Publications

Found 4 results
Filters: Author is V.Q. Balbino  [Clear All Filters]
2013
M. V. A. Batista, Freitas, A. C., and Balbino, V. Q., Entropy-based approach for selecting informative regions in the L1 gene of bovine papillomavirus for phylogenetic inference and primer design, vol. 12, pp. 400-407, 2013.
Antonsson A and Hansson BG (2002). Healthy skin of many animal species harbors papillomaviruses which are closely related to their human counterparts. J. Virol. 76: 12537-12542. http://dx.doi.org/10.1128/JVI.76.24.12537-12542.2002 PMid:12438579 PMCid:136724   Batista MV, Ferreira TA, Freitas AC and Balbino VQ (2011). An entropy-based approach for the identification of phylogenetically informative genomic regions of Papillomavirus. Infect. Genet. Evol. 11: 2026-2033. http://dx.doi.org/10.1016/j.meegid.2011.09.013 PMid:21964599   Bernard HU, Burk RD, Chen Z, van Doorslaer K, et al. (2010). Classification of papillomaviruses (PVs) based on 189 PV types and proposal of taxonomic amendments. Virology 401: 70-79. http://dx.doi.org/10.1016/j.virol.2010.02.002 PMid:20206957 PMCid:3400342   Bogaert L, Martens A, Kast WM, Van Marck E, et al. (2010). Bovine papillomavirus DNA can be detected in keratinocytes of equine sarcoid tumors. Vet. Microbiol. 146: 269-275. http://dx.doi.org/10.1016/j.vetmic.2010.05.032 PMid:21095508   Campo MS (2006). Bovine Papillomavirus: Old System, New Lessons? In: Papillomavirus Research: From Natural History to Vaccine and Beyond (Campo M, ed.). Caister Academic Press, Wymondham.   Carvalho CC, Batista MV, Silva MA, Balbino VQ, et al. (2012). Detection of bovine papillomavirus types, co-infection and a putative new BPV11 subtype in cattle. Transbound. Emerg. Dis. DOI: 10.1111/j.1865-1682.2011.01296.x. http://dx.doi.org/10.1111/j.1865-1682.2011.01296.x   Claus MP, Lunardi M, Alfieri AF, Ferracin LM, et al. (2008). Identification of unreported putative new bovine papillomavirus types in Brazilian cattle herds. Vet. Microbiol. 132: 396-401. http://dx.doi.org/10.1016/j.vetmic.2008.05.026 PMid:18617336   de Villiers EM, Fauquet C, Broker TR, Bernard HU, et al. (2004). Classification of papillomaviruses. Virology 324: 17-27. http://dx.doi.org/10.1016/j.virol.2004.03.033 PMid:15183049   Forslund O, Antonsson A, Nordin P, Stenquist B, et al. (1999). A broad range of human papillomavirus types detected with a general PCR method suitable for analysis of cutaneous tumours and normal skin. J. Gen. Virol. 80: 2437-2443. PMid:10501499   Guindon S, Dufayard JF, Lefort V, Anisimova M, et al. (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 59: 307-321. http://dx.doi.org/10.1093/sysbio/syq010 PMid:20525638   Hatama S, Nobumoto K and Kanno T (2008). Genomic and phylogenetic analysis of two novel bovine papillomaviruses, BPV-9 and BPV-10. J. Gen. Virol. 89: 158-163. http://dx.doi.org/10.1099/vir.0.83334-0 PMid:18089739   Hatama S, Ishihara R, Ueda Y, Kanno T, et al. (2011). Detection of a novel bovine papillomavirus type 11 (BPV-11) using xipapillomavirus consensus polymerase chain reaction primers. Arch. Virol. 156: 1281-1285. http://dx.doi.org/10.1007/s00705-011-0970-7 PMid:21424729   Löhr CV, Juan-Sallés C, Rosas-Rosas A, Paras GA, et al. (2005). Sarcoids in captive zebras (Equus burchellii): association with bovine papillomavirus type 1 infection. J. Zoo. Wildl. Med. 36: 74-81. http://dx.doi.org/10.1638/03-126 PMid:17315460   Lunardi M, Claus MP, Alfieri AA, Fungaro MH, et al. (2010). Phylogenetic position of an uncharacterized Brazilian strain of bovine papillomavirus in the genus Xipapillomavirus based on sequencing of the L1 open reading frame. Genet. Mol. Biol. 33: 745-749. http://dx.doi.org/10.1590/S1415-47572010005000091 PMid:21637585 PMCid:3036134   Manos MM, Ting Y, Wright DK, Lewis AJ, et al. (1989). The use of polymerase chain reaction amplification for the detection of genital human papillomaviruses. Cancer Cells 7: 209-214.   Ogawa T, Tomita Y, Okada M, Shinozaki K, et al. (2004). Broad-spectrum detection of papillomaviruses in bovine teat papillomas and healthy teat skin. J. Gen. Virol. 85: 2191-2197. http://dx.doi.org/10.1099/vir.0.80086-0 PMid:15269358   Ogawa T, Tomita Y, Okada M and Shirasawa H (2007). Complete genome and phylogenetic position of bovine papillomavirus type 7. J. Gen. Virol. 88: 1934-1938. http://dx.doi.org/10.1099/vir.0.82794-0 PMid:17554025   Page RDM (1989). COMPONENT User's Manual (Release 1.5). University of Auckland, Auckland.   Posada D (2008). jModelTest: phylogenetic model averaging. Mol. Biol. Evol. 25: 1253-1256. http://dx.doi.org/10.1093/molbev/msn083 PMid:18397919   Silvestre O, Borzacchiello G, Nava D, Iovane G, et al. (2009). Bovine papillomavirus type 1 DNA and E5 oncoprotein expression in water buffalo fibropapillomas. Vet. Pathol. 46: 636-641. http://dx.doi.org/10.1354/vp.08-VP-0222-P-FL PMid:19276046   Somvanshi R (2011). Papillomatosis in buffaloes: a less-known disease. Transbound. Emerg. Dis. 58: 327-332. http://dx.doi.org/10.1111/j.1865-1682.2011.01211.x PMid:21435195   Tamura K, Peterson D, Peterson N, Stecher G, et al. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28: 2731-2739. http://dx.doi.org/10.1093/molbev/msr121 PMid:21546353 PMCid:3203626   Tomita Y, Literak I, Ogawa T, Jin Z, et al. (2007). Complete genomes and phylogenetic positions of bovine papillomavirus type 8 and a variant type from a European bison. Virus Genes 35: 243-249. http://dx.doi.org/10.1007/s11262-006-0055-y PMid:17265141   van Dyk E, Oosthuizen MC, Bosman AM, Nel PJ, et al. (2009). Detection of bovine papillomavirus DNA in sarcoid-affected and healthy free-roaming zebra (Equus zebra) populations in South Africa. J. Virol. Methods 158: 141-151. http://dx.doi.org/10.1016/j.jviromet.2009.02.008 PMid:19428583   Wortley AH, Rudall PJ, Harris DJ and Scotland RW (2005). How much data are needed to resolve a difficult phylogeny? Case study in Lamiales. Syst. Biol. 54: 697-709. http://dx.doi.org/10.1080/10635150500221028 PMid:16195214   Zhu W, Dong J, Shimizu E, Hatama S, et al. (2012). Characterization of novel bovine papillomavirus type 12 (BPV-12) causing epithelial papilloma. Arch. Virol. 157: 85-91. http://dx.doi.org/10.1007/s00705-011-1140-7 PMid:22033594
2012
M. B. M. Oliveira, Barros, M. P. S., Silveira-Filho, V. M., Araújo-Nepomuceno, M. R., Balbino, V. Q., Leal, N. C., Almeida, A. M. P., and Leal-Balbino, T. C., Genetic diversity of Yersinia pestis in Brazil, vol. 11, pp. 3414-3424, 2012.
Achtman M, Morelli G, Zhu P, Wirth T, et al. (2004). Microevolution and history of the plague bacillus, Yersinia pestis. Proc. Natl. Acad. Sci. U. S. A. 101: 17837-17842. http://dx.doi.org/10.1073/pnas.0408026101 PMid:15598742 PMCid:535704   Adair DM, Worsham PL, Hill KK, Klevytska AM, et al. (2000). Diversity in a variable-number tandem repeat from Yersinia pestis. J. Clin. Microbiol. 38: 1516-1519. PMid:10747136 PMCid:86479   Altschul SF, Madden TL, Schaffer AA, Zhang J, et al. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402. http://dx.doi.org/10.1093/nar/25.17.3389 PMid:9254694 PMCid:146917   Aragão AI, Pinheiro KMA, Seoane ACM and Tavares C (2009). Prevalência de anticorpos contra Yersinia pestis em carnívoros domésticos nos focos pestosos, do Estado do Ceará. Rev. Soc. Bras. Med. Trop. 42: 711-715. http://dx.doi.org/10.1590/S0037-86822009000600019 PMid:20209360   Baltazard M (1968). Viagem de estudo ao Brasil para a organização de um projeto de pesquisas sobre a peste. Rev. Bras. Malariol. Doenças Trop. 20: 335-366. PMid:5753503   Baltazard M (2004). Recherches sur la Peste au Brésil. 4e Rapport (Mai 1970) - Progress Report. Bull. Soc. Pathol. Exot. 97 (Suppl): 93-117.   Benson G (1999). Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27: 573-580. http://dx.doi.org/10.1093/nar/27.2.573 PMid:9862982 PMCid:148217   de Almeida AM, Brasil DP, de Carvalho FG and de Almeida CR (1985). Isolation of Yersinia pestis in plague foci in northeast Brazil from 1966 to 1982. Rev. Inst. Med. Trop. Sao Paulo 27: 207-218. PMid:3832341   de Almeida AM, Brasil DP, Leal NC, de Melo ME, et al. (1989). Bacteriologic and serologic studies of an outbreak of plague in the State of Paraiba, Brazil. Mem. Inst. Oswaldo Cruz 84: 249-256. PMid:2635752   Duplantier J, Duchemin J, Chanteau S and Carniel E (2005). From the recent lessons of the Malagasy foci towards a global understanding of the factors involved in plague reemergence. Vet. Res. 36: 437-453. http://dx.doi.org/10.1051/vetres:2005007 PMid:15845233   Gage KL and Kosoy MY (2005). Natural history of plague: perspectives from more than a century of research. Annu. Rev. Entomol. 50: 505-528. http://dx.doi.org/10.1146/annurev.ento.50.071803.130337 PMid:15471529   Giles J, Peterson AT and Almeida A (2011). Ecology and geography of plague transmission areas in northeastern Brazil. PLoS Negl. Trop. Dis. 5: e925. http://dx.doi.org/10.1371/journal.pntd.0000925 PMid:21245925 PMCid:3014986   Girard JM, Wagner DM, Vogler AJ, Keys C, et al. (2004). Differential plague-transmission dynamics determine Yersinia pestis population genetic structure on local, regional, and global scales. Proc. Natl. Acad. Sci. U. S. A. 101: 8408- 8413. http://dx.doi.org/10.1073/pnas.0401561101 PMid:15173603 PMCid:420407   Hall TA (1999). Bioedit a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids Symp. Ser. 41: 95-98.   Hunter PR and Gaston MA (1988). Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J. Clin. Microbiol. 26: 2465-2466. PMid:3069867 PMCid:266921   Karimi Y (1978). Rapid laboratory diagnosis of plague. Bull. Soc. Pathol. Exot. Filiales 71: 45-48.   Keim P, Price LB, Klevytska AM, Smith KL, et al. (2000). Multiple-locus variable-number tandem repeat analysis reveals genetic relationships within Bacillus anthracis. J. Bacteriol. 182: 2928-2936. http://dx.doi.org/10.1128/JB.182.10.2928-2936.2000 PMid:10781564 PMCid:102004   Klevytska AM, Price LB, Schupp JM, Worsham PL, et al. (2001). Identification and characterization of variable-number tandem repeats in the Yersinia pestis genome. J. Clin. Microbiol. 39: 3179-3185. http://dx.doi.org/10.1128/JCM.39.9.3179-3185.2001 PMid:11526147 PMCid:88315   Le Flèche P, Hauck Y, Onteniente L, Prieur A, et al. (2001). A tandem repeats database for bacterial genomes: application to the genotyping of Yersinia pestis and Bacillus anthracis. BMC Microbiol. 1: 2. http://dx.doi.org/10.1186/1471-2180-1-2 PMid:11299044 PMCid:31411   Leal-Balbino TC, Leal NC, Lopes CV and Almeida AM (2004). Differences in the stability of the plasmids of Yersinia pestis cultures in vitro: impact on virulence. Mem. Inst. Oswaldo Cruz. 99: 727-732. http://dx.doi.org/10.1590/S0074-02762004000700011 PMid:15654429   Leal-Balbino TC, Leal NC, Nascimento MGM and Oliveira MBM (2006). The pgm locus and pigmentation phenotype in Yersinia pestis. Genet. Mol. Biol. 29: 126-131. http://dx.doi.org/10.1590/S1415-47572006000100024   Leal NC and Almeida AM (1999). Diagnosis of plague and identification of virulence markers in Yersinia pestis by multiplex-PCR. Rev. Inst. Med. Trop. Sao Paulo 41: 339-342. http://dx.doi.org/10.1590/S0036-46651999000600002 PMid:10671286   Leal NC, Sobreira M, Leal TCA and Almeida AMP (2000). Homology among extra-cryptic DNA bands and the typical plasmids in Brazilian Yersinia pestis. Braz. J. Microbiol. 31: 20-24. http://dx.doi.org/10.1590/S1517-83822000000100006   Li Y, Cui Y, Hauck Y and Platonov ME (2009). Genotyping and phylogenetic analysis of Yersinia pestis by MLVA: insights into the worldwide expansion of Central Asia plague foci. PLoS One 22: e6000. http://dx.doi.org/10.1371/journal.pone.0006000 PMid:19543392 PMCid:2694983   Lowell JL, Wagner DM, Atshabar B, Antolin MF, et al. (2005). Identifying sources of human exposure to plague. J. Clin. Microbiol. 43: 650-656. http://dx.doi.org/10.1128/JCM.43.2.650-656.2005 PMid:15695659 PMCid:548095   Pollitzer R (1954). History and present distribution of plague in: plague. Monogr. Ser. World Health Organ 22: 11-45.   Pourcel C, Andre-Mazeaud F, Neubauer H, Ramisse F, et al. (2004). Tandem repeats analysis for the high resolution phylogenetic analysis of Yersinia pestis. BMC Microbiol. 4: 22. http://dx.doi.org/10.1186/1471-2180-4-22 PMid:15186506 PMCid:436057   Rasmussen SW (2002). SEQtools, A Software Package for Analysis of Nucleotide and Protein Sequences. Available at [http://www.seqtools.dk]. Accessed October 2, 2006.   Revazishvili T, Rajanna C, Bakanidze L, Tsertsvadze N, et al. (2008). Characterisation of Yersinia pestis isolates from natural foci of plague in the Republic of Georgia, and their relationship to Y. pestis isolates from other countries. Clin. Microbiol. Infect. 14: 429-436. http://dx.doi.org/10.1111/j.1469-0691.2008.01953.x PMid:18294239   Rocha SS, Almeida AMP, Leal NC and Cordeiro MT (2009). Biological collections from Aggeu Magalhães Research Center, Oswaldo Cruz Foundation: analysis of a workshop. Rev. Patol. Trop. 38: 299-309.   Souza G, Abath F, Leal N and Farias A (2007). Development and Evaluation of a Single Tube Nested PCR Based Approach (STNPCR) for the Diagnosis of Plague. In: The Genus Yersinia: From Genomics to Function (Perry RD and Fetherston JD, eds.). Springer, New York, 351-359. http://dx.doi.org/10.1007/978-0-387-72124-8_32   Stenseth NC, Atshabar BB, Begon M and Belmain SR (2008). Plague: past, present and future. PLoS Med. 5: e3. http://dx.doi.org/10.1371/journal.pmed.0050003 PMid:18198939 PMCid:2194748   Tamura K, Peterson D, Peterson N, Stecher G, et al. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28: 2731-2739. http://dx.doi.org/10.1093/molbev/msr121 PMid:21546353 PMCid:3203626   Vogler AJ, Chan F, Wagner DM, Roumagnac P, et al. (2011). Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar. PLoS Negl. Trop. Dis. 5: e1319. http://dx.doi.org/10.1371/journal.pntd.0001319 PMid:21931876 PMCid:3172189   WHO (1965). Plague in the Americas. World Health Organ. Scient. Publ. 115: 44-68.   WHO (2006). International meeting on prevention and controlling plague: the old calamity still has a future. Wkly. Epidemiol. Rec. 80: 278-284.   WHO (2009). Human plague: review of regional morbidity and mortality, 2004-2009. Wkly. Epidemiol. Rec. 85: 40-45. PMid:20151494