid:16929681
Chenoweth MR, Greene CE, Krause DC and Gherardini FC (2004). Predominant outer membrane antigens of Bartonella henselae. Infect. Immun. 72: 3097-3105.
http://dx.doi.org/10.1128/IAI.72.6.3097-3105.2004
PMid:15155610 PMCid:415646
Dabo SM, Confer AW, Saliki JT and Anderson BE (2006). Binding of Bartonella henselae to extracellular molecules: identification of potential adhesins. Microb. Pathog. 41: 10-20.
http://dx.doi.org/10.1016/j.micpath.2006.04.003
PMid:16725305
Dehio C (2004). Molecular and cellular basis of Bartonella pathogenesis. Annu. Rev. Microbiol. 58: 365-390.
http://dx.doi.org/10.1146/annurev.micro.58.030603.123700
PMid:15487942
Ebanks RO, Goguen M, McKinnon S, Pinto DM, et al. (2005). Identification of the major outer membrane proteins of Aeromonas salmonicida. Dis. Aquat. Organ. 68: 29-38.
http://dx.doi.org/10.3354/dao068029
PMid:16465831
Gasteiger E, Hoogland C, Gattiker A, Duvaud S, et al. (2005). Protein Identification and Analysis Tools on the ExPASy Server. In: The Proteomics Protocols Handbook (Walker JW, ed). Humana Press, Clifton, 571-607.
http://dx.doi.org/10.1385/1-59259-890-0:571
Geourjon C and Deleage G (1995). SOPMA: significant improvements in protein secondary structure prediction by consensus prediction from multiple alignments. Comput. Appl. Biosci. 11: 681-684.
PMid:8808585
Hernandez-Mendoza A, Quinto C, Segovia L and Perez-Rueda E (2007). Ligand-binding prediction in the resistance-nodulation-cell division (RND) proteins. Comput. Biol. Chem. 31: 115-123.
http://dx.doi.org/10.1016/j.compbiolchem.2007.02.003
PMid:17416336
Higgins MK, Eswaran J, Edwards P, Schertler GF, et al. (2004). Structure of the ligand-blocked periplasmic entrance of the bacterial multidrug efflux protein TolC. J. Mol. Biol. 342: 697-702.
http://dx.doi.org/10.1016/j.jmb.2004.07.088
PMid:15342230
Jungblut PR, Schiele F, Zimny-Arndt U, Ackermann R, et al. (2010). Helicobacter pylori proteomics by 2-DE/MS, 1-DE-LC/MS and functional data mining. Proteomics 10: 182-193.
http://dx.doi.org/10.1002/pmic.200900361
PMid:19941309
Lu Z, Szafron D, Greiner R, Lu P, et al. (2004). Predicting subcellular localization of proteins using machine-learned classifiers. Bioinformatics 20: 547-556.
http://dx.doi.org/10.1093/bioinformatics/btg447
PMid:14990451
Maurin M, Gasquet S, Ducco C and Raoult D (1995). MICs of 28 antibiotic compounds for 14 Bartonella (formerly Rochalimaea) isolates. Antimicrob. Agents Chemother. 39: 2387-2391.
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Minnick MF, Sappington KN, Smitherman LS, Andersson SG, et al. (2003). Five-member gene family of Bartonella quintana. Infect. Immun. 71: 814-821.
http://dx.doi.org/10.1128/IAI.71.2.814-821.2003
PMid:12540561 PMCid:145397
Molloy MP, Herbert BR, Slade MB, Rabilloud T, et al. (2000). Proteomic analysis of the Escherichia coli outer membrane. Eur. J. Biochem. 267: 2871-2881.
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Neuhoff V, Stamm R and Eibl H (1985). Clear background and highly sensitive protein staining with Coomassie blue dyes in polyacrylamide gels: a systematic analysis. Electrophoresis 6: 427-448.
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Ochsner UA, Vasil AI, Johnson Z and Vasil ML (1999). Pseudomonas aeruginosa fur overlaps with a gene encoding a novel outer membrane lipoprotein, OmlA. J. Bacteriol. 181: 1099-1109.
Okusu H, Ma D and Nikaido H (1996). AcrAB efflux pump plays a major role in the antibiotic resistance phenotype of Escherichia coli multiple-antibiotic-resistance (Mar) mutants. J. Bacteriol. 178: 306-308.
PMid:8550435 PMCid:177656
Pieper U, Eswar N, Webb BM, Eramian D, et al. (2009). MODBASE, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. 37: D347-D354.
http://dx.doi.org/10.1093/nar/gkn791
PMid:18948282 PMCid:2686492
Rey S, Acab M, Gardy JL, Laird MR, et al. (2005). PSORTdb: a protein subcellular localization database for bacteria. Nucleic Acids Res. 33: D164-D168.
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Rhomberg TA, Karlberg O, Mini T, Zimny-Arndt U, et al. (2004). Proteomic analysis of the sarcosine-insoluble outer membrane fraction of the bacterial pathogen Bartonella henselae. Proteomics 4: 3021-3033.
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PMid:15378747
Riess T, Raddatz G, Linke D, Schafer A, et al. (2007). Analysis of Bartonella adhesin A expression reveals differences between various B. henselae strains. Infect. Immun. 75: 35-43.
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PMid:17060468 PMCid:1828432
Schulein R, Guye P, Rhomberg TA, Schmid MC, et al. (2005). A bipartite signal mediates the transfer of type IV secretion substrates of Bartonella henselae into human cells. Proc. Natl. Acad. Sci. U. S. A. 102: 856-861.
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PMid:15642951 PMCid:545523
Szafron D, Lu P, Greiner R, Wishart DS, et al. (2004). Proteome analyst: custom predictions with explanations in a web-based tool for high-throughput proteome annotations. Nucleic Acids Res. 2: W365-W371.
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Tan S, Tan HT and Chung MC (2008). Membrane proteins and membrane proteomics. Proteomics 8: 3924-3932.
http://dx.doi.org/10.1002/pmic.200800597
PMid:18763712
Tusnády GE and Simon I (2001). The HMMTOP transmembrane topology prediction server. Bioinformatics 17: 849-850.
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Yang S, Clayton SR and Zechiedrich EL (2003). Relative contributions of the AcrAB, MdfA and NorE efflux pumps to quinolone resistance in Escherichia coli. J. Antimicrob. Chemother. 51: 545-556.
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PMid:12615854
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Zimmermann R, Kempf VA, Schiltz E, Oberle K, et al. (2003). Hemin binding, functional expression, and complementation analysis of Pap 31 from Bartonella henselae. J. Bacteriol. 185: 1739-1744.
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Zou Q, Yan X, Li B, Zeng X, et al. (2006). Proteome analysis of sorbitol fermentation specific protein in Vibrio cholerae by 2-DE and MS. Proteomics 6: 1848-1855.
http://dx.doi.org/10.1002/pmic.200401352
PMid:16525996