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S. M. M. Casseb, Cardoso, J. F., Ramos, R., Carneiro, A., Nunes, M., Vasconcelos, P. F. C., and Silva, A., Optimization of dengue virus genome assembling using GSFLX 454 pyrosequencing data: evaluation of assembling strategies, vol. 11, pp. 3688-3695, 2012.
Abbate I, Vlassi C, Rozera G, Bruselles A, et al. (2011). Detection of quasispecies variants predicted to use CXCR4 by ultra-deep pyrosequencing during early HIV infection. AIDS 25: 611-617. PMid:21160417   Altschul SF, Gish W, Miller W, Myers EW, et al. (1990). Basic local alignment search tool. J. Mol. Biol. 215: 403-410. PMid:2231712   Bimber BN, Dudley DM, Lauck M, Becker EA, et al. (2010). Whole-genome characterization of human and simian immunodeficiency virus intrahost diversity by ultradeep pyrosequencing. J. Virol. 84: 12087-12092. PMid:20844037 PMCid:2977871   Birney E (2011). Assemblies: the good, the bad, the ugly. Nat. Methods 8: 59-60. PMid:21191376   Bishop-Lilly KA, Turell MJ, Willner KM, Butani A, et al. (2010). Arbovirus detection in insect vectors by rapid, high-throughput pyrosequencing. PLoS Negl. Trop. Dis. 4: e878. PMid:21085471 PMCid:2976685   Carvalho SE, Martin DP, Oliveira LM, Ribeiro BM, et al. (2010). Comparative analysis of American Dengue virus type 1 full-genome sequences. Virus Genes 40: 60-66. PMid:19997970   Chevreux B, Pfisterer T, Drescher B, Driesel AJ, et al. (2004). Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs. Genome Res. 14: 1147-1159. PMid:15140833 PMCid:419793   Darling AE, Mau B and Perna NT (2010). Progressive mauve: multiple genome alignment with gene gain, loss, and rearrangement. PLoS One 5: e11147. PMid:20593022 PMCid:2892488   Day JM, Ballard LL, Duke MV, Scheffler BE, et al. (2010). Metagenomic analysis of the turkey gut RNA virus community. Virol. J. 7: 313. PMid:21073719 PMCid:2991317   de Magalhaes JP, Finch CE and Janssens G (2010). Next-generation sequencing in aging research: emerging applications, problems, pitfalls and possible solutions. Ageing Res. Rev. 9: 315-323. PMid:19900591 PMCid:2878865   De Benedictis P, De Battisti C, Dacheux L, Marciano S, et al. (2011). Lyssavirus detection and typing using pyrosequencing. J. Clin. Microbiol. 49: 1932-1938. PMid:21389152 PMCid:3122702   De Wolf H, Van Marck H, Mostmans W, Thys K, et al. (2011). HIV-1 nucleotide mixture detection in the Virco®TYPE HIV-1 genotyping assay: a comparison between Sanger sequencing and 454 pyrosequencing. J. Virol. Methods 175: 129-132. PMid:21549149   Harismendy O, Ng PC, Strausberg RL, Wang X, et al. (2009). Evaluation of next generation sequencing platforms for population targeted sequencing studies. Genome Biol. 10: R32. PMid:19327155 PMCid:2691003   Hedskog C, Mild M, Jernberg J, Sherwood E, et al. (2010). Dynamics of HIV-1 quasispecies during antiviral treatment dissected using ultra-deep pyrosequencing. PLoS One 5: e11345. PMid:20628644 PMCid:2898805   Hernandez D, Francois P, Farinelli L, Osteras M, et al. (2008). De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer. Genome Res. 18: 802-809. PMid:18332092 PMCid:2336802   Miller JR, Koren S and Sutton G (2010). Assembly algorithms for next-generation sequencing data. Genomics 95: 315-327. PMid:20211242 PMCid:2874646   Nijkamp J, Winterbach W, van den Broek M, Daran J-M, et al. (2010). Integrating genome assemblies with MAIA. Bioinformatics 26: 433-439. PMid:20823304 PMCid:2935414   Palacios G, Tesh R, Travassos da RA, Savji N, et al. (2011). Characterization of the Candiru antigenic complex (Bunyaviridae: Phlebovirus), a highly diverse and reassorting group of viruses affecting humans in tropical America. J. Virol. 85: 3811-3820. PMid:21289119 PMCid:3126144   Ronaghi M (2001). Pyrosequencing sheds light on DNA sequencing. Genomes Res. 11: 3-11. PMid:11156611   Sanger F, Nicklen S and Coulson AR (1977). DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. U. S. A. 74: 5463-5467. PMid:271968 PMCid:431765   Schinazi RF, Massud I, Rapp KL, Cristiano M, et al. (2011). Selection and characterization of HIV-1 with a novel S68 deletion in reverse transcriptase. Antimicrob. Agents Chemother. 55: 2054-2060. PMid:21357304 PMCid:3088218   Schloss PD, Westcott SL, Ryabin T, Hall JR, et al. (2009). Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75: 7537-7541. PMid:19801464 PMCid:2786419   Schuster SC (2008). Next-generation sequencing transforms today's biology. Nat. Methods 5: 16-18. PMid:18165802   Temporão JG, Penna GO, Carmo EH, Coelho GE, et al. (2011). Dengue virus serotype 4, Roraima State, Brazil. Emerg. Infect. Dis. 17: 938-940. PMid:21529421 PMCid:3321786   Victoria JG, Kapoor A, Li L, Blinkova O, et al. (2009). Metagenomic analyses of viruses in stool samples from children with acute flaccid paralysis. J. Virol. 83: 4642-4651. PMid:19211756 PMCid:2668503