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2013
M. P. S. Barros, Silveira-Filho, V. M., Lins, R. H. F. B., Oliveira, M. B. M., Almeida, A. M. P., and Leal-Balbino, T. C., Subtyping Brazilian Yersinia pestis strains by pulsed-field gel electrophoresis, vol. 12, pp. 1294-1302, 2013.
Abath FG, Almeida AM and Ferreira LC (1989). Electrophoretic characterisation of the outer membrane proteins of Yersinia pestis isolated in north-east Brazil. Epidemiol. Infect. 103: 595-602. http://dx.doi.org/10.1017/S0950268800030995 PMid:2606164 PMCid:2249544   Almeida AMP, Guiyoule A, Leal NC and Carniel E (1994). Survey of the irp2 gene among Yersinia pestis strains isolated during several plague outbreaks in northeast Brazil. Mem. Inst. Oswaldo Cruz 89: 87-92. http://dx.doi.org/10.1590/S0074-02761994000100015   Aragão AI, Pinheiro KM, Seoane AC, Tavares C, et al. (2009). Prevalence of antibodies against Yersinia pestis in domestic carnivores, in plague foci in the State of Ceara. Rev. Soc. Bras. Med. Trop. 42: 711-715. http://dx.doi.org/10.1590/S0037-86822009000600019 PMid:20209360   Baltazard M (2004). 4e rapport (mai 1970) progress report. Recherches sur la peste au Brésil. Bull. Soc. Pathol. Exot. 97 (Suppl): 93-117.   de Almeida AM, Brasil DP, de Carvalho FG and de Almeida CR (1985). Isolation of Yersinia pestis in plague foci in northeast Brazil from 1966 to 1982. Rev. Inst. Med. Trop. São Paulo 27: 207-218. PMid:3832341   de Almeida AM, Brasil DP, Leal NC, de Melo ME, et al. (1989). Bacteriologic and serologic studies of an outbreak of plague in the State of Paraíba, Brazil. Mem. Inst. Oswaldo Cruz 84: 249-256. PMid:2635752   Dice LR (1945). Measures of the amount of ecological association between species. Ecology 26: 297-302. http://dx.doi.org/10.2307/1932409   Duplantier JM, Duchemin JB, Chanteau S and Carniel E (2005). From the recent lessons of the Malagasy foci towards a global understanding of the factors involved in plague reemergence. Vet. Res. 36: 437-453. http://dx.doi.org/10.1051/vetres:2005007 PMid:15845233   Gage KL and Kosoy MY (2005). Natural history of plague: perspectives from more than a century of research. Annu. Rev. Entomol. 50: 505-528. http://dx.doi.org/10.1146/annurev.ento.50.071803.130337 PMid:15471529   Guiyoule A, Grimont F, Iteman I, Grimont PA, et al. (1994). Plague pandemics investigated by ribotyping of Yersinia pestis strains. J. Clin. Microbiol. 32: 634-641. PMid:8195371 PMCid:263099   Huang XZ, Chu MC, Engelthaler DM and Lindler LE (2002). Genotyping of a homogeneous group of Yersinia pestis strains isolated in the United States. J. Clin. Microbiol. 40: 1164-1173. http://dx.doi.org/10.1128/JCM.40.4.1164-1173.2002 PMid:11923326 PMCid:140403   Hunter PR and Gaston MA (1988). Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J. Clin. Microbiol. 26: 2465-2466. PMid:3069867 PMCid:266921   Karimi Y (1978). Rapid laboratory diagnosis of plague. Bull. Soc. Pathol. Exot. Filiales 71: 45-48.   Leal-Balbino TC, Leal NC, Lopes CV and Almeida AM (2004). Differences in the stability of the plasmids of Yersinia pestis cultures in vitro: impact on virulence. Mem. Inst. Oswaldo Cruz 99: 727-732. http://dx.doi.org/10.1590/S0074-02762004000700011 PMid:15654429   Leal-Balbino TC, Leal NC, Nascimento MGM and Oliveira MBM (2006). The pgm locus and pigmentation phenotype in Yersinia pestis. Genet. Mol. Biol. 99: 727-732.   Leal NC and Almeida AM (1999). Diagnosis of plague and identification of virulence markers in Yersinia pestis by multiplex-PCR. Rev. Inst. Med. Trop. São Paulo 41: 339-342. http://dx.doi.org/10.1590/S0036-46651999000600002 PMid:10671286   Leal NC, de Almeida AM and Ferreira LC (1989). Plasmid composition and virulence-associated factors of Yersinia pestis isolates from a plague outbreak at the Paraíba State, Brazil. Rev. Inst. Med. Trop. São Paulo 31: 295-300. http://dx.doi.org/10.1590/S0036-46651989000500001 PMid:2629060   Leal NC, Sobreira M, Leal TCA and Almeida AMP (2000). Homology among extra-cryptic DNA bands and the typical plasmids in Brazilian Yersinia pestis strains. Braz. J. Microbiol. 31: 20-24. http://dx.doi.org/10.1590/S1517-83822000000100006   Lucier TS and Brubaker RR (1992). Determination of genome size, macrorestriction pattern polymorphism, and nonpigmentation-specific deletion in Yersinia pestis by pulsed-field gel electrophoresis. J. Bacteriol. 174: 2078-2086. PMid:1551830 PMCid:205823   Oliveira MBM, Barros MPS, Silveira-Filho VM, Araújo-Nepomuceno MR, et al. (2012). The genetic diversity of Yersinia pestis in Brazil. Braz. Genet. Mol. Res. 11: 3414-3424. http://dx.doi.org/10.4238/2012.September.25.10 PMid:23079835   Perry RD and Fetherston JD (1997). Yersinia pestis - etiologic agent of plague. Clin. Microbiol. Rev. 10: 35-66. PMid:8993858 PMCid:172914   Revazishvili T, Rajanna C, Bakanidze L, Tsertsvadze N, et al. (2008). Characterisation of Yersinia pestis isolates from natural foci of plague in the Republic of Georgia, and their relationship to Y. pestis isolates from other countries. Clin. Microbiol. Infect. 14: 429-436. http://dx.doi.org/10.1111/j.1469-0691.2008.01953.x PMid:18294239   Rocha SS, Almeida AMP, Leal NC, Cordeiro MT, et al. (2009). Biological collections from Aggeu Magalhães Research Center, Oswaldo Cruz Foundation: analysis of a workshop. Rev. Pat. Trop. 38: 299-309.   Stenseth NC, Atshabar BB, Begon M, Belmain SR, et al. (2008). Plague: past, present, and future. PLoS Med. 5: e3. http://dx.doi.org/10.1371/journal.pmed.0050003 PMid:18198939 PMCid:2194748   Tenover FC, Arbeit RD, Goering RV, Mickelsen PA, et al. (1995). Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: criteria for bacterial strain typing. J. Clin. Microbiol. 33: 2233-2239. PMid:7494007 PMCid:228385   Vogler AJ, Chan F, Wagner DM, Roumagnac P, et al. (2011). Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar. PLoS Negl. Trop. Dis. 5: e1319. http://dx.doi.org/10.1371/journal.pntd.0001319 PMid:21931876 PMCid:3172189   WHO (1965). Plague in the Americas. World Health Org. Scient. Publ. 115: 44-68.   WHO (2006). International meeting on preventing and controlling plague: the old calamity still has a future. Wkly. Epidemiol. Rec. 81: 278-284. PMid:16841399   WHO (2009). Human plague: review of regional morbidity and mortality, 2004-2009. Wkly. Epidemiol. Rec. 85: 40-45. PMid:20151494   Zhang Z, Hai R, Song Z, Xia L, et al. (2009). Spatial variation of Yersinia pestis from Yunnan Province of China. Am. J. Trop. Med. Hyg. 81: 714-717. http://dx.doi.org/10.4269/ajtmh.2009.09-0174 PMid:19815893
2012
M. B. M. Oliveira, Barros, M. P. S., Silveira-Filho, V. M., Araújo-Nepomuceno, M. R., Balbino, V. Q., Leal, N. C., Almeida, A. M. P., and Leal-Balbino, T. C., Genetic diversity of Yersinia pestis in Brazil, vol. 11, pp. 3414-3424, 2012.
Achtman M, Morelli G, Zhu P, Wirth T, et al. (2004). Microevolution and history of the plague bacillus, Yersinia pestis. Proc. Natl. Acad. Sci. U. S. A. 101: 17837-17842. http://dx.doi.org/10.1073/pnas.0408026101 PMid:15598742 PMCid:535704   Adair DM, Worsham PL, Hill KK, Klevytska AM, et al. (2000). Diversity in a variable-number tandem repeat from Yersinia pestis. J. Clin. Microbiol. 38: 1516-1519. PMid:10747136 PMCid:86479   Altschul SF, Madden TL, Schaffer AA, Zhang J, et al. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402. http://dx.doi.org/10.1093/nar/25.17.3389 PMid:9254694 PMCid:146917   Aragão AI, Pinheiro KMA, Seoane ACM and Tavares C (2009). Prevalência de anticorpos contra Yersinia pestis em carnívoros domésticos nos focos pestosos, do Estado do Ceará. Rev. Soc. Bras. Med. Trop. 42: 711-715. http://dx.doi.org/10.1590/S0037-86822009000600019 PMid:20209360   Baltazard M (1968). Viagem de estudo ao Brasil para a organização de um projeto de pesquisas sobre a peste. Rev. Bras. Malariol. Doenças Trop. 20: 335-366. PMid:5753503   Baltazard M (2004). Recherches sur la Peste au Brésil. 4e Rapport (Mai 1970) - Progress Report. Bull. Soc. Pathol. Exot. 97 (Suppl): 93-117.   Benson G (1999). Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27: 573-580. http://dx.doi.org/10.1093/nar/27.2.573 PMid:9862982 PMCid:148217   de Almeida AM, Brasil DP, de Carvalho FG and de Almeida CR (1985). Isolation of Yersinia pestis in plague foci in northeast Brazil from 1966 to 1982. Rev. Inst. Med. Trop. Sao Paulo 27: 207-218. PMid:3832341   de Almeida AM, Brasil DP, Leal NC, de Melo ME, et al. (1989). Bacteriologic and serologic studies of an outbreak of plague in the State of Paraiba, Brazil. Mem. Inst. Oswaldo Cruz 84: 249-256. PMid:2635752   Duplantier J, Duchemin J, Chanteau S and Carniel E (2005). From the recent lessons of the Malagasy foci towards a global understanding of the factors involved in plague reemergence. Vet. Res. 36: 437-453. http://dx.doi.org/10.1051/vetres:2005007 PMid:15845233   Gage KL and Kosoy MY (2005). Natural history of plague: perspectives from more than a century of research. Annu. Rev. Entomol. 50: 505-528. http://dx.doi.org/10.1146/annurev.ento.50.071803.130337 PMid:15471529   Giles J, Peterson AT and Almeida A (2011). Ecology and geography of plague transmission areas in northeastern Brazil. PLoS Negl. Trop. Dis. 5: e925. http://dx.doi.org/10.1371/journal.pntd.0000925 PMid:21245925 PMCid:3014986   Girard JM, Wagner DM, Vogler AJ, Keys C, et al. (2004). Differential plague-transmission dynamics determine Yersinia pestis population genetic structure on local, regional, and global scales. Proc. Natl. Acad. Sci. U. S. A. 101: 8408- 8413. http://dx.doi.org/10.1073/pnas.0401561101 PMid:15173603 PMCid:420407   Hall TA (1999). Bioedit a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids Symp. Ser. 41: 95-98.   Hunter PR and Gaston MA (1988). Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J. Clin. Microbiol. 26: 2465-2466. PMid:3069867 PMCid:266921   Karimi Y (1978). Rapid laboratory diagnosis of plague. Bull. Soc. Pathol. Exot. Filiales 71: 45-48.   Keim P, Price LB, Klevytska AM, Smith KL, et al. (2000). Multiple-locus variable-number tandem repeat analysis reveals genetic relationships within Bacillus anthracis. J. Bacteriol. 182: 2928-2936. http://dx.doi.org/10.1128/JB.182.10.2928-2936.2000 PMid:10781564 PMCid:102004   Klevytska AM, Price LB, Schupp JM, Worsham PL, et al. (2001). Identification and characterization of variable-number tandem repeats in the Yersinia pestis genome. J. Clin. Microbiol. 39: 3179-3185. http://dx.doi.org/10.1128/JCM.39.9.3179-3185.2001 PMid:11526147 PMCid:88315   Le Flèche P, Hauck Y, Onteniente L, Prieur A, et al. (2001). A tandem repeats database for bacterial genomes: application to the genotyping of Yersinia pestis and Bacillus anthracis. BMC Microbiol. 1: 2. http://dx.doi.org/10.1186/1471-2180-1-2 PMid:11299044 PMCid:31411   Leal-Balbino TC, Leal NC, Lopes CV and Almeida AM (2004). Differences in the stability of the plasmids of Yersinia pestis cultures in vitro: impact on virulence. Mem. Inst. Oswaldo Cruz. 99: 727-732. http://dx.doi.org/10.1590/S0074-02762004000700011 PMid:15654429   Leal-Balbino TC, Leal NC, Nascimento MGM and Oliveira MBM (2006). The pgm locus and pigmentation phenotype in Yersinia pestis. Genet. Mol. Biol. 29: 126-131. http://dx.doi.org/10.1590/S1415-47572006000100024   Leal NC and Almeida AM (1999). Diagnosis of plague and identification of virulence markers in Yersinia pestis by multiplex-PCR. Rev. Inst. Med. Trop. Sao Paulo 41: 339-342. http://dx.doi.org/10.1590/S0036-46651999000600002 PMid:10671286   Leal NC, Sobreira M, Leal TCA and Almeida AMP (2000). Homology among extra-cryptic DNA bands and the typical plasmids in Brazilian Yersinia pestis. Braz. J. Microbiol. 31: 20-24. http://dx.doi.org/10.1590/S1517-83822000000100006   Li Y, Cui Y, Hauck Y and Platonov ME (2009). Genotyping and phylogenetic analysis of Yersinia pestis by MLVA: insights into the worldwide expansion of Central Asia plague foci. PLoS One 22: e6000. http://dx.doi.org/10.1371/journal.pone.0006000 PMid:19543392 PMCid:2694983   Lowell JL, Wagner DM, Atshabar B, Antolin MF, et al. (2005). Identifying sources of human exposure to plague. J. Clin. Microbiol. 43: 650-656. http://dx.doi.org/10.1128/JCM.43.2.650-656.2005 PMid:15695659 PMCid:548095   Pollitzer R (1954). History and present distribution of plague in: plague. Monogr. Ser. World Health Organ 22: 11-45.   Pourcel C, Andre-Mazeaud F, Neubauer H, Ramisse F, et al. (2004). Tandem repeats analysis for the high resolution phylogenetic analysis of Yersinia pestis. BMC Microbiol. 4: 22. http://dx.doi.org/10.1186/1471-2180-4-22 PMid:15186506 PMCid:436057   Rasmussen SW (2002). SEQtools, A Software Package for Analysis of Nucleotide and Protein Sequences. Available at [http://www.seqtools.dk]. Accessed October 2, 2006.   Revazishvili T, Rajanna C, Bakanidze L, Tsertsvadze N, et al. (2008). Characterisation of Yersinia pestis isolates from natural foci of plague in the Republic of Georgia, and their relationship to Y. pestis isolates from other countries. Clin. Microbiol. Infect. 14: 429-436. http://dx.doi.org/10.1111/j.1469-0691.2008.01953.x PMid:18294239   Rocha SS, Almeida AMP, Leal NC and Cordeiro MT (2009). Biological collections from Aggeu Magalhães Research Center, Oswaldo Cruz Foundation: analysis of a workshop. Rev. Patol. Trop. 38: 299-309.   Souza G, Abath F, Leal N and Farias A (2007). Development and Evaluation of a Single Tube Nested PCR Based Approach (STNPCR) for the Diagnosis of Plague. In: The Genus Yersinia: From Genomics to Function (Perry RD and Fetherston JD, eds.). Springer, New York, 351-359. http://dx.doi.org/10.1007/978-0-387-72124-8_32   Stenseth NC, Atshabar BB, Begon M and Belmain SR (2008). Plague: past, present and future. PLoS Med. 5: e3. http://dx.doi.org/10.1371/journal.pmed.0050003 PMid:18198939 PMCid:2194748   Tamura K, Peterson D, Peterson N, Stecher G, et al. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28: 2731-2739. http://dx.doi.org/10.1093/molbev/msr121 PMid:21546353 PMCid:3203626   Vogler AJ, Chan F, Wagner DM, Roumagnac P, et al. (2011). Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar. PLoS Negl. Trop. Dis. 5: e1319. http://dx.doi.org/10.1371/journal.pntd.0001319 PMid:21931876 PMCid:3172189   WHO (1965). Plague in the Americas. World Health Organ. Scient. Publ. 115: 44-68.   WHO (2006). International meeting on prevention and controlling plague: the old calamity still has a future. Wkly. Epidemiol. Rec. 80: 278-284.   WHO (2009). Human plague: review of regional morbidity and mortality, 2004-2009. Wkly. Epidemiol. Rec. 85: 40-45. PMid:20151494