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2016
X. J. Sun, Zhou, L. Q., Tian, J. T., Liu, Z. H., Wu, B., Dong, Y. H., Yang, A. G., and Ma, W. M., Transcriptome survey of phototransduction and clock genes in marine bivalves, vol. 15, no. 4, p. -, 2016.
Conflicts of interestThe authors declare no conflict of interest.ACKNOWLEDGMENTSResearch supported by grants from the Basic Scientific Research Fund of YSFRI (#2060302201516054), the Zhejiang Provincial Top Key Discipline of Biological Engineering (#KF2015005), and the Independent Innovation Funds of Shandong Province (#2013CXC80202).REFERENCESFukushiro M, Takeuchi T, Takeuchi Y, Hur SP, et al (2011). Lunar phase-dependent expression of cryptochrome and a photoperiodic mechanism for lunar phase-recognition in a reef fish, goldlined spinefoot. PLoS One 6: e28643. http://dx.doi.org/10.1371/journal.pone.0028643 Golombek DA, Rosenstein RE, et al (2010). Physiology of circadian entrainment. Physiol. Rev. 90: 1063-1102. http://dx.doi.org/10.1152/physrev.00009.2009 Hardin PE, et al (2005). The circadian timekeeping system of Drosophila. Curr. Biol. 15: R714-R722. http://dx.doi.org/10.1016/j.cub.2005.08.019 Ikegami T, Takeuchi Y, Hur SP, Takemura A, et al (2014). Impacts of moonlight on fish reproduction. Mar. Genomics 14: 59-66. http://dx.doi.org/10.1016/j.margen.2013.11.007 Levitan DR, Fukami H, Jara J, Kline D, et al (2004). Mechanisms of reproductive isolation among sympatric broadcast-spawning corals of the Montastraea annularis species complex. Evolution 58: 308-323. http://dx.doi.org/10.1111/j.0014-3820.2004.tb01647.x Levy O, Appelbaum L, Leggat W, Gothlif Y, et al (2007). Light-responsive cryptochromes from a simple multicellular animal, the coral Acropora millepora. Science 318: 467-470. http://dx.doi.org/10.1126/science.1145432 Li DY, Wu N, Tu JB, Hu YD, et al (2015a). Expression patterns of melatonin receptors in chicken ovarian follicles affected by monochromatic light. Genet. Mol. Res. 14: 10072-10080. http://dx.doi.org/10.4238/2015.August.21.14 Li J, Grant GR, Hogenesch JB, Hughes ME, et al (2015b). Considerations for RNA-seq analysis of circadian rhythms. Methods Enzymol. 551: 349-367. http://dx.doi.org/10.1016/bs.mie.2014.10.020 Lowrey PL, Takahashi JS, et al (2000). Genetics of the mammalian circadian system: Photic entrainment, circadian pacemaker mechanisms, and posttranslational regulation. Annu. Rev. Genet. 34: 533-562. http://dx.doi.org/10.1146/annurev.genet.34.1.533 Pairett AN, Serb JM, et al (2013). De novo assembly and characterization of two transcriptomes reveal multiple light-mediated functions in the scallop eye (Bivalvia: Pectinidae). PLoS One 8: e69852-e69852. http://dx.doi.org/10.1371/journal.pone.0069852 Panda S, Hogenesch JB, Kay SA, et al (2002). Circadian rhythms from flies to human. Nature 417: 329-335. http://dx.doi.org/10.1038/417329a Parsons GJ, Robinson SMC, Chandler RA, Davidson LA, et al (1992). Intra-annual and long-term patterns in the reproductive cycle of giant scallops Placopecten magellanicus (Bivalvia: Pectinidae) from Passamaquoddy Bay, New Brunswick, Canada. Mar. Ecol. Prog. Ser. 80: 203-214. http://dx.doi.org/10.3354/meps080203 Schrago CG, et al (2006). An empirical examination of the standard errors of maximum likelihood phylogenetic parameters under the molecular clock via bootstrapping. Genet. Mol. Res. 5: 233-241. Shi M, Zheng X, et al (2013). Interactions between the circadian clock and metabolism: there are good times and bad times. Acta Biochim. Biophys. Sin. (Shanghai) 45: 61-69. http://dx.doi.org/10.1093/abbs/gms110 Shoguchi E, Tanaka M, Shinzato C, Kawashima T, et al (2013). A genome-wide survey of photoreceptor and circadian genes in the coral, Acropora digitifera. Gene 515: 426-431. http://dx.doi.org/10.1016/j.gene.2012.12.038 Sugama N, Park JG, Park YJ, Takeuchi Y, et al (2008). Moonlight affects nocturnal Period2 transcript levels in the pineal gland of the reef fish Siganus guttatus. J. Pineal Res. 45: 133-141. http://dx.doi.org/10.1111/j.1600-079X.2008.00566.x Sun X, Yang A, Wu B, Zhou L, et al (2015). Characterization of the mantle transcriptome of yesso scallop (Patinopecten yessoensis): identification of genes potentially involved in biomineralization and pigmentation. PLoS One 10: e0122967. http://dx.doi.org/10.1371/journal.pone.0122967 Tessmar-Raible K, Raible F, Arboleda E, et al (2011). Another place, another timer: Marine species and the rhythms of life. BioEssays 33: 165-172. http://dx.doi.org/10.1002/bies.201000096 Vize PD, et al (2009). Transcriptome analysis of the circadian regulatory network in the coral Acropora millepora. Biol. Bull. 216: 131-137. http://dx.doi.org/10.1086/BBLv216n2p131 Vize PD, Embesi JA, Nickell M, Brown DP, et al (2005). Tight temporal consistency of coral mass spawning at the Flower Garden Banks, Gulf of Mexico, from 1997-2003. Gulf Mex. Sci. 23: 107-114. Wager-Smith K, Kay SA, et al (2000). Circadian rhythm genetics: from flies to mice to humans. Nat. Genet. 26: 23-27. http://dx.doi.org/10.1038/79134 Zhang G, Fang X, Guo X, Li L, et al (2012). The oyster genome reveals stress adaptation and complexity of shell formation. Nature 490: 49-54. http://dx.doi.org/10.1038/nature11413