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2012
S. M. M. Casseb, Cardoso, J. F., Ramos, R., Carneiro, A., Nunes, M., Vasconcelos, P. F. C., and Silva, A., Optimization of dengue virus genome assembling using GSFLX 454 pyrosequencing data: evaluation of assembling strategies, vol. 11, pp. 3688-3695, 2012.
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Evaluation of next generation sequencing platforms for population targeted sequencing studies. Genome Biol. 10: R32. http://dx.doi.org/10.1186/gb-2009-10-3-r32 PMid:19327155 PMCid:2691003   Hedskog C, Mild M, Jernberg J, Sherwood E, et al. (2010). Dynamics of HIV-1 quasispecies during antiviral treatment dissected using ultra-deep pyrosequencing. PLoS One 5: e11345. http://dx.doi.org/10.1371/journal.pone.0011345 PMid:20628644 PMCid:2898805   Hernandez D, Francois P, Farinelli L, Osteras M, et al. (2008). De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer. Genome Res. 18: 802-809. http://dx.doi.org/10.1101/gr.072033.107 PMid:18332092 PMCid:2336802   Miller JR, Koren S and Sutton G (2010). Assembly algorithms for next-generation sequencing data. Genomics 95: 315-327. http://dx.doi.org/10.1016/j.ygeno.2010.03.001 PMid:20211242 PMCid:2874646   Nijkamp J, Winterbach W, van den Broek M, Daran J-M, et al. (2010). Integrating genome assemblies with MAIA. Bioinformatics 26: 433-439. http://dx.doi.org/10.1093/bioinformatics/btq366 PMid:20823304 PMCid:2935414   Palacios G, Tesh R, Travassos da RA, Savji N, et al. (2011). Characterization of the Candiru antigenic complex (Bunyaviridae: Phlebovirus), a highly diverse and reassorting group of viruses affecting humans in tropical America. J. Virol. 85: 3811-3820. http://dx.doi.org/10.1128/JVI.02275-10 PMid:21289119 PMCid:3126144   Ronaghi M (2001). Pyrosequencing sheds light on DNA sequencing. Genomes Res. 11: 3-11. http://dx.doi.org/10.1101/gr.11.1.3 PMid:11156611   Sanger F, Nicklen S and Coulson AR (1977). DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. U. S. A. 74: 5463-5467. http://dx.doi.org/10.1073/pnas.74.12.5463 PMid:271968 PMCid:431765   Schinazi RF, Massud I, Rapp KL, Cristiano M, et al. (2011). Selection and characterization of HIV-1 with a novel S68 deletion in reverse transcriptase. Antimicrob. Agents Chemother. 55: 2054-2060. http://dx.doi.org/10.1128/AAC.01700-10 PMid:21357304 PMCid:3088218   Schloss PD, Westcott SL, Ryabin T, Hall JR, et al. (2009). Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75: 7537-7541. http://dx.doi.org/10.1128/AEM.01541-09 PMid:19801464 PMCid:2786419   Schuster SC (2008). Next-generation sequencing transforms today's biology. Nat. Methods 5: 16-18. http://dx.doi.org/10.1038/nmeth1156 PMid:18165802   Temporão JG, Penna GO, Carmo EH, Coelho GE, et al. (2011). Dengue virus serotype 4, Roraima State, Brazil. Emerg. Infect. Dis. 17: 938-940. http://dx.doi.org/10.3201/eid1705.101681 PMid:21529421 PMCid:3321786   Victoria JG, Kapoor A, Li L, Blinkova O, et al. (2009). Metagenomic analyses of viruses in stool samples from children with acute flaccid paralysis. J. 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