Publications

Found 1 results
Filters: Author is R. Slabbert  [Clear All Filters]
2012
R. Slabbert, Hepple, J. - A., Rhode, C., Van der Merwe, A. E. Bester-, and Roodt-Wilding, R., New microsatellite markers for the abalone Haliotis midae developed by 454 pyrosequencing and in silico analyses, vol. 11, pp. 2769-2779, 2012.
Abdelkrim J, Robertson B, Stanton JA and Gemmell N (2009). Fast, cost-effective development of species-specific microsatellite markers by genomic sequencing. Biotechniques 46: 185-192. http://dx.doi.org/10.2144/000113084 PMid:19317661   Ahmadian A, Gharizadeh B, Gustafsson AC, Sterky F, et al. (2000). Single-nucleotide polymorphism analysis by pyrosequencing. Anal. Biochem. 280: 103-110. http://dx.doi.org/10.1006/abio.2000.4493 PMid:10805527   Ahmadian A, Ehn M and Hober S (2006). Pyrosequencing: history, biochemistry and future. Clin. Chim. Acta 363: 83-94. http://dx.doi.org/10.1016/j.cccn.2005.04.038 PMid:16165119   Allentoft M, Schuster SC, Holdaway R, Hale M, et al. (2009). Identification of microsatellites from an extinct moa species using high-throughput (454) sequence data. Biotechniques 46: 195-200. http://dx.doi.org/10.2144/000113086 PMid:19317662   Baranski M, Rourke M, Loughnan S, Austin C, et al. (2006). Isolation and characterization of 125 microsatellite DNA markers in the blacklip abalone, Haliotis rubra. Mol. Ecol. Notes 6: 740-746. http://dx.doi.org/10.1111/j.1471-8286.2006.01327.x   Bester AE, Slabbert R and D'Amato ME (2004). Isolation and characterization of microsatellite markers in the South African abalone (Haliotis midae). Mol. Ecol. Notes 4: 618-619. http://dx.doi.org/10.1111/j.1471-8286.2004.00755.x   Blanca J, Canizares J, Roig C, Ziarsolo P, et al. (2011). Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae). BMC Genomics 12: 104. http://dx.doi.org/10.1186/1471-2164-12-104 PMid:21310031 PMCid:3049757   Castoe TA, Poole AW, Gu W, Jason de Koning AP, et al. (2010). Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence. Mol. Ecol. Resour. 10: 341-347. http://dx.doi.org/10.1111/j.1755-0998.2009.02750.x PMid:21565030   Cook P and Britz PJ (1991). Perlemoen farming in South Africa. Mariculture Association of Southern Africa, Fishing Industry Research Institute, Cape Town.   DAFF (Department of Agriculture, Forestry and Fisheries) (2012). Aquaculture Annual Report 2011, South Africa.   Ellegren H (2004). Microsatellites: simple sequences with complex evolution. Nat. Rev. Genet. 5: 435-445. http://dx.doi.org/10.1038/nrg1348 PMid:15153996   Evans B, White RW and Elliott NG (2000). Characterization of microsatellite loci in the Australian Blacklip abalone (Haliotis rubra, Leach). Mol. Ecol. 9: 1183-1184. http://dx.doi.org/10.1046/j.1365-294x.2000.00954-8.x PMid:10964244   Evans B, Conod N and Elliott NG (2001). Evaluation of microsatellite primer conservation in abalone. J. Shellfish Res. 20: 1065-1070.   Farber CR and Medrano JF (2003). Putative in silico mapping of DNA sequences to livestock genome maps using SSLP flanking sequences. Anim. Genet. 34: 11-18. http://dx.doi.org/10.1046/j.1365-2052.2003.00919.x PMid:12580781   Galindo J, Grahame JW and Butlin RK (2010). An EST-based genome scan using 454 sequencing in the marine snail Littorina saxatilis. J. Evol. Biol. 23: 2004-2016. http://dx.doi.org/10.1111/j.1420-9101.2010.02071.x PMid:20695960   Gutiérrez-Gonzales JL, Cruz P, Del Rio-Portilla MA and Perez-Enriquez R (2007). Genetic structure of green abalone Haliotis fulgens population off Baja California, Mexico. J. Shellfish Res. 26: 839-846. http://dx.doi.org/10.2983/0730-8000(2007)26[839:GSOGAH]2.0.CO;2   Hall TA (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41: 95-98.   Hamilton MB, Pincus EL, Di FA and Fleischer RC (1999). Universal linker and ligation procedures for construction of genomic DNA libraries enriched for microsatellites. Biotechniques 27: 500-507. PMid:10489609   Hubert S, English LJ, Landau BJ, Guo X, et al. (2000). Microsatellite analysis of trisomic families in the Pacific oyster, Crassostrea gigas, Thunberg. J. Shellfish Res. 19: 615.   Jones AG and Ardren WR (2003). Methods of parentage analysis in natural populations. Mol. Ecol. 12: 2511-2523. http://dx.doi.org/10.1046/j.1365-294X.2003.01928.x PMid:12969458   Kalinowski ST, Taper ML and Marshall TC (2007). Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Mol. Ecol. 16: 1099-1106. http://dx.doi.org/10.1111/j.1365-294X.2007.03089.x PMid:17305863   Li Q and Akihiro K (2007). Sequence characterization of microsatellite DNA sequences in Pacific abalone (Haliotis discus hannai). J. Ocean Univ. Chin. 6: 47-52. http://dx.doi.org/10.1007/s11802-007-0047-0   Li Q, Shu J, Yu R and Tian C (2007). Genetic variability of cultured populations of the Pacific abalone (Haliotis discus hannai Ino) in China based on microsatellites. Aquac. Res. 38: 981-990. http://dx.doi.org/10.1111/j.1365-2109.2007.01764.x   Li YC, Korol AB, Fahima T and Nevo E (2004). Microsatellites within genes: structure, function, and evolution. Mol. Biol. Evol. 21: 991-1007. http://dx.doi.org/10.1093/molbev/msh073 PMid:14963101   O'Connell M and Wright JM (1997). Microsatellite DNA in fishes. Rev. Fish. Biol. 7: 331-363. http://dx.doi.org/10.1023/A:1018443912945   Rhode C and Roodt-Wilding R (2011). Bioinformatic survey of Haliotis midae microsatellites reveals a non-random distribution of repeat motifs. Biol. Bull. 221: 147-154. PMid:22042433   Ronaghi M, Uhlen M and Nyren P (1998). A sequencing method based on real-time pyrophosphate. Science 281: 363-365. http://dx.doi.org/10.1126/science.281.5375.363 PMid:9705713   Rousset F (2008). Genepop'007: a complete re-implementation of the genepop software for Windows and Linux. Mol. Ecol. Resour. 8: 103-106. http://dx.doi.org/10.1111/j.1471-8286.2007.01931.x PMid:21585727   Saghai-Maroof MA, Soliman KM, Jorgensen RA and Allard RW (1984). Ribosomal DNA spacer-length polymorphisms in barley: mendelian inheritance, chromosomal location, and population dynamics. Proc. Natl. Acad. Sci. U. S. A. 81: 8014-8018. http://dx.doi.org/10.1073/pnas.81.24.8014 PMid:6096873 PMCid:392284   Santana QC, Coetzee MPA, Steenkamp ET, Mlonyeni OX, et al. (2009). Microsatellite discovery by deep sequencing of enriched genomic libraries. Biotechniques 46: 217-223. http://dx.doi.org/10.2144/000113085 PMid:19317665   Selvamani MJP, Degnan SM, Paetkau D and Degnan BM (2000). Highly polymorphic microsatellite loci in the Heron Reef population of the tropical abalone Haliotis asinina. Mol. Ecol. 9: 1184-1186. http://dx.doi.org/10.1046/j.1365-294x.2000.00954-9.x PMid:10964245   Shendure J, Porreca GJ, Reppas NB, Lin X, et al. (2005). Accurate multiplex polony sequencing of an evolved bacterial genome. Science 309: 1728-1732. http://dx.doi.org/10.1126/science.1117389 PMid:16081699   Shi Y, Guo X, Gu Z, Wang A, et al. (2010). Preliminary genetic linkage map of the abalone Haliotis diversicolor Reeve. Chin. J. Oceanol. Limn. 28: 549-557. http://dx.doi.org/10.1007/s00343-010-9026-1   Slabbert R, Ruivo NR, Van den Berg NC, Lizamore DL, et al. (2008). Isolation and characterization of 63 microsatellite loci for the abalone, Haliotis midae. J. World Aquacult. Soc. 39: 429-435. http://dx.doi.org/10.1111/j.1749-7345.2008.00173.x   Slabbert R, Bester AE and D'Amato ME (2009a). Analyses of genetic diversity and parentage within a South African hatchery of the abalone Haliotis midae Linnaeus using microsatellite markers. J. Shellfish Res. 28: 369-375. http://dx.doi.org/10.2983/035.028.0220   Slabbert R, Roux A, Van der Merwe M, Watson L, et al. (2009b). Genetic Enhancement in the South African Abalone (Haliotis midae): Current Status. In: Book of Abstracts of the 10th International Symposium on Genetics in Aquaculture, Bangkok, 22-26.   Slabbert R, Hepple J, Venter A, Nel S, et al. (2010). Isolation and segregation of 44 microsatellite loci in the South African abalone Haliotis midae L. Anim. Genet. 41: 332-333. http://dx.doi.org/10.1111/j.1365-2052.2009.02003.x PMid:19958347   Weir BS and Cockerham CC (1984). Estimating F-statistics for the analysis of population structure. Evolution 38: 1358- 1370. http://dx.doi.org/10.2307/2408641   You FM, Huo N, Gu YQ, Luo MC, et al. (2008). BatchPrimer3: a high throughput web application for PCR and sequencing primer design. BMC Bioinformatics 9: 253. http://dx.doi.org/10.1186/1471-2105-9-253 PMid:18510760 PMCid:2438325   Zane L, Bargelloni L and Patarnello T (2002). Strategies for microsatellite isolation: a review. Mol. Ecol. 11: 1-16. http://dx.doi.org/10.1046/j.0962-1083.2001.01418.x PMid:11903900