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J. Wang, Wang, C., Gao, Y., Lan, X. - Y., Lei, C. - Z., Wang, J. - Q., and Chen, H., Impacts of single nucleotide polymorphisms and haplotypes in the bovine Dapper1 gene on body weight, vol. 12, pp. 1254-1268, 2013.
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A "silent" polymorphism in the MDR1 gene changes substrate specificity. Science 315: 525-528. PMid:17185560   Komar AA (2007). Silent SNPs: impact on gene function and phenotype. Pharmacogenomics 8: 1075-1080. PMid:17716239   Kweekel DM, Antonini NF, Nortier JW, Punt CJ, et al. (2009). Explorative study to identify novel candidate genes related to oxaliplatin efficacy and toxicity using a DNA repair array. Br. J. Cancer 101: 357-362. PMid:19536092 PMCid:2720215   Lango H, Palmer CN, Morris AD, Zeggini E, et al. (2008). Assessing the combined impact of 18 common genetic variants of modest effect sizes on type 2 diabetes risk. Diabetes 57: 3129-3135. PMid:18591388 PMCid:2570411   Marty A, Amigues Y, Servin B, Renand G, et al. (2010). Genetic variability and linkage disequilibrium patterns in the bovine DNAJA1 gene. Mol. Biotechnol. 44: 190-197. PMid:20012712   Mullenbach R, Lagoda PJ and Welter C (1989). An efficient salt-chloroform extraction of DNA from blood and tissues. Trends Genet. 5: 391. PMid:2623762   Nei M and Roychoudhury AK (1974). Sampling variances of heterozygosity and genetic distance. Genetics 76: 379-390. PMid:4822472 PMCid:1213072   Sham P, Bader JS, Craig I, O'Donovan M, et al. (2002). DNA Pooling: a tool for large-scale association studies. Nat. Rev. Genet. 3: 862-871. PMid:12415316   Stephens M, Smith NJ and Donnelly P (2001). A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet. 68: 978-989. PMid:11254454 PMCid:1275651   Su Y, Zhang L, Gao X, Meng F, et al. (2007). The evolutionally conserved activity of Dapper2 in antagonizing TGF-beta signaling. FASEB J. 21: 682-690. PMid:17197390   Tee JM, van Rooijen C, Boonen R and Zivkovic D (2009). Regulation of slow and fast muscle myofibrillogenesis by Wnt/ beta-catenin and myostatin signaling. PLoS One 4: e5880. PMid:19517013 PMCid:2690692   Wang J, Li ZJ, Lan XY, Hua LS, et al. (2010). Two novel SNPs in the coding region of the bovine PRDM16 gene and its associations with growth traits. Mol. Biol. Rep. 37: 571-577. PMid:19760096   Waxman JS, Hocking AM, Stoick CL and Moon RT (2004). Zebrafish Dapper1 and Dapper2 play distinct roles in Wnt-mediated developmental processes. Development 131: 5909-5921. PMid:15539487   Xu N, Chen CY and Shyu AB (1997). Modulation of the fate of cytoplasmic mRNA by AU-rich elements: key sequence features controlling mRNA deadenylation and decay. Mol. Cell Biol. 17: 4611-4621. PMid:9234718 PMCid:232314   Xu N, Loflin P, Chen CY and Shyu AB (1998). A broader role for AU-rich element-mediated mRNA turnover revealed by a new transcriptional pulse strategy. Nucleic Acids Res. 26: 558-565. PMid:9421516 PMCid:147286   Xu Y, Liu J, Lan X, Zhang Y, et al. (2011). Consistent effects of single and combined SNP(s) within bovine paired box 7 gene (Pax7) on growth traits. J. Genet. 90: e53-e57. PMid:21873775   Zhang L, Gao X, Wen J, Ning Y, et al. (2006). Dapper 1 antagonizes Wnt signaling by promoting dishevelled degradation. J. Biol. Chem. 281: 8607-8612. PMid:16446366   Zhao H, Nettleton D and Dekkers JCM (2007). Evaluation of linkage disequilibrium measures between multi-allelic markers as predictors of linkage disequilibrium between single nucleotide polymorphisms. Genet. Res. 89: 1-6. PMid:17517154
J. Wang, Wang, C., Tian, R., Huang, Y. - Z., Lai, X. - S., Lan, X. - Y., Wang, J. - Q., and Chen, H., Sequence variants in the bovine PRDM16 gene associated with body weight in Chinese cattle breeds, vol. 11, pp. 746-755, 2012.
Chen H and Leibenguth F (1995). Studies on multilocus fingerprints, RAPD markers, and mitochondrial DNA of a gynogenetic fish (Carassius auratus gibelio). Biochem. Genet. 33: 297-306. PMid:8748455 Chen DX, Jin QJ, Fang XT, Zhang CL, et al. (2010). Analysis of the polymorphisms in the caprine PRDM16, SHH and SF-1 genes and their association with production traits in goats. Small Ruminant Res. 93: 193-197. Cousin B, Cinti S, Morroni M, Raimbault S, et al. (1992). Occurrence of brown adipocytes in rat white adipose tissue: molecular and morphological characterization. J. Cell Sci. 10: 931-942. Farmer SR (2008). Molecular determinants of brown adipocyte formation and function. Genes Dev. 22: 1269-1275. Jenuwein T (2001). Re-SET-ting heterochromatin by histone methyltransferases. Trends Cell Biol. 11: 266-273. Kajimura S, Seale P, Tomaru T, Erdjument-Bromage H, et al. (2008). Regulation of the brown and white fat gene programs through a PRDM16/CtBP transcriptional complex. Genes Dev. 22: 1397-1409. Kimchi-Sarfaty C, Oh JM, Kim IW, Sauna ZE, et al. (2007). A “silent” polymorphism in the MDR1 gene changes substrate specificity. Science 315: 525-528. PMid:17185560 Kinameri E, Inoue T, Aruga J, Imayoshi I, et al. (2008). Prdm proto-oncogene transcription factor family expression and interaction with the Notch-Hes pathway in mouse neurogenesis. PLoS One 3: e3859. PMid:19050759    PMCid:2585159 Komar AA (2007). Silent SNPs: impact on gene function and phenotype. Pharmacogenomics 8: 1075-1080. PMid:17716239 Lai X, Lan X, Chen H, Wang X, et al. (2009). A novel SNP of the Hesx1 gene in bovine and its associations with average daily gain. Mol. Biol. Rep. 36: 1677-1681. PMid:18853282 Lan XY, Pan CY, Chen H and Zhang CL (2007). An AluI PCR-RFLP detecting a silent allele at the goat POU1F1 locus and its association with production traits. Small Ruminant Res. 73: 8-12. Nedergaard J, Bengtsson T and Cannon B (2007). Unexpected evidence for active brown adipose tissue in adult humans. Am. J. Physiol. Endocrinol. Metab. 293: E444-E452. PMid:17473055 Nei M and Roychoudhury AK (1974). Sampling variances of heterozygosity and genetic distance. Genetics 76: 379-390. PMid:4822472    PMCid:1213072 Oh I, Shimizu H, Satoh T, Okada S, et al. (2006). Identification of nesfatin-1 as a satiety molecule in the hypothalamus. Nature 443: 709-712. PMid:17036007 Ren G, Chen H, Zhang LZ, Lan XY, et al. (2010). A coding SNP of LHX4 gene is associated with body weight and body length in bovine. Mol. Biol. Rep. 37: 417-422. PMid:19283511 Rhee EJ, Oh KW, Lee WY, Kim SY, et al. (2006). Effects of two common polymorphisms of peroxisome proliferator-activated receptor-gamma gene on metabolic syndrome. Arch. Med. Res. 37: 86-94. PMid:16314192 Rosado EL, Bressan J, Martins MF, Cecon PR, et al. (2007). Polymorphism in the PPARgamma2 and beta2-adrenergic genes and diet lipid effects on body composition, energy expenditure and eating behavior of obese women. Appetite 49: 635-643. PMid:17658197 Sauna ZE, Kimchi-Sarfaty C, Ambudkar SV and Gottesman MM (2007). Silent polymorphisms speak: how they affect pharmacogenomics and the treatment of cancer. Cancer Res. 67: 9609-9612. PMid:17942888 Seale P, Kajimura S, Yang W, Chin S, et al. (2007). Transcriptional control of brown fat determination by PRDM16. Cell Metab. 6: 38-54. PMid:17618855    PMCid:2564846 Seale P, Bjork B, Yang W, Kajimura S, et al. (2008). PRDM16 controls a brown fat/skeletal muscle switch. Nature 454: 961-967. PMid:18719582    PMCid:2583329 Walczak R, Tontonoz P and Edward AD (2003). PPAR[gamma] Signaling in Adipose Tissue Development. In: Handbook of Cell Signaling, Academic Press, Burlington, 39-46. Wang YH, Bower NI, Reverter A, Tan SH, et al. (2009). Gene expression patterns during intramuscular fat development in cattle. J. Anim. Sci. 87: 119-130. PMid:18820161 Warner DR, Horn KH, Mudd L, Webb CL, et al. (2007). PRDM16/MEL1: a novel Smad binding protein expressed in murine embryonic orofacial tissue. Biochim. Biophys. Acta 1773: 814-820. PMid:17467076 Yang LL, Hua Q, Liu RK and Yang Z (2009). Association between two common polymorphisms of PPARgamma gene and metabolic syndrome families in a Chinese population. Arch. Med. Res. 40: 89-96. PMid:19237017 Zhang C, Wang Y, Chen H, Lan X, et al. (2007). Enhance the efficiency of single-strand conformation polymorphism analysis by short polyacrylamide gel and modified silver staining. Anal. Biochem. 365: 286-287. PMid:17449006