Publications
Found 8 results
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, “Analysis of the genetic diversity of beach plums by simple sequence repeat markers”, vol. 14, pp. 9693-9702, 2015.
, “Association of the LMNA gene single nucleotide polymorphism rs4641 with bdilated cardiomyopathy”, vol. 14, pp. 15427-15434, 2015.
, “Isolation and expression analysis of four HD-ZIP III family genes targeted by microRNA166 in peach”, vol. 14, pp. 14151-14161, 2015.
, “Genetic diversity of Broussonetia papyrifera populations in southwest China”, vol. 13, pp. 7553-7563, 2014.
, “Genome-wide analysis of the homeodomain-leucine zipper (HD-ZIP) gene family in peach (Prunus persica)”, vol. 13, pp. 2654-2668, 2014.
, “Genome-wide analysis of the AP2/ERF superfamily in peach (Prunus persica)”, vol. 11, pp. 4789-4809, 2013.
Agarwal P, Agarwal PK, Joshi AJ, Sopory SK, et al. (2010). Overexpression of PgDREB2A transcription factor enhances abiotic stress tolerance and activates downstream stress-responsive genes. Mol. Biol. Rep. 37: 1125-1135.
http://dx.doi.org/10.1007/s11033-009-9885-8
PMid:19826914
Agarwal PK, Agarwal P, Reddy MK and Sopory SK (2006). Role of DREB transcription factors in abiotic and biotic stress tolerance in plants. Plant Cell Rep. 25: 1263-1274.
http://dx.doi.org/10.1007/s00299-006-0204-8
PMid:16858552
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http://dx.doi.org/10.1093/emboj/17.18.5484
PMid:9736626 PMCid:1170874
Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, et al. (2003). Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301: 653-657.
http://dx.doi.org/10.1126/science.1086391
PMid:12893945
Anfinsen CB (1973). Principles that govern the folding of protein chains. Science 181: 223-230.
http://dx.doi.org/10.1126/science.181.4096.223
PMid:4124164
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http://dx.doi.org/10.1073/pnas.47.9.1309
PMid:13683522 PMCid:223141
Arnold K, Bordoli L, Kopp J and Schwede T (2006). The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22: 195-201.
http://dx.doi.org/10.1093/bioinformatics/bti770
PMid:16301204
Bailey TL, Williams N, Misleh C and Li WW (2006). MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res. 34: W369-W373.
http://dx.doi.org/10.1093/nar/gkl198
PMid:16845028 PMCid:1538909
Blanc G and Wolfe KH (2004). Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution. Plant Cell 16: 1679-1691.
http://dx.doi.org/10.1105/tpc.021410
PMid:15208398 PMCid:514153
Chuck G, Meeley RB and Hake S (1998). The control of maize spikelet meristem fate by the APETALA2-like gene indeterminate spikelet1. Genes Dev. 12: 1145-1154.
http://dx.doi.org/10.1101/gad.12.8.1145
PMid:9553044 PMCid:316712
Clifton SW and Mitreva M (2009). Strategies for undertaking expressed sequence tag (EST) projects. Methods Mol. Biol. 533: 13-32.
http://dx.doi.org/10.1007/978-1-60327-136-3_2
PMid:19277564
Goff SA, Ricke D, Lan TH, Presting G, et al. (2002). A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296: 92-100.
http://dx.doi.org/10.1126/science.1068275
PMid:11935018
Guillaumot D, Lelu-Walter MA, Germot A, Meytraud F, et al. (2008). Expression patterns of LmAP2L1 and LmAP2L2 encoding two-APETALA2 domain proteins during somatic embryogenesis and germination of hybrid larch (Larix x marschlinsii). J. Plant Physiol. 165: 1003-1010.
http://dx.doi.org/10.1016/j.jplph.2007.08.009
PMid:18160178
Guo H and Ecker JR (2004). The ethylene signaling pathway: new insights. Curr. Opin. Plant Biol. 7: 40-49.
http://dx.doi.org/10.1016/j.pbi.2003.11.011
PMid:14732440
Hu LF and Liu SQ (2011). Genome-wide identification and phylogenetic analysis of the ERF gene family in cucumbers. Genet. Mol. Biol. 34: 624-633.
http://dx.doi.org/10.1590/S1415-47572011005000054
PMid:22215967 PMCid:3229118
Hu YX, Wang YX, Liu XF and Li JY (2004). Arabidopsis RAV1 is down-regulated by brassinosteroid and may act as a negative regulator during plant development. Cell Res. 14: 8-15.
http://dx.doi.org/10.1038/sj.cr.7290197
PMid:15040885
Huala E, Dickerman AW, Garcia-Hernandez M, Weems D, et al. (2001). The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. Nucleic Acids Res. 29: 102-105.
http://dx.doi.org/10.1093/nar/29.1.102
PMid:11125061 PMCid:29827
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PMid:7919989 PMCid:160514
Jung S, Staton M, Lee T, Blenda A, et al. (2008). GDR (Genome Database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data. Nucleic Acids Res. 36: D1034-D1040.
http://dx.doi.org/10.1093/nar/gkm803
PMid:17932055 PMCid:2238863
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http://dx.doi.org/10.1093/nar/27.2.470
PMid:9862967 PMCid:148202
Layne DR and Bassi D (2008). The Peach: Botany, Production and Uses. CABI, London.
http://dx.doi.org/10.1079/9781845933869.0000
Li Y, Zhu B, Xu W, Zhu H, et al. (2007). LeERF1 positively modulated ethylene triple response on etiolated seedling, plant development and fruit ripening and softening in tomato. Plant Cell Rep. 26: 1999-2008.
http://dx.doi.org/10.1007/s00299-007-0394-8
PMid:17639404
Licausi F, Giorgi FM, Zenoni S, Osti F, et al. (2010). Genomic and transcriptomic analysis of the AP2/ERF superfamily in Vitis vinifera. BMC Genomics 11: 719.
http://dx.doi.org/10.1186/1471-2164-11-719
PMid:21171999 PMCid:3022922
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http://dx.doi.org/10.1101/gad.10.23.3018
PMid:8957002
Nakano T, Suzuki K, Fujimura T and Shinshi H (2006). Genome-wide analysis of the ERF gene family in Arabidopsis and rice. Plant Physiol. 140: 411-432.
http://dx.doi.org/10.1104/pp.105.073783
PMid:16407444 PMCid:1361313
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PMid:7756828 PMCid:160773
Ren Y, Zhang Z, Liu J, Staub JE, et al. (2009). An integrated genetic and cytogenetic map of the cucumber genome. PLoS One 4: e5795.
http://dx.doi.org/10.1371/journal.pone.0005795
PMid:19495411 PMCid:2685989
Sakuma Y, Liu Q, Dubouzet JG, Abe H, et al. (2002). DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration- and cold-inducible gene expression. Biochem. Biophys. Res. Commun. 290: 998-1009.
http://dx.doi.org/10.1006/bbrc.2001.6299
PMid:11798174
Shangguan LF, Wang C, Fang JG, Li XY, et al. (2011). Isolation of effective genes with digital northern platform of NCBI Grapevine (Vitis vinifera L.) EST sequences. Sci. Agr. Sin. 44: 2748-2759.
Sharoni AM, Nuruzzaman M, Satoh K, Shimizu T, et al. (2011). Gene structures, classification and expression models of the AP2/EREBP transcription factor family in rice. Plant Cell Physiol. 52: 344-360.
http://dx.doi.org/10.1093/pcp/pcq196
PMid:21169347
Shi J, Blundell TL and Mizuguchi K (2001). FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties. J. Mol. Biol. 310: 243-257.
http://dx.doi.org/10.1006/jmbi.2001.4762
PMid:11419950
Singh M (2001). Predicting Protein Secondary and Supersecondary Structure. CRC Press LLC, Florida.
Tamura K, Dudley J, Nei M and Kumar S (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24: 1596-1599.
http://dx.doi.org/10.1093/molbev/msm092
PMid:17488738
Tournier B, Sanchez-Ballesta MT, Jones B, Pesquet E, et al. (2003). New members of the tomato ERF family show specific expression pattern and diverse DNA-binding capacity to the GCC box element. FEBS Lett. 550: 149-154.
http://dx.doi.org/10.1016/S0014-5793(03)00757-9
Velasco R, Zharkikh A, Troggio M, Cartwright DA, et al. (2007). A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. PLoS One 2: e1326.
http://dx.doi.org/10.1371/journal.pone.0001326
PMid:18094749 PMCid:2147077
Wang C, Wang H, Zhang J and Chen S (2008). A seed-specific AP2-domain transcription factor from soybean plays a certain role in regulation of seed germination. Sci. China C Life Sci. 51: 336-345.
http://dx.doi.org/10.1007/s11427-008-0044-6
PMid:18368311
Wang Y, Deng D, Bian Y, Lv Y, et al. (2010). Genome-wide analysis of primary auxin-responsive Aux/IAA gene family in maize (Zea mays L.). Mol. Biol. Rep. 37: 3991-4001.
http://dx.doi.org/10.1007/s11033-010-0058-6
PMid:20232157
Yamamoto S, Suzuki K and Shinshi H (1999). Elicitor-responsive, ethylene-independent activation of GCC box-mediated transcription that is regulated by both protein phosphorylation and dephosphorylation in cultured tobacco cells. Plant J. 20: 571-579.
http://dx.doi.org/10.1046/j.1365-313X.1999.00634.x
PMid:10652129
Yin XR, Allan AC, Chen KS and Ferguson IB (2010). Kiwifruit EIL and ERF genes involved in regulating fruit ripening. Plant Physiol. 153: 1280-1292.
http://dx.doi.org/10.1104/pp.110.157081
PMid:20457803 PMCid:2899921
Zhang GY, Chen M, Chen XP and Xu ZS (2008). Phylogeny, gene structures, and expression patterns of the ERF gene family in soybean (Glycine max L.). J. Exp. Bot. 59: 4095-4107.
http://dx.doi.org/10.1093/jxb/ern248
PMid:18832187 PMCid:2639015