Publications

Bhattramakki D and Rafalski A (2001). Discovery and Application of Single Nucleotide Polymorphism Markers in Plants. In: Plant Genotyping: The DNA Fingerprinting of Plants (Henry RJ, ed.). CABI Publishing, Oxon, 179-191. http://dx.doi.org/10.1079/9780851995151.0179   Bhattramakki D, Dolan M, Hanafey M, Wineland R, et al. (2002). Insertion-deletion polymorphisms in 3' regions of maize genes occur frequently and can be used as highly informative genetic markers. Plant Mol. Biol. 48: 539-547. http://dx.doi.org/10.1023/A:1014841612043 PMid:12004893   Brookes AJ (1999). The essence of SNPs. Gene 234: 177-186. http://dx.doi.org/10.1016/S0378-1119(99)00219-X   Cargill M, Altshuler D, Ireland J, Sklar P, et al. (1999). Characterization of single-nucleotide polymorphisms in coding regions of human genes. Nat. Genet. 22: 231-238. http://dx.doi.org/10.1038/10290 PMid:10391209   Cho RJ, Mindrinos M, Richards DR, Sapolsky RJ, et al. (1999). Genome-wide mapping with biallelic markers in Arabidopsis thaliana. Nat. Genet. 23: 203-207. http://dx.doi.org/10.1038/13833 PMid:10508518   Gupta PK, Roy JK and Prasad M (2001). Single nucleotide polymorphism: A new paradigm for molecular marker technology and DNA polymorphism detection with emphasis on their use in plants. Curr. Sci. 80: 524-535.   Hoskins RA, Phan AC, Naeemuddin M, Mapa FA, et al. (2001). Single nucleotide polymorphism markers for genetic mapping in Drosophila melanogaster. Genome Res. 11: 1100-1113. http://dx.doi.org/10.1101/gr.GR-1780R PMid:11381036 PMCid:311062   Jander G, Norris SR, Rounsley SD, Bush DF, et al. (2002). Arabidopsis map-based cloning in the post-genome era. Plant Physiol. 129: 440-450. http://dx.doi.org/10.1104/pp.003533 PMid:12068090 PMCid:1540230   Khlestkina EK and Salina EA (2006). SNP markers: methods of analysis, ways of development, and comparison on an example of common wheat. Genetika 42: 725-736. PMid:16871776   Marth GT, Korf I, Yandell MD, Yeh RT, et al. (1999). A general approach to single-nucleotide polymorphism discovery. Nat. Genet. 23: 452-456. http://dx.doi.org/10.1038/70570 PMid:10581034   Picoult-Newberg L, Ideker TE, Pohl MG, Taylor SL, et al. (1999). Mining SNPs from EST databases. Genome Res. 9: 167-174. PMid:10022981 PMCid:310719   Primmer CR, Borge T, Lindell J and Saetre GP (2002). Single-nucleotide polymorphism characterization in species with limited available sequence information: high nucleotide diversity revealed in the avian genome. Mol. Ecol. 11: 603-612. http://dx.doi.org/10.1046/j.0962-1083.2001.01452.x PMid:11918793   Rafalski A (2002). Applications of single nucleotide polymorphisms in crop genetics. Curr. Opin. Plant Biol. 5: 94-100. http://dx.doi.org/10.1016/S1369-5266(02)00240-6   Rozen S and Skaletsky H (2000). Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 132: 365-386. PMid:10547847   Saghai-Maroof MA, Soliman KM, Jorgensen RA and Allard RW (1984). Ribosomal DNA spacer-length polymorphisms in barley: mendelian inheritance, chromosomal location, and population dynamics. Proc. Natl. Acad. Sci. U. S. A. 81: 8014-8018. http://dx.doi.org/10.1073/pnas.81.24.8014 PMid:6096873 PMCid:392284   Salmaso M, Faes G, Segala C, Stefanini M, et al. (2004). Genome diversity and gene haplotypes in the grapevine (Vitis vinifera L.), as revealed by single nucleotide polymorphisms. Mol. Breed. 14: 385-395. http://dx.doi.org/10.1007/s11032-004-0261-z   Shamay A, Fang J, Pollak N, Yonash N, et al. (2006). Discovery of c-SNPs in Anemone coronaria and assessment of genetic variation. Genet. Resour. Crop Evol. 53: 821-829. http://dx.doi.org/10.1007/s10722-004-6377-5   Stoneking M (2001). Single nucleotide polymorphisms. From the evolutionary past. Nature 409: 821-822. http://dx.doi.org/10.1038/35057279 PMid:11236996   Twito T, Weigend S, Blum S, Granevitze Z, et al. (2007). Biodiversity of 20 chicken breeds assessed by SNPs located in gene regions. Cytogenet. Genome Res. 117: 319-326. http://dx.doi.org/10.1159/000103194 PMid:17675874   Vignal A, Milan D, SanCristobal M and Eggen A (2002). A review on SNP and other types of molecular markers and their use in animal genetics. Genet. Sel. Evol. 34: 275-305. http://dx.doi.org/10.1186/1297-9686-34-3-275 PMid:12081799 PMCid:2705447   Wang DG, Fan JB, Siao CJ, Berno A, et al. (1998). Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome. Science 280: 1077-1082. http://dx.doi.org/10.1126/science.280.5366.1077 PMid:9582121   Wolters P, Powell W, Lagudah E, Snape J, et al (2000). Nucleotide Diversity at Homologous Loci in Wheat. In: Plant and Animal Genome VIII Conference, San Diego, 9-12.   Xiong M and Jin L (1999). Comparison of the power and accuracy of biallelic and microsatellite markers in population-based gene-mapping methods. Am. J. Hum. Genet. 64: 629-640. http://dx.doi.org/10.1086/302231 PMid:9973302 PMCid:1377774   Yang W, Bai X, Kabelka E, Eaton C, et al. (2004). Discovery of single nucleotide polymorphisms in Lycopersicon esculentum by computer aided analysis of expressed sequence tags. Mol. Breed. 14: 21-34. http://dx.doi.org/10.1023/B:MOLB.0000037992.03731.a5