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2012
Y. Hu, Wen, W., Yu, J. - G., Qu, S. - Q., Wang, S. - S., Liu, J., Li, B. - S., and Luo, Y., Genetic association of UBE2B variants with susceptibility to male infertility in a Northeast Chinese population, vol. 11, pp. 4226-4234, 2012.
Baarends WM, Wassenaar E, Hoogerbrugge JW, van Cappellen G, et al. (2003). Loss of HR6B ubiquitin-conjugating activity results in damaged synaptonemal complex structure and increased crossing-over frequency during the male meiotic prophase. Mol. Cell. Biol. 23: 1151-1162. http://dx.doi.org/10.1128/MCB.23.4.1151-1162.2003 PMid:12556476 PMCid:141135   Ciechanover A (1996). Ubiquitin-mediated proteolysis and male sterility. Nat. Med. 2: 1188-1190. http://dx.doi.org/10.1038/nm1196-1188 PMid:8898739   Escalier D and Serres C (1985). Aberrant distribution of the peri-axonemal structures in the human spermatozoon: possible role of the axoneme in the spatial organization of the flagellar components. Biol. Cell 53: 239-250. http://dx.doi.org/10.1111/j.1768-322X.1985.tb00372.x PMid:3160418   Escalier D, Bai XY, Silvius D, Xu PX, et al. (2003). Spermatid nuclear and sperm periaxonemal anomalies in the mouse Ube2b null mutant. Mol. Reprod. Dev. 65: 298-308. http://dx.doi.org/10.1002/mrd.10290 PMid:12784252   Grootegoed JA, Siep M and Baarends WM (2000). Molecular and cellular mechanisms in spermatogenesis. Baillieres Best Pract. Res. Clin. Endocrinol. Metab. 14: 331-343. http://dx.doi.org/10.1053/beem.2000.0083 PMid:11097779   Huang I, Emery BR, Christensen GL, Griffin J, et al. (2008). Novel UBE2B-associated polymorphisms in an azoospermic/ oligozoospermic population. Asian J. Androl. 10: 461-466. http://dx.doi.org/10.1111/j.1745-7262.2008.00386.x PMid:18385908   Li Z, Zhang Z, He Z, Tang W, et al. (2009). A partition-ligation-combination-subdivision EM algorithm for haplotype inference with multiallelic markers: update of the SHEsis (http://analysis.bio-x.cn). Cell Res. 19: 519-523. http://dx.doi.org/10.1038/cr.2009.33 PMid:19290020   Nishimune Y and Tanaka H (2006). Infertility caused by polymorphisms or mutations in spermatogenesis-specific genes. J. Androl. 27: 326-334. http://dx.doi.org/10.2164/jandrol.05162 PMid:16474012   Pengo M, Ferlin A, Arredi B, Ganz F, et al. (2006). FSH receptor gene polymorphisms in fertile and infertile Italian men. Reprod. Biomed. Online 13: 795-800. http://dx.doi.org/10.1016/S1472-6483(10)61026-7   Rajapurohitam V, Morales CR, El-Alfy M, Lefrancois S, et al. (1999). Activation of a UBC4-dependent pathway of ubiquitin conjugation during postnatal development of the rat testis. Dev. Biol. 212: 217-228. http://dx.doi.org/10.1006/dbio.1999.9342 PMid:10419697   Rajapurohitam V, Bedard N and Wing SS (2002). Control of ubiquitination of proteins in rat tissues by ubiquitin conjugating enzymes and isopeptidases. Am. J. Physiol. Endocrinol. Metab. 282: E739-E745. PMid:11882492   Roest HP, van Klaveren J, de Wit J, van Gurp CG, et al. (1996). Inactivation of the HR6B ubiquitin-conjugating DNA repair enzyme in mice causes male sterility associated with chromatin modification. Cell 86: 799-810. http://dx.doi.org/10.1016/S0092-8674(00)80154-3   Serres C, Feneux D and Jouannet P (1986). Abnormal distribution of the periaxonemal structures in a human sperm flagellar dyskinesia. Cell Motil. Cytoskeleton 6: 68-76. http://dx.doi.org/10.1002/cm.970060109 PMid:3698108   Shi YY and He L (2005). SHEsis, a powerful software platform for analyses of linkage disequilibrium, haplotype construction, and genetic association at polymorphism loci. Cell Res. 15: 97-98. http://dx.doi.org/10.1038/sj.cr.7290272 PMid:15740637   Suryavathi V, Khattri A, Gopal K, Rani DS, et al. (2008). Novel variants in UBE2B gene and idiopathic male infertility. J. Androl. 29: 564-571. http://dx.doi.org/10.2164/jandrol.107.004580 PMid:18497339   World Health Organization (1999). WHO Laboratory Manual for the Examination of Human Semen and Sperm-Cervical Mucus Interaction. 4th edn. Cambridge University Press, Cambridge.
Y. Hu, Zhang, W. L., Xie, S. L., Zhao, Y., Hu, J. L., Cai, X. F., Lai, G. Q., and Huang, A. L., An improved reverse dot hybridization for simple and rapid detection of adefovir dipivoxil-resistant hepatitis B virus, vol. 11, pp. 53-60, 2012.
Aloman C and Wands JR (2003). Resistance of HBV to adefovir dipivoxil: a case for combination antiviral therapy? Hepatology 38: 1584-1587. http://dx.doi.org/10.1002/hep.510380633 PMid:14655682 Chan V, Yam I, Chen FE and Chan TK (1999). A reverse dot-blot method for rapid detection of non-deletion alpha thalassaemia. Br. J. Haematol. 104: 513-515. http://dx.doi.org/10.1046/j.1365-2141.1999.01221.x PMid:10086788 Dai CY, Chuang WL, Hsieh MY and Lee LP (2007). Adefovir dipivoxil treatment of lamivudine-resistant chronic hepatitis B. Antiviral Res. 75: 146-151. http://dx.doi.org/10.1016/j.antiviral.2007.02.003 PMid:17400303 Delaney WE (2007). Progress in the treatment of chronic hepatitis B: long-term experience with adefovir dipivoxil. J. Antimicrob. Chemother. 59: 827-832. http://dx.doi.org/10.1093/jac/dkl551 PMid:17332007 Fung SK, Chae HB, Fontana RJ, Conjeevaram H, et al. (2006). Virologic response and resistance to adefovir in patients with chronic hepatitis B. J. Hepatol. 44: 283-290. http://dx.doi.org/10.1016/j.jhep.2005.10.018 PMid:16338024 Hadziyannis SJ, Tassopoulos NC, Heathcote EJ, Chang TT, et al. (2006). Long-term therapy with adefovir dipivoxil for HBeAg-negative chronic hepatitis B for up to 5 years. Gastroenterology 131: 1743-1751. http://dx.doi.org/10.1053/j.gastro.2006.09.020 PMid:17087951 Lok AS, Zoulim F, Locarnini S, Bartholomeusz A, et al. (2007). Antiviral drug-resistant HBV: standardization of nomenclature and assays and recommendations for management. Hepatology 46: 254-265. http://dx.doi.org/10.1002/hep.21698 PMid:17596850 Lovicu M, Dessi V, Zappu A, De VS, et al. (2003). Efficient strategy for molecular diagnosis of Wilson disease in the sardinian population. Clin. Chem. 49: 496-498. http://dx.doi.org/10.1373/49.3.496 PMid:12600964 Luan J, Yuan J, Li X, Jin S, et al. (2009). Multiplex detection of 60 hepatitis B virus variants by maldi-tof mass spectrometry. Clin. Chem. 55: 1503-1509. http://dx.doi.org/10.1373/clinchem.2009.124859 PMid:19541863 Moskovitz DN, Osiowy C, Giles E, Tomlinson G, et al. (2005). Response to long-term lamivudine treatment (up to 5 years) in patients with severe chronic hepatitis B, role of genotype and drug resistance. J. Viral. Hepat. 12: 398-404. http://dx.doi.org/10.1111/j.1365-2893.2005.00613.x PMid:15985011 Ohishi W, Shirakawa H, Kawakami Y, Kimura S, et al. (2004). Identification of rare polymerase variants of hepatitis B virus using a two-stage PCR with peptide nucleic acid clamping. J. Med. Virol. 72: 558-565. http://dx.doi.org/10.1002/jmv.20026 PMid:14981758 Osiowy C, Villeneuve JP, Heathcote EJ, Giles E, et al. (2006). Detection of rtN236T and rtA181V/T mutations associated with resistance to adefovir dipivoxil in samples from patients with chronic hepatitis B virus infection by the INNO-LiPA HBV DR line probe assay (version 2). J. Clin. Microbiol. 44: 1994-1997. http://dx.doi.org/10.1128/JCM.02477-05 PMid:16757589    PMCid:1489409 Perz JF, Armstrong GL, Farrington LA, Hutin YJ, et al. (2006). The contributions of hepatitis B virus and hepatitis C virus infections to cirrhosis and primary liver cancer worldwide. J. Hepatol. 45: 529-538. http://dx.doi.org/10.1016/j.jhep.2006.05.013 PMid:16879891 Santantonio T, Fasano M, Durantel S, Barraud L, et al. (2009). Adefovir dipivoxil resistance patterns in patients with lamivudine-resistant chronic hepatitis B. Antivir. Ther. 14: 557-565. PMid:19578241 Tran N, Berne R, Chann R, Gauthier M, et al. (2006). European multicenter evaluation of high-density DNA probe arrays for detection of hepatitis B virus resistance mutations and identification of genotypes. J. Clin. Microbiol. 44: 2792-2800. http://dx.doi.org/10.1128/JCM.00295-06 PMid:16891494    PMCid:1594645 Villet S, Pichoud C, Billioud G, Barraud L, et al. (2008). Impact of hepatitis B virus rtA181V/T mutants on hepatitis B treatment failure. J. Hepatol. 48: 747-755. http://dx.doi.org/10.1016/j.jhep.2008.01.027 PMid:18331765 Wang YZ, Xiao JH, Ruan LH, Zhang HY, et al. (2009). Detection of the rtA181V/T and rtN236T mutations associated with resistance to adefovir dipivoxil using a ligase detection reaction assay. Clin. Chim. Acta 408: 70-74. http://dx.doi.org/10.1016/j.cca.2009.07.016 PMid:19651117 Zhao Y, Zhang XY, Guo JJ, Zeng AZ, et al. (2010). Simultaneous genotyping and quantification of hepatitis B virus for genotypes B and C by real-time PCR assay. J. Clin. Microbiol. 48: 3690-3697. http://dx.doi.org/10.1128/JCM.00741-10 PMid:20720032    PMCid:2953110
2011
D. M. Li, Liu, Q. Y., Zhao, F., Hu, Y., Xiao, D., Gu, Y. X., Song, X. P., and Zhang, J. Z., Proteomic and bioinformatic analysis of outer membrane proteins of the protobacterium Bartonella henselae (Bartonellaceae), vol. 10, pp. 1789-1818, 2011.
Alsmark CM, Frank AC, Karlberg EO, Legault BA, et al. (2004). The louse-borne human pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae. Proc. Natl. Acad. Sci. U. S. A. 101: 9716-9721. http://dx.doi.org/10.1073/pnas.0305659101 PMid:15210978    PMCid:470741 Arnold K, Bordoli L, Kopp J and Schwede T (2006). The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22: 195-201. http://dx.doi.org/10.1093/bioinformatics/bti770 PMid:16301204 Babujee L, Venkatesh B, Yamazaki A and Tsuyumu S (2007). Proteomic analysis of the carbonate insoluble outer membrane fraction of the soft-rot pathogen Dickeya dadantii (syn. Erwinia chrysanthemi) strain 3937. J. Proteome Res. 6: 62-69. http://dx.doi.org/10.1021/pr060423l PMid:17203949 Biswas S, Raoult D and Rolain JM (2008). A bioinformatic approach to understanding antibiotic resistance in intracellular bacteria through whole genome analysis. Int. J. Antimicrob. Agents 32: 207-220. http://dx.doi.org/10.1016/j.ijantimicag.2008.03.017 PMid:18619818 Boonjakuakul JK, Gerns HL, Chen YT, Hicks LD, et al. (2007). Proteomic and immunoblot analyses of Bartonella quintana total membrane proteins identify antigens recognized by sera from infected patients. Infect. Immun. 75: 2548-2561. http://dx.doi.org/10.1128/IAI.01974-06 PMid:17307937    PMCid:1865797 Burgess AW, Paquet JY, Letesson JJ and Anderson BE (2000). Isolation, sequencing and expression of Bartonella henselae omp43 and predicted membrane topology of the deduced protein. Microb. Pathog. 29: 73-80. http://dx.doi.org/10.1006/mpat.2000.0366 PMid:10906262 Carroll JA, Coleman SA, Smitherman LS and Minnick MF (2000). Hemin-binding surface protein from Bartonella quintana. Infect. Immun. 68: 6750-6757. http://dx.doi.org/10.1128/IAI.68.12.6750-6757.2000 PMid:11083791    PMCid:97776 Cash P (2006). Analyzing bacterial pathogenesis at level of proteome. Methods Biochem. Anal. 49: 211-235. PMid:16929681 Chenoweth MR, Greene CE, Krause DC and Gherardini FC (2004). Predominant outer membrane antigens of Bartonella henselae. Infect. Immun. 72: 3097-3105. http://dx.doi.org/10.1128/IAI.72.6.3097-3105.2004 PMid:15155610    PMCid:415646 Dabo SM, Confer AW, Saliki JT and Anderson BE (2006). Binding of Bartonella henselae to extracellular molecules: identification of potential adhesins. Microb. Pathog. 41: 10-20. http://dx.doi.org/10.1016/j.micpath.2006.04.003 PMid:16725305 Dehio C (2004). Molecular and cellular basis of Bartonella pathogenesis. Annu. Rev. Microbiol. 58: 365-390. http://dx.doi.org/10.1146/annurev.micro.58.030603.123700 PMid:15487942 Ebanks RO, Goguen M, McKinnon S, Pinto DM, et al. (2005). Identification of the major outer membrane proteins of Aeromonas salmonicida. Dis. Aquat. Organ. 68: 29-38. http://dx.doi.org/10.3354/dao068029 PMid:16465831 Gasteiger E, Hoogland C, Gattiker A, Duvaud S, et al. (2005). Protein Identification and Analysis Tools on the ExPASy Server. In: The Proteomics Protocols Handbook (Walker JW, ed). Humana Press, Clifton, 571-607. http://dx.doi.org/10.1385/1-59259-890-0:571 Geourjon C and Deleage G (1995). SOPMA: significant improvements in protein secondary structure prediction by consensus prediction from multiple alignments. Comput. Appl. Biosci. 11: 681-684. PMid:8808585 Hernandez-Mendoza A, Quinto C, Segovia L and Perez-Rueda E (2007). Ligand-binding prediction in the resistance-nodulation-cell division (RND) proteins. Comput. Biol. Chem. 31: 115-123. http://dx.doi.org/10.1016/j.compbiolchem.2007.02.003 PMid:17416336 Higgins MK, Eswaran J, Edwards P, Schertler GF, et al. (2004). Structure of the ligand-blocked periplasmic entrance of the bacterial multidrug efflux protein TolC. J. Mol. Biol. 342: 697-702. http://dx.doi.org/10.1016/j.jmb.2004.07.088 PMid:15342230 Jungblut PR, Schiele F, Zimny-Arndt U, Ackermann R, et al. (2010). Helicobacter pylori proteomics by 2-DE/MS, 1-DE-LC/MS and functional data mining. Proteomics 10: 182-193. http://dx.doi.org/10.1002/pmic.200900361 PMid:19941309 Lu Z, Szafron D, Greiner R, Lu P, et al. (2004). Predicting subcellular localization of proteins using machine-learned classifiers. Bioinformatics 20: 547-556. http://dx.doi.org/10.1093/bioinformatics/btg447 PMid:14990451 Maurin M, Gasquet S, Ducco C and Raoult D (1995). MICs of 28 antibiotic compounds for 14 Bartonella (formerly Rochalimaea) isolates. Antimicrob. Agents Chemother. 39: 2387-2391. PMid:8585713    PMCid:162952 Minnick MF, Sappington KN, Smitherman LS, Andersson SG, et al. (2003). Five-member gene family of Bartonella quintana. Infect. Immun. 71: 814-821. http://dx.doi.org/10.1128/IAI.71.2.814-821.2003 PMid:12540561    PMCid:145397 Molloy MP, Herbert BR, Slade MB, Rabilloud T, et al. (2000). Proteomic analysis of the Escherichia coli outer membrane. Eur. J. 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Nucleic Acids Res. 37: D347-D354. http://dx.doi.org/10.1093/nar/gkn791 PMid:18948282    PMCid:2686492 Rey S, Acab M, Gardy JL, Laird MR, et al. (2005). PSORTdb: a protein subcellular localization database for bacteria. Nucleic Acids Res. 33: D164-D168. http://dx.doi.org/10.1093/nar/gki027 PMid:15608169    PMCid:539981 Rhomberg TA, Karlberg O, Mini T, Zimny-Arndt U, et al. (2004). Proteomic analysis of the sarcosine-insoluble outer membrane fraction of the bacterial pathogen Bartonella henselae. Proteomics 4: 3021-3033. http://dx.doi.org/10.1002/pmic.200400933 PMid:15378747 Riess T, Raddatz G, Linke D, Schafer A, et al. (2007). Analysis of Bartonella adhesin A expression reveals differences between various B. henselae strains. Infect. Immun. 75: 35-43. http://dx.doi.org/10.1128/IAI.00963-06 PMid:17060468    PMCid:1828432 Schulein R, Guye P, Rhomberg TA, Schmid MC, et al. (2005). A bipartite signal mediates the transfer of type IV secretion substrates of Bartonella henselae into human cells. Proc. Natl. Acad. Sci. U. S. A. 102: 856-861. http://dx.doi.org/10.1073/pnas.0406796102 PMid:15642951    PMCid:545523 Szafron D, Lu P, Greiner R, Wishart DS, et al. (2004). Proteome analyst: custom predictions with explanations in a web-based tool for high-throughput proteome annotations. Nucleic Acids Res. 2: W365-W371. http://dx.doi.org/10.1093/nar/gkh485 PMid:15215412    PMCid:441623 Tan S, Tan HT and Chung MC (2008). Membrane proteins and membrane proteomics. Proteomics 8: 3924-3932. http://dx.doi.org/10.1002/pmic.200800597 PMid:18763712 Tusnády GE and Simon I (2001). The HMMTOP transmembrane topology prediction server. Bioinformatics 17: 849-850. http://dx.doi.org/10.1093/bioinformatics/17.9.849 PMid:11590105 Yang S, Clayton SR and Zechiedrich EL (2003). Relative contributions of the AcrAB, MdfA and NorE efflux pumps to quinolone resistance in Escherichia coli. J. 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