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“Discovery of a large set of SNP and SSR genetic markers by high-throughput sequencing of pepper (Capsicum annuum)”, vol. 11. pp. 2295-2300, 2012.
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http://dx.doi.org/10.1111/j.1365-313X.2007.03193.x
PMid:17662031 PMCid:2169515
Barchi L, Bonnet J, Boudet C, Signoret P, et al. (2007). A high-resolution, intraspecific linkage map of pepper (Capsicum annuum L.) and selection of reduced recombinant inbred line subsets for fast mapping. Genome 50: 51-60.
http://dx.doi.org/10.1139/g06-140
PMid:17546071
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PMid:8890517
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http://dx.doi.org/10.1186/1471-2164-11-468
PMid:20701750 PMCid:3091664
Hyten DL, Song Q, Fickus EW, Quigley CV, et al. (2010). High-throughput SNP discovery and assay development in common bean. BMC Genomics 11: 475.
http://dx.doi.org/10.1186/1471-2164-11-475
PMid:20712881 PMCid:3091671
Kim HJ, Baek KH, Lee SW, Kim J, et al. (2008). Pepper EST database: comprehensive in silico tool for analyzing the chili pepper (Capsicum annuum) transcriptome. BMC Plant Biol. 8: 101.
http://dx.doi.org/10.1186/1471-2229-8-101
PMid:18844979 PMCid:2575210
Kofler R, Schlotterer C and Lelley T (2007). SciRoKo: a new tool for whole genome microsatellite search and investigation. Bioinformatics 23: 1683-1685.
http://dx.doi.org/10.1093/bioinformatics/btm157
PMid:17463017
Lee JM, Nahm SH, Kim YM and Kim BD (2004). Characterization and molecular genetic mapping of microsatellite loci in pepper. Theor. Appl. Genet. 108: 619-627.
http://dx.doi.org/10.1007/s00122-003-1467-x
PMid:14647898
Li H and Durbin R (2009). Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
http://dx.doi.org/10.1093/bioinformatics/btp324
PMid:19451168 PMCid:2705234
Li H, Ruan J and Durbin R (2008). Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res. 18: 1851-1858.
http://dx.doi.org/10.1101/gr.078212.108
PMid:18714091 PMCid:2577856
Li H, Handsaker B, Wysoker A, Fennell T, et al. (2009). The Sequence Alignment/Map format and SAMtools. Bioinformatics 25: 2078-2079.
http://dx.doi.org/10.1093/bioinformatics/btp352
PMid:19505943 PMCid:2723002
Minamiyama Y, Tsuro M and Hirai M (2006). An SSR-based linkage map of Capsicum annuum. Mol. Breed. 18: 157-169.
http://dx.doi.org/10.1007/s11032-006-9024-3
Novaes E, Drost DR, Farmerie WG, Pappas GJ Jr, et al. (2008). High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome. BMC Genomics 9: 312.
http://dx.doi.org/10.1186/1471-2164-9-312
PMid:18590545 PMCid:2483731
Parchman TL, Geist KS, Grahnen JA, Benkman CW, et al. (2010). Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery. BMC Genomics 11: 180.
http://dx.doi.org/10.1186/1471-2164-11-180
PMid:20233449 PMCid:2851599
Portis E, Nagy I, Sasva Z, Stagelri A, et al. (2007). The design of Capsicum spp. SSR assays via analysis of in silico DNA sequence, and their potential utility for genetic mapping. Plant Sci. 172: 640-648.
http://dx.doi.org/10.1016/j.plantsci.2006.11.016
Subramanian S, Madgula VM, George R, Kumar S, et al. (2003). SSRD: simple sequence repeats database of the human genome. Comp Funct. Genomics 4: 342-345.
http://dx.doi.org/10.1002/cfg.289
PMid:18629286 PMCid:2448451
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Wu F, Eannetta NT, Xu Y, Durrett R, et al. (2009). A COSII genetic map of the pepper genome provides a detailed picture of synteny with tomato and new insights into recent chromosome evolution in the genus Capsicum. Theor. Appl. Genet. 118: 1279-1293.
http://dx.doi.org/10.1007/s00122-009-0980-y
PMid:19229514
Wu X, Ren C, Joshi T, Vuong T, et al. (2010). SNP discovery by high-throughput sequencing in soybean. BMC Genomics 11: 469-479.
http://dx.doi.org/10.1186/1471-2164-11-469
PMid:20701770 PMCid:3091665
Yi G, Lee JM, Lee S, Choi D, et al. (2006). Exploitation of pepper EST-SSRs and an SSR-based linkage map. Theor. Appl. Genet. 114: 113-130.
http://dx.doi.org/10.1007/s00122-006-0415-y
PMid:17047912