Publications

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2012
A. C. Fdos Santos, Marques, E. L. S., Gross, E., Souza, S. S., Dias, J. C. T., Brendel, M., and Rezende, R. P., Detection by denaturing gradient gel electrophoresis of ammonia-oxidizing bacteria in microcosms of crude oil-contaminated mangrove sediments, vol. 11, pp. 190-201, 2012.
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Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients. Appl. Environ. Microbiol. 63: 3233-3241. PMid:9251210    PMCid:168621 Hollocher TC, Tate ME and Nicholas DJ (1981). Oxidation of ammonia by Nitrosomonas europaea. Definite 18O-tracer evidence that hydroxylamine formation involves a monooxygenase. J. Biol. Chem. 256: 10834-10836. PMid:7287737 Islam KR and Weil RR (2000). Soil quality indicator properties in mid-Atlantic soils as influenced by conservation management. J. Soil Water Conserv. 55: 69-78. Jia Z and Conrad R (2009). Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil. Environ. Microbiol. 11: 1658-1671. http://dx.doi.org/10.1111/j.1462-2920.2009.01891.x PMid:19236445 Junier P, Kim OS, Junier T, Ahn TS, et al. (2009). Community analysis of betaproteobacterial ammonia-oxidizing bacteria using the amoCAB operon. Appl. Microbiol. Biotechnol. 83: 175-188. http://dx.doi.org/10.1007/s00253-009-1923-x PMid:19274459    PMCid:2845890 Karlen DL, Andrews SS and Doran JW (2001). Soil quality: Current concepts and applications. Adv. Agron. 74: 1-40. http://dx.doi.org/10.1016/S0065-2113(01)74029-1 Kasai Y, Kishira H, Syutsubo K and Harayama S (2001). Molecular detection of marine bacterial populations on beaches contaminated by the Nakhodka tanker oil-spill accident. Environ. Microbiol. 3: 246-255. http://dx.doi.org/10.1046/j.1462-2920.2001.00185.x PMid:11359510 Kathiresan K and Bingham BL (2001). Biology of mangroves and mangrove ecosystems. Adv. Mar. Biol. 40: 81-251. http://dx.doi.org/10.1016/S0065-2881(01)40003-4 Koops H-P, Purkhold U, Pommerening-Röser A, Timmermann G, et al. (2006). The Lithoautotrophic Ammonia-Oxidizing Bacteria. In: The Prokaryotes (Dworkin M, Falkow S, Rosenberg E, Schleifer K-H, et al., eds.). Vol. 2. Springer, New York, 778-811. http://dx.doi.org/10.1007/0-387-30745-1_36 Leahy JG and Colwell RR (1990). Microbial degradation of hydrocarbons in the environment. Microbiol. Rev. 54: 305- 315. PMid:2215423    PMCid:372779 Maciel BM, Santos AC, Dias JC, Vidal RO, et al. (2009). Simple DNA extraction protocol for a 16S rDNA study of bacterial diversity in tropical landfarm soil used for bioremediation of oil waste. Genet. Mol. Res. 8: 375-388. http://dx.doi.org/10.4238/vol8-1gmr559 PMid:19440973 McCaig AE, Embley TM and Prosser JI (1994). Molecular analysis of enrichment cultures of marine ammonia oxidisers. FEMS Microbiol. Lett. 120: 363-367. http://dx.doi.org/10.1111/j.1574-6968.1994.tb07059.x PMid:8076810 Muyzer G, de Waal EC and Uitterlinden AG (1993). Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59: 695-700. PMid:7683183    PMCid:202176 Nicol GW, Leininger S, Schleper C and Prosser JI (2008). The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria. Environ. Microbiol. 10: 2966-2978. http://dx.doi.org/10.1111/j.1462-2920.2008.01701.x PMid:18707610 Nicolaisen MH and Ramsing NB (2002). Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria. J. Microbiol. Methods 50: 189-203. http://dx.doi.org/10.1016/S0167-7012(02)00026-X Prosser JI (1989). Autotrophic nitrification in bacteria. Adv. Microb. Physiol. 30: 125-181. http://dx.doi.org/10.1016/S0065-2911(08)60112-5 Rotthauwe JH, Witzel KP and Liesack W (1997). The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl. Environ. Microbiol. 63: 4704-4712. 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PMid:2339874    PMCid:184364 Zhang LM, Wang M, Prosser JI, Zheng YM, et al. (2009). Altitude ammonia-oxidizing bacteria and archaea in soils of Mount Everest. FEMS Microbiol. Ecol. 70: 52-61. http://dx.doi.org/10.1111/j.1574-6941.2009.00775.x PMid:19780828