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2013
M. F. Alves, Barroso, P. A. V., Ciampi, A. Y., Hoffmann, L. V., Azevedo, V. C. R., and Cavalcante, U., Diversity and genetic structure among subpopulations of Gossypium mustelinum (Malvaceae), vol. 12, pp. 597-609, 2013.
Almeida VC, Hoffmann LV, Yokomizo GK, Costa JN, et al. (2009). In situ and genetic characterization of Gossypium barbadense L. from the States of Pará and Amapá, Brazil. Pesq. Agropec. Bras. 44: 719-725. http://dx.doi.org/10.1590/S0100-204X2009000700011   Barroso PAV, Hoffmann LV, Freitas RB, Batista CEA, et al. (2010). In situ conservation and genetic diversity of three populations of Gossypium mustelinum Miers ex Watt. Genet. Resour. Crop Evol. 57: 343-349. http://dx.doi.org/10.1007/s10722-009-9472-9   Bertini CHCM, Schuster I, Sediyama T, Barros EG, et al. (2006). Characterization and genetic diversity analysis of cotton using microsatellites. Genet. Mol. Biol. 29: 321-329. http://dx.doi.org/10.1590/S1415-47572006000200021   Borém A, Freire EC, Penna JCV and Barroso PAV (2003). Considerations about gene escape of cotton in Brazil. Crop Breed. Appl. Biotechnol. 3: 315-332.   Bowcock AM, Ruiz-Linares A, Tomfohrde J, Minch E, et al. (1994). High resolution of human evolutionary trees with polymorphic microsatellites. Nature 368: 455-457. http://dx.doi.org/10.1038/368455a0 PMid:7510853   Cavalcante U (2011). Caracterização Genética de Populações Naturais de Gossypium mustelinum Miers ex Watt. Master's thesis, UFRPE, Recife.   Doyle JJ and Doyle JL (1990). Isolation of plant DNA from fresh tissue. Focus 12: 13-15.   Evanno G, Regnaut S and Goudet J (2005). Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14: 2611-2620. http://dx.doi.org/10.1111/j.1365-294X.2005.02553.x PMid:15969739   Freire EC (2002). Fluxo gênico entre algodoeiros convencionais e transgênicos. Rev. Bras. Ol. Fibros. 6: 471-482.   Freire EC, Moreira JAN, Miranda AR, Percival AE, et al. (1990). Identificação de Novos Sítios de Ocorrência de Gossypium mustelinum no Brasil. Volume 10. Pesquisa em Andamento. Embrapa Algodão, Campina Grande.   Fu Y and Somers D (2009). Genome-wide reduction of genetic diversity in wheat breeding. Crop Sci. 49: 161-168. http://dx.doi.org/10.2135/cropsci2008.03.0125   Goudet J (2001). FSTAT: Program to Estimate and Test Gene Diversities and Fixation Indices (Software). Version 2.9.3. Available at [http://www2.unil.ch/popgen/softwares/fstat.htm]. Accessed July 27, 2011.   Iqbal MJ, Reddy OUK, El-Zik KM and Pepper AE (2001). A genetic bottleneck in the 'evolution under domestication' of upland cotton Gossypium hirsutum L. examined using DNA fingerprinting. Theor. Appl. Genet. 103: 547-554. http://dx.doi.org/10.1007/PL00002908   Kimura M and Weiss GH (1964). The stepping stone model of population structure and the decrease of genetic correlation with distance. Genetics 49: 561-576. PMid:17248204 PMCid:1210594   Lewis PO and Zaykin D (2001). Genetic Data Analysis: Computer Program for the Analysis of Allelic Data, Version 1.0 (d16c). Available at [http://hydrodictyon.eeb.uconn.edu/people/plewis/]. Accessed July 9, 2011.   Liu S, Saha S, Stelly D, Burr B, et al. (2000). Chromosomal assignment of microsatellite loci in cotton. J. Hered. 91: 326-332. http://dx.doi.org/10.1093/jhered/91.4.326 PMid:10912681   Mantel N (1967). The detection of disease clustering and a generalized regression approach. Cancer Res. 27: 209-220. PMid:6018555   McCarty JC, Wu J and Johnie NJ (2007). Use of primitive derived cotton accessions for agronomic and fiber traits improvement: variance components and genetic effects. Crop Sci. 47: 100-110. http://dx.doi.org/10.2135/cropsci2006.06.0404   Menezes IPP, Hoffmann LV, Alves MF, Morello CL, et al. (2008). Genetic distance among advanced lineages of cotton germplasm using RAPD and microsatellite markers. Pesq. Agropec. Bras. 10: 1339-1347. http://dx.doi.org/10.1590/S0100-204X2008001000012   Menezes IPP, Barroso PAV, Hoffmann LV, Lucena VS, et al. (2010). Genetic diversity of mocó cotton (Gossypium hirsutum race marie-galante) from the northeast of Brazil: implications for conservation. Botany 88: 765-773. http://dx.doi.org/10.1139/B10-045   Minch E (1997). MICROSAT. Version 1.5b. Stanford University Medical Center, Stanford. Available at [http://genetics.stanford.edu/hpgl/projects/microsat/]. Accessed July 18, 2011.   Nei M (1972). Genetic distance between populations. Am. Nat. 106: 283-292. http://dx.doi.org/10.1086/282771   Neves OS, Cavaleri PA, Grid-Papp IL and Fuzzato MG (1965). Algodoeiro selvagem do Nordeste do Brasil. Bragantia 24: 19-25. http://dx.doi.org/10.1590/S0006-87051965000100043   Nguyen TB, Giband M, Brottier P, Risterucci AM, et al. (2004). Wide coverage of the tetraploid cotton genome using newly developed microsatellite markers. Theor. Appl. Genet. 109: 167-175. http://dx.doi.org/10.1007/s00122-004-1612-1 PMid:14997301   Pickersgill B, Barrett SCH and Andrade D (1975). Wild Cotton in Northeast Brazil. Biotropica 7: 42-54. http://dx.doi.org/10.2307/2989799   Pritchard JK, Stephens M and Donnelly P (2007). Inference of population structure using multilocus genotype data. Genetics 155: 945-959.   Reif JC, Melchinger AE and Frisch M (2005). Genetical and mathematical properties of similarity and dissimilarity coefficients applied in plant breeding and seed bank management. Crop Sci. 45: 1-7. http://dx.doi.org/10.2135/cropsci2005.0001   Saitou N and Nei M (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425. PMid:3447015   Stephens SG and Phillips LL (1972). The history and geographical distribution of a polymorphic system in New World cottons. Biotropica 4: 49-60. http://dx.doi.org/10.2307/2989727   Weir BS and Cockerham CC (1984). Estimating F-statistics for the analysis of population structure. Evolution 38: 1358- 1370. http://dx.doi.org/10.2307/2408641   Wendel JFE and Brubaker CL (1993). RFLP diversity in Gossypium hirsutum L. and new insights into the domestication of cotton. Am. J. Bot. 80: 71.   Wendel JFE, Rowley R and Stewart MCD (1994). Genetic diversity in phylogenetic relationships of the Brazilian endemic cotton, Gossypium mustelinum (Malvaceae). Plant Syst. Evol. 192: 49-59. http://dx.doi.org/10.1007/BF00985907
P. S. Sujii, Inglis, P. W., Ciampi, A. Y., Solferini, V. N., and Azevedo, V. C. R., Isolation and characterization of microsatellite markers for Bertholletia excelsa (Lecythidaceae) population genetic analysis, vol. 12, pp. 5278-5282, 2013.
P. S. Sujii, Fernandes, E. T. M. B., Azevedo, V. C. R., Ciampi, A. Y., Martins, K., and Wadt, L. Hde O., Morphological and molecular characteristics do not confirm popular classification of the Brazil nut tree in Acre, Brazil, vol. 12, pp. 4018-4027, 2013.
2012
E. V. Menezes, Souto, W. F. S., Ciampi, A. Y., Azevedo, V. C. R., Valério, H. M., and Pimenta, M. A. S., Development and characterization of DNA microsatellite primers for buriti (Mauritia flexuosa L.f.), vol. 11, pp. 4058-4062, 2012.
Brown B, Wang HP, Li L, Givens C, et al. (2007). Yellow perch strain evaluation I: genetic variance of six broodstock populations. Aquaculture 271: 142-151. http://dx.doi.org/10.1016/j.aquaculture.2007.06.022   Buso GSC, Ciampi AY, Moretzohn MC, Amaral ZPS, et al. (2003). Marcadores microssatélites em espécies vegetais. Biotecnol. Cienc. Desenvol. 30: 46-50.   Collevatti RG, Grattapaglia D and Hay JD (2001). High resolution microsatellite based analysis of the mating system allows the detection of significant biparental inbreeding in Caryocar brasiliense, an endangered tropical tree species. Heredity 86: 60-67. http://dx.doi.org/10.1046/j.1365-2540.2001.00801.x PMid:11298816   Doyle JJ and Doyle JL (1987). Isolation of plant DNA from fresh tissue. Focus 12: 13-15.   Hamrick JL and Nason JD (1996). Consequences of Dispersal in Plants. In: Population Dynamics in Ecological Spaceand Time (Rodhes OEJ, Chesser RK and Smith MH, eds.). University of Chicago Press, Chicago, 203-236.   Henderson A, Galeano G and Bernal R (1995). Field Guide to the Palms of the Americas. Princeton University Press, Princeton.   Jepson W (2005). A disappearing biome? Reconsidering land-cover change in the Brazilian savanna. Geograph. J. 171: 99-111. http://dx.doi.org/10.1111/j.1475-4959.2005.00153.x   Klink CA and Moreira AG (2002). Past and Current Human Occupation and Land Use. In: The Cerrados of Brazil: Ecology and Natural History of a Neotropical Savanna (Oliveira PS and Marquis RJ, eds.). Columbia University Press, New York, 69-88.   Klink CA and Machado RB (2005). Conservation of the Brazilian Cerrado. Conserv. Biol. 19: 707-713. http://dx.doi.org/10.1111/j.1523-1739.2005.00702.x   Leclerc E, Mailhot Y, Mingelbier M and Bernatchez L (2008). The landscape genetics of yellow perch (Perca flavescens) in a large fluvial ecosystem. Mol. Ecol. 17: 1702-1717. http://dx.doi.org/10.1111/j.1365-294X.2008.03710.x PMid:18331242   Machado FRB, Vinson CC, Silva VP and Ciampi AY (2002). Extração de DNA Genômico de Câmbios de Espécies Madeireiras Tropicais. 53º Congresso Nacional de Botânica, Pernanbuco, Brasil. Sociedade Brasileira de Botânica, Recife.   Oliveira PS and Marquis RJ (2002). The Cerrados of Brazil: Ecology and Natural History of a Neotropical Savanna. Columbia University Press, New York.   Prada MV (1994). Guilda de Frugívoros Associada com o Buriti (Mauritia Flexuosa: Palmae) numa "Vereda" no Brasil Central. Master's thesis, Universidade de Brasília, Brasília.   Rafalski DJA (1996). Generating and Using DNA Markers in Plant. In: Non-Mammalian Genomic Analysis: A Practical Guide (Birren B and Lai E, eds.). Academic, New York, 75-134.   Raymond M and Rousset F (1995). GENEPOP version 1.2: population genetics software for exat tests and ecumenicism. J. Heredity 248-249.   Ribeiro JF and Walter BMT (1998). Fitofisionomias do Bioma Cerrado. Cerrado Ambiente e Flora, In: Cerrado Ambiente e Flora (Sano SM and Almeida SP, eds.). Embrapa, Planaltina, 89-166.   Wagner HW and Sefc KM (1999). IDENTITY 1.0 Center for Applied Genetics, University of Agricultural Sciences, Vienna.   Weir BS (1996). Genetic Data Analysis II: Methods for Discrete Population Genetic Data. Sinauer Assoc. Inc., Sunderland.