Publications
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“Sequence characterization and phylogenetic analysis of toll-like receptor (TLR) 4 gene in the Tibetan macaque (Macaca thibetana)”, vol. 14, pp. 1875-1886, 2015.
, “Uneven evolutionary rate of the melatonin-related receptor gene (GPR50) in primates”, vol. 14, pp. 680-690, 2015.
, “Evolutionary analysis of the short-type peptidoglycan-recognition protein gene (PGLYRP1) in primates”, vol. 12, pp. 453-462, 2013.
, Dimopoulos G, Christophides GK, Meister S, Schultz J, et al. (2002). Genome expression analysis of Anopheles gambiae: responses to injury, bacterial challenge, and malaria infection. Proc. Natl. Acad. Sci. U. S. A. 99: 8814-8819.
http://dx.doi.org/10.1073/pnas.092274999
PMid:12077297 PMCid:124381
Dziarski R (2003). Recognition of bacterial peptidoglycan by the innate immune system. Cell Mol. Life Sci. 60: 1793-1804.
http://dx.doi.org/10.1007/s00018-003-3019-6
PMid:14523544
Dziarski R (2004). Peptidoglycan recognition proteins (PGRPs). Mol. Immunol. 40: 877-886.
http://dx.doi.org/10.1016/j.molimm.2003.10.011
PMid:14698226
Fornhem C, Peterson CG and Alving K (1996). Isolation and characterization of porcine cationic eosinophil granule proteins. Int. Arch. Allergy Immunol. 110: 132-142.
http://dx.doi.org/10.1159/000237277
PMid:8645990
Garver LS, Wu J and Wu LP (2006). The peptidoglycan recognition protein PGRP-SC1a is essential for Toll signaling and phagocytosis of Staphylococcus aureus in Drosophila. Proc. Natl. Acad. Sci. U. S. A. 103: 660-665.
http://dx.doi.org/10.1073/pnas.0506182103
PMid:16407137 PMCid:1334640
Gelius E, Persson C, Karlsson J and Steiner H (2003). A mammalian peptidoglycan recognition protein with N-acetylmuramoyl-L-alanine amidase activity. Biochem. Biophys. Res. Commun. 306: 988-994.
http://dx.doi.org/10.1016/S0006-291X(03)01096-9
Ghosh A, Lee S, Dziarski R and Chakravarti S (2009). A novel antimicrobial peptidoglycan recognition protein in the cornea. Invest. Ophthalmol. Vis. Sci. 50: 4185-4191.
http://dx.doi.org/10.1167/iovs.08-3040
PMid:19387073 PMCid:3052780
Girardin SE and Philpott DJ (2004). Mini-review: the role of peptidoglycan recognition in innate immunity. Eur. J. Immunol. 34: 1777-1782.
http://dx.doi.org/10.1002/eji.200425095
PMid:15214025
Goodman M, Porter CA, Czelusniak J, Page SL, et al. (1998). Toward a phylogenetic classification of Primates based on DNA evidence complemented by fossil evidence. Mol. Phylogenet. Evol. 9: 585-598.
http://dx.doi.org/10.1006/mpev.1998.0495
PMid:9668008
Guan R, Malchiodi EL, Wang Q, Schuck P, et al. (2004). Crystal structure of the C-terminal peptidoglycan-binding domain of human peptidoglycan recognition protein Iα. J. Biol. Chem. 279: 31873-31882.
http://dx.doi.org/10.1074/jbc.M404920200
PMid:15140887
Guan R, Wang Q, Sundberg EJ and Mariuzza RA (2005). Crystal structure of human peptidoglycan recognition protein S (PGRP-S) at 1.70 Å resolution. J. Mol. Biol. 347: 683-691.
http://dx.doi.org/10.1016/j.jmb.2005.01.070
PMid:15769462
Hasegawa M, Kishino H and Yano T (1985). Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22: 160-174.
http://dx.doi.org/10.1007/BF02101694
PMid:3934395
Hoffmann JA and Reichhart JM (2002). Drosophila innate immunity: an evolutionary perspective. Nat. Immunol. 3: 121-126.
http://dx.doi.org/10.1038/ni0202-121
PMid:11812988
Janeway CA Jr and Medzhitov R (2002). Innate immune recognition. Annu. Rev. Immunol. 20: 197-216.
http://dx.doi.org/10.1146/annurev.immunol.20.083001.084359
PMid:11861602
Kaneko T, Golenbock D and Silverman N (2005). Peptidoglycan recognition by the Drosophila Imd pathway. J. Endotoxin. Res. 11: 383-389.
PMid:16303095
Kang D, Liu G, Lundstrom A, Gelius E, et al. (1998). A peptidoglycan recognition protein in innate immunity conserved from insects to humans. Proc. Natl. Acad. Sci. U. S. A. 95: 10078-10082.
http://dx.doi.org/10.1073/pnas.95.17.10078
PMid:9707603 PMCid:21464
Kashyap DR, Wang M, Liu LH, Boons GJ, et al. (2011). Peptidoglycan recognition proteins kill bacteria by activating protein-sensing two-component systems. Nat. Med. 17: 676-683.
http://dx.doi.org/10.1038/nm.2357
PMid:21602801 PMCid:3176504
Lackner AA and Veazey RS (2007). Current concepts in AIDS pathogenesis: insights from the SIV/macaque model. Annu.Rev. Med. 58: 461-476.
http://dx.doi.org/10.1146/annurev.med.58.082405.094316
PMid:17217334
Liu C, Xu Z, Gupta D and Dziarski R (2001). Peptidoglycan recognition proteins: a novel family of four human innate immunity pattern recognition molecules. J. Biol. Chem. 276: 34686-34694.
http://dx.doi.org/10.1074/jbc.M105566200
PMid:11461926
McCarthy C (1998). Chromas 1.45. School of Health Science. Griffith University, Southport, Queensland.
Mellroth P and Steiner H (2006). PGRP-SB1: an N-acetylmuramoyl L-alanine amidase with antibacterial activity. Biochem. Biophys. Res. Commun. 350: 994-999.
http://dx.doi.org/10.1016/j.bbrc.2006.09.139
PMid:17046713
Rehman A, Taishi P, Fang J, Majde JA, et al. (2001). The cloning of a rat peptidoglycan recognition protein (PGRP) and its induction in brain by sleep deprivation. Cytokine 13: 8-17.
http://dx.doi.org/10.1006/cyto.2000.0800
PMid:11145837
Schleifer KH and Kandler O (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol. Rev. 36: 407-477.
PMid:4568761 PMCid:408328
Seggewiss R, Lore K, Guenaga FJ, Pittaluga S, et al. (2007). Keratinocyte growth factor augments immune reconstitution after autologous hematopoietic progenitor cell transplantation in rhesus macaques. Blood 110: 441-449.
http://dx.doi.org/10.1182/blood-2006-12-065623
PMid:17374737 PMCid:1975851
Sharma P, Singh N, Sinha M, Sharma S, et al. (2008). Crystal structure of the peptidoglycan recognition protein at 1.8 Å resolution reveals dual strategy to combat infection through two independent functional homodimers. J. Mol. Biol. 378: 923-932.
http://dx.doi.org/10.1016/j.jmb.2008.03.018
PMid:18395744
Shi J, Xi H, Wang Y, Zhang C, et al. (2003). Divergence of the genes on human chromosome 21 between human and other hominoids and variation of substitution rates among transcription units. Proc. Natl. Acad. Sci. U. S. A. 100: 8331-8336.
http://dx.doi.org/10.1073/pnas.1332748100
PMid:12826612 PMCid:166229
Takeda K and Akira S (2005). Toll-like receptors in innate immunity. Int. Immunol. 17: 1-14.
http://dx.doi.org/10.1093/intimm/dxh186
PMid:15585605
Tamura K, Peterson D, Peterson N, Stecher G, et al. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28: 2731-2739.
http://dx.doi.org/10.1093/molbev/msr121
PMid:21546353 PMCid:3203626
Tydell CC, Yount N, Tran D, Yuan J, et al. (2002). Isolation, characterization, and antimicrobial properties of bovine oligosaccharide-binding protein. A microbicidal granule protein of eosinophils and neutrophils. J. Biol. Chem. 277: 19658-19664.
http://dx.doi.org/10.1074/jbc.M200659200
PMid:11880375
Tydell CC, Yuan J, Tran P and Selsted ME (2006). Bovine peptidoglycan recognition protein-S: antimicrobial activity, localization, secretion, and binding properties. J. Immunol. 176: 1154-1162.
PMid:16394004
Wang ZM, Li X, Cocklin RR, Wang M, et al. (2003). Human peptidoglycan recognition protein-L is an N-acetylmuramoyl- L-alanine amidase. J. Biol. Chem. 278: 49044-49052.
http://dx.doi.org/10.1074/jbc.M307758200
PMid:14506276
Werner T, Liu G, Kang D, Ekengren S, et al. (2000). A family of peptidoglycan recognition proteins in the fruit fly Drosophila melanogaster. Proc. Natl. Acad. Sci. U. S. A. 97: 13772-13777.
http://dx.doi.org/10.1073/pnas.97.25.13772
PMid:11106397 PMCid:17651
Wooding S (2011). Signatures of natural selection in a primate bitter taste receptor. J. Mol. Evol. 73: 257-265.
http://dx.doi.org/10.1007/s00239-011-9481-0
PMid:22218679
Xu HL and Su B (2005). Genetic evidence of a strong functional constraint of neurotrypsin during primate evolution. Cytogenet. Genome Res. 108: 303-309.
http://dx.doi.org/10.1159/000081523
PMid:15627749
Yang Z (2007). PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24: 1586-1591.
http://dx.doi.org/10.1093/molbev/msm088
PMid:17483113
Yoshida H, Kinoshita K and Ashida M (1996). Purification of a peptidoglycan recognition protein from hemolymph of the silkworm, Bombyx mori. J. Biol. Chem. 271: 13854-13860.
http://dx.doi.org/10.1074/jbc.271.23.13854
PMid:8662762
Zhang YW, Ryder OA and Zhang YP (1999). Sequence evolution of the CCR5 chemokine receptor gene in primates. Mol. Biol. Evol. 16: 1145-1154.
http://dx.doi.org/10.1093/oxfordjournals.molbev.a026205
PMid:10486970