Publications

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2012
M. E. Ali, Hashim, U., Kashif, M., Mustafa, S., Man, Y. B. Che, and Hamid, S. B. Abd, Development of swine-specific DNA markers for biosensor-based halal authentication, vol. 11, pp. 1762-1772, 2012.
Aboud MJ, Gassmann M and McCord BR (2010). The development of mini pentameric STR loci for rapid analysis of forensic DNA samples on a microfluidic system. Electrophoresis 31: 2672-2679. http://dx.doi.org/10.1002/elps.201000032 PMid:20665925   Ali ME, Hashim U, Dhahi TS, Mustafa S, et al. (2011a). Analysis of pork adulteration in commercial burgers targeting porcine-specific mitochondrial cytochrome B gene by TaqMan probe real-time polymerase chain reaction food. Food Anal. Methods DOI: 10.1007/s12161-011-9311-4. http://dx.doi.org/10.1007/s12161-011-9311-4   Ali ME, Hashim U, Mustafa S and Che Man YB (2011b). Swine-specific PCR-RFLP assay targeting mitochondrial cytochrome B gene for semiquantitative detection of pork in commercial meat products. Food Anal. Methods 5: 613-623. http://dx.doi.org/10.1007/s12161-011-9290-5   Ali ME, Hashim U, Mustafa S, Che Man YB, et al. (2011c). Nanoparticle sensor for label free detection of swine DNA in mixed biological samples. Nanotechnology DOI: 10.1088/0957-4484/22/19/195503. http://dx.doi.org/10.1088/0957-4484/22/19/195503   Ali ME, Hashim U, Mustafa S, Che Man YB, et al. (2011d). Nanobiosensor for detection and quantification of DNA sequences in degraded mixed meats. J. Nanomater. DOI: 10.1155/2011/781098. http://dx.doi.org/10.1155/2011/781098   Ali ME, Hashim U, Mustafa S, Man YBC, et al. (2011e). Nanobiosensor for the detection and quantification of specific DNA sequences in degraded biological samples. IFMBE Proceed. 35: 384-387. http://dx.doi.org/10.1007/978-3-642-21729-6_99   Ali ME, Hashim U, Mustafa S, Che Man YB, et al. (2012). Gold nanoparticle sensor for the visual detection of pork adulteration in meatball formulation. J. Nanomater. DOI: 10.1155/2012/103607. http://dx.doi.org/10.1155/2012/103607   Bielikova M, Pangallo D and Turna J (2010). Polymerase chain reaction - restriction fragment length polymorphism (PCR-RFLP) as a molecular discrimination tool for raw and heat-treated game and domestic animal meats. J. Food Nutr. Res. 49: 134-139.   Butler JM (2005). Forensic DNA Typing-Biology, Technology and Genetics of STR markers. 2nd edn. Elsevier, New York.   Butler JM (2006). MiniSTRs: Past, Present, and Future. October 2006. Forensic News, Applied Biosystems, Foster City.   Che Man YB, Mustafa S, Khairil Mokhtar NF, Nordin R, et al. (2010). Porcine-specific polymerase chain reaction assay based on mitochondrial D-loop gene for the identification of pork in raw meat. Int. J. Food Proper. 15: 134-144. http://dx.doi.org/10.1080/10942911003754692   Doosti A, Ghasemi Dehkordi P and Rahimi E (2011). Molecular assay to fraud identification of meat products. J. Food Sci. Technol. DOI: 10.1007/s13197-011-0456-31-5.   Dubertret B, Calame M and Libchaber AJ (2001). Single-mismatch detection using gold-quenched fluorescent oligonucleotides. Nat. Biotechnol. 19: 365-370. http://dx.doi.org/10.1038/86762 PMid:11283596   Gerion D, Parak WJ, Williams SC, Zanchet D, et al. (2002). Sorting fluorescent nanocrystals with DNA. J. Am. Chem. Soc. 124: 7070-7074. http://dx.doi.org/10.1021/ja017822w PMid:12059231   Hill CR, Coble MD and Butler JM (2006). Development of 27 New MiniSTR Loci for Improved Analysis of Degraded DNA Samples. American Academy of Forensic Sciences, February 24, 2006, Poster B2105, Seattle.   Hird H, Chisholm J, Sanchez A, Hernandez M, et al. (2006). Effect of heat and pressure processing on DNA fragmentation and implications for the detection of meat using a real-time polymerase chain reaction. Food Addit. Contam. 23: 645-650. http://dx.doi.org/10.1080/02652030600603041 PMid:16751140   Kim C-H, Jung C, Lee K-B, Park HG, et al. (2011). Label-free DNA detection with a nanogap embedded complementary metal oxide semiconductor. Nanotechnology DOI: 10.1088/0957-4484/22/13/135502. http://dx.doi.org/10.1088/0957-4484/22/13/135502   Luo A, Zhang A, Ho S, Xu W, et al. (2011). Potential efficacy of mitochondrial genes for animal DNA barcoding: a case study using eutherian mammals. BMC Genomics 12: 84. http://dx.doi.org/10.1186/1471-2164-12-84 PMid:21276253 PMCid:3042414   Maxwell DJ, Taylor JR and Nie S (2002). Self-assembled nanoparticle probes for recognition and detection of biomolecules. J Am. Chem. Soc. 124: 9606-9612. http://dx.doi.org/10.1021/ja025814p PMid:12167056   Mirkin CA, Letsinger RL, Mucic RC and Storhoff JJ (1996). A DNA-based method for rationally assembling nanoparticles into macroscopic materials. Nature 382: 607-609. http://dx.doi.org/10.1038/382607a0 PMid:8757129   Mozayani A and Noziglia C (2010). The Forensic Laboratory Handbook - Procedures and Practice. Humana Press, Houston, 30-41.   Rohman A, Sismindari, Erwanto Y and Che Man YB (2011). Analysis of pork adulteration in beef meatball using Fourier transform infrared (FTIR) spectroscopy. Meat Sci. 88: 91-95. http://dx.doi.org/10.1016/j.meatsci.2010.12.007 PMid:21227596   Smith S, Vigilant L and Morin PA (2002). The effects of sequence length and oligonucleotide mismatches on 5' exonuclease assay efficiency. Nucleic Acids Res. 30: e111. http://dx.doi.org/10.1093/nar/gnf110 PMid:12384613 PMCid:137155   Srisombat LO, Park JS, Zhang S and Lee TR (2008). Preparation, characterization, and chemical stability of gold nanoparticles coated with mono-, bis-, and tris-chelating alkanethiols. Langmuir 24: 7750-7754. http://dx.doi.org/10.1021/la800511g PMid:18620437   Wu JH, Hong PY and Liu WT (2009). Quantitative effects of position and type of single mismatch on single base primer extension. J. Microbiol. Methods 77: 267-275. http://dx.doi.org/10.1016/j.mimet.2009.03.001 PMid:19285527   Yusop M, Mustafa S, Che Man Y, Omar A, et al. (2011). Detection of raw pork targeting porcine-specific mitochondrial cytochrome B gene by molecular beacon probe real-time polymerase chain reaction. Food Anal. Methods DOI: 10. 1007/s12161-011-9260-y.
M. A. Latif, Omar, M. Y., Tan, S. G., Siraj, S. S., Ali, M. E., and Rafii, M. Y., Food assimilated by two sympatric populations of the brown planthopper Nilaparvata lugens (Delphacidae) feeding on different host plants contaminates insect DNA detected by RAPD-PCR analysis, vol. 11, pp. 30-41, 2012.
Claridge MF and Den Hollander J (1982). Virulence to rice cultivars and selection for virulence in populations of the brown planthopper Nilaparvata lugens. Entom. Expert. Appl. 32: 213-221. http://dx.doi.org/10.1111/j.1570-7458.1982.tb03208.x Claridge MF, Den Hollander J and Morgan JC (1985). The status of weed associated populations of the brown planthopper, Nilaparvata lugens (Stål)-host race or biological species. Zool. J. Linn. Soc. 84: 77-90. http://dx.doi.org/10.1111/j.1096-3642.1985.tb01717.x Comeau AM, Short S and Suttle CA (2004). The use of degenerate-primed random amplification of polymorphic DNA (DP-RAPD) for strain-typing and inferring the genetic similarity among closely related viruses. J. Virol. Methods 118: 95-100. http://dx.doi.org/10.1016/j.jviromet.2004.01.020 PMid:15081604 Domingo IT, Heinrichs EA and Saxena RS (1983). Occurrences of brown planthopper on Leersia hexandra in the Philippines. Intl. Rice Newsl. 8: 17. Dyck VA and Thomas B (1979). The Brown Planthopper Problem. In: Brown Planthopper. Treat to rice production in Asia IRRI, Philippines, Los Banos, 3-17. Khan ZR and Saxena RC (1985). Behavioral and physiological responses of Sogatella furcifera (Homoptera: Delphacidae) to selected resistant and susceptible rice cultivars. J. Econ. Entom. 78: 1280-1286. Latif MA (2000). Morphological, Molecular Genetic and Host Plant Relationship Studies of Rice and Weed Infesting Populations of Brown Planthopper, Nilaparvata lugens (Stål) (Homoptera: Delphacidae). A PhD thesis Submitted in Fulfillment of the Requirements for the Degree of Doctor of Philosophy in the Faculty of Science and Environmental Studies. Universiti Putra Malaysia, 314. Latif MA, Soon GT, Mohd YO and Siraj SS (2008). Evidence of sibling species in the brown planthopper complex (Nilaparvata lugens) detected from short and long primer random amplified polymorphic DNA fingerprints. Biochem. Genet. 46: 520-537. http://dx.doi.org/10.1007/s10528-008-9167-5 PMid:18504649 Latif MA, Omar MY, Tan SG, Siraj SS, et al. (2010). Interpopulation crosses, inheritance study, and genetic variability in the brown planthopper complex, Nilaparvata lugens (Homoptera: Delphacidae). Biochem. Genet. 48: 266-286. http://dx.doi.org/10.1007/s10528-009-9316-5 PMid:19967400 Lewin R (1989). Limits to DNA fingerprinting. Science 243: 1549-1551. http://dx.doi.org/10.1126/science.2928790 PMid:2928790 Ling KC (1977). Rice ragged stunt disease. Intl. Rice Res. Newsl. 2-6. McClelland M and Welsh J (1994). DNA fingerprinting by arbitrarily primed PCR. PCR Methods Appl. 4: S59-S65. PMid:9018327 Mochida O and Okada T (1979). Taxonomy and Biology of Nilaparvata lugens (Homoptera, Delphacidae). In: Brown Planthopper; Threat to Rice Production in Asia Philippines, Los Banos, 21-44. Ocampo CB and Wesson DM (2004). Population dynamics of Aedes aegypti from a dengue hyperendemic urban setting in Colombia. Am. J. Trop. Med. Hyg. 71: 506-513. PMid:15516650 Pathak PK and Heinrichs EA (1982). Selection of biotype populations 2 and 3 of Nilaparvata lugens by exposure to resistant rice varieties. Environ. Entom. 11: 85-90. Ruano G, Brash DE and Kidd KK (1991). PCR: The first few cycles. Amplifications 7: 1-4. Sambrook J, Fritsch EF and Maniatis T (1989). Molecular Cloning: A Laboratory Manual. 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor. Saxena KN (1969). Patterns of insect-plants relationships determine susceptibility or resistance of different plants to an insect. Entomol. Exp. Appl. 12: 751-766. http://dx.doi.org/10.1111/j.1570-7458.1969.tb02569.x Saxena RC and Pathak MD (1977). Factor Affecting Resistant of Rice Varieties to the Brown Planthopper, Nilaparvat lugens. In: Proceedings of 8th Annual Conference of Pest Control Council of the Phillipines, Bacolod City, 18-20. Scott JC and McManus DP (1994). The random amplification of polymorphic DNA can discriminate species and strains of Echinococcus. Trop. Med. Parasitol. 45: 1-4. PMid:8066374 Sogawa K (1981). Biotypic variations in the brown planthopper, Nilaparvata lugens (Hemiptera: Delphacidae) at the IRRI, the Philippines. Appl. Entom. Zool. 16: 129-137. Sogawa K, Kilin D and Kusmayadi A (1984). A Leersia feeding brown planthopper (BPH) biotype in North Sumatra, Indonesia. Intl. Rice Newsl. 9: 20. Velusamy R (1988). Resistance of wild rice, Oryza spp., to the brown planthopper, Nilaparvata lugens (Stål) (Homoptera: Delphacidae). Crop Prot. 7: 403-408. http://dx.doi.org/10.1016/0261-2194(88)90010-5 Wu JT, Heinrichs EA and Medrano FG (1986). Resistance of wild rice Oryza spp. to the brown planthopper Nilaparvata lugens (Homoptera: Delphacidae). Environ. Entom. 15: 648-649. Zhi-Gang G and Alan MJ (1995) Genetic comparison of Neospora caninum with Toxoplasma and Sarcocystis by random amplified polymorphic DNA-polymerase chain reaction, Parasitol. Res. 81: 365-370. http://dx.doi.org/10.1007/BF00931495 PMid:7501633