Publications

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2012
T. M. Barroca, Santos, G. B., Duarte, N. V. R., and Kalapothakis, E., Evaluation of genetic diversity and population structure in a commercially important freshwater fish Prochilodus costatus (Characiformes, Prochilodontidae) using complex hypervariable repeats, vol. 11, pp. 4456-4467, 2012.
Agostinho AA, Vazzoler AEA de M, Gomes LC and Okada EK (1993). Estratificación y comportamiento de Prochilodus scrofa em distintas fases del ciclo de vida, em la planície de inundação del alto rio Paraná y embalse de Itaipu, Paraná, Brasil. Rev. Hydrobiol. 26: 79-90.   Agostinho AA, Gomes LC and Pelicice FM (2007). Ecologia e Manejo de Recursos Pesqueiros em Reservatórios do Brasil. Eduem, Maringá.   Araki H, Cooper B and Blouin S (2007). Genetic effects of captive breeding cause rapid, cumulative fitness decline in the wild. Science 318: 100-103. http://dx.doi.org/10.1126/science.1145621 PMid:17916734   Avise JC, Arnold J, Ball R, Bermingham E, et al. (1987). Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematic. Annu. Rev. Ecol. Syst. 18: 489-522.   Barbosa ACDR, Galzerani F, Corrêa TC, Galetti PM Jr, et al. (2008). Description of novel microsatellite loci in the Neotropical fish Prochilodus argenteus and cross-amplification in P. costatus and P.lineatus. Genet. Mol. Biol. 31: 357-360. http://dx.doi.org/10.1590/S1415-47572008000200032   Bonetto AA (1986). Fish of the Paraná System. In: The Ecology of River Systems (Davies BR and Walker KF, eds.). Dr. W. Junk, Dordrecht, 573-588. http://dx.doi.org/10.1007/978-94-017-3290-1_11   Bowen SH (1983). Detritivory in Neotropical fish communities. Environ. Biol. Fish. 9: 137-144. http://dx.doi.org/10.1007/BF00690858   Butler JM, Hill CR, Kline MC, Duewer DL, et al. (2009). The single most polymorphic STR Locus: SE33 performance in U.S. populations. Genet. Suppl. Ser. 2: 23-24.   Chenuil A (2006). Choosing the right molecular genetic markers for studying biodiversity: from molecular evolution to practical aspects. Genetica 127: 101-120. http://dx.doi.org/10.1007/s10709-005-2485-1 PMid:16850217   De Camargo SAF and Petrere M Jr (2001). Social and financial aspects of the artisanal fisheries of Middle São Francisco River, Minas Gerais, Brazil. Fish. Manag. Ecol. 8: 163-171. http://dx.doi.org/10.1046/j.1365-2400.2001.00246.x   Denier K, Garza JC, Coey R and Gorman DJ (2007). Population structure and genetic structure of trout (Onchorynchus mykiss) above and below natural and man-made barriers in the Russian River, California. Conserv. Genet. 8: 437- 454. http://dx.doi.org/10.1007/s10592-006-9183-0   Ellegren H (2004). Microsatellites: simple sequences with complex evolution. Nat. Rev. Genet. 5: 435-445. http://dx.doi.org/10.1038/nrg1348 PMid:15153996   Excoffier L and Lischer HE (2010). Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Resour. 10: 564-567. http://dx.doi.org/10.1111/j.1755-0998.2010.02847.x PMid:21565059   Excoffier L, Smouse PE and Quattro JM (1992). Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491. PMid:1644282 PMCid:1205020   Flecker AS (1996). Ecosystem engineering by a dominant detritivore in a diverse tropical stream. Ecology 77: 1845-1854. http://dx.doi.org/10.2307/2265788   Frankham R, Ballou JD and Briscoe DA (2004). A Primer of Conservation Genetics. Cambridge University Press, Cambridge. http://dx.doi.org/10.1017/CBO9780511817359 PMid:15477597 PMCid:524053   Fraser DJ (2008). How well can captive breeding programs conserve biodiversity? A review of salmonids. Evol. Appl. 1: 535-586. PMCid:3352391   Gill P, Kimpton C, D'Aloja E, Andersen JF, et al. (1994). Report of the European DNA profiling group (EDNAP)-towards standardisation of short tandem repeat (STR) loci. Forensic Sci. Int. 65: 51-59. http://dx.doi.org/10.1016/0379-0738(94)90299-2   Hsu T-H, Guillén Madrid AG, Burridge CP, Cheng H-Y, et al. (2011). Resolution of the Acanthopagrus black seabream complex based on mitochondrial and amplified fragment-length polymorphism analyses. J. Fish Biol. 78: 1182-1192. http://dx.doi.org/10.1111/j.1095-8649.2011.03100.x PMid:22026601   Jager HI, Chandler JA, Lepla KB and Van Winkle W (2001). A theoretical study of river fragmentation by dams and its effects on white sturgeon populations. Environ. Biol. Fish 60: 347-361. http://dx.doi.org/10.1023/A:1011036127663   Madeira MJ, Gómez-Moliner B and Barbe A (2005). Genetic introgression on freshwater fish populations caused by restocking programmes. Biol. Invasions 7: 117-125. http://dx.doi.org/10.1007/s10530-004-9641-x   Mantel N (1967). The detection of disease clustering and a generalized regression approach. Cancer Res. 27: 209-220. PMid:6018555   Miller MP (2005). Alleles in Space (AIS): computer software for the joint analysis of interindividual spatial and genetic information. J. Hered. 96: 722-724. http://dx.doi.org/10.1093/jhered/esi119 PMid:16251514   Nei M and Kumar S (2000). Molecular Evolution and Phylogenetics. Oxford University Press, New York. PMCid:27115   Neraas LP and Spruell P (2001). Fragmentation of riverine systems: the genetic effects of dams on bull trout (Salvelinus confluentus) in the Clark Fork River system. Mol. Ecol. 10: 1153-1164. http://dx.doi.org/10.1046/j.1365-294X.2001.01269.x PMid:11380874   Paiva AL and Kalapothakis E (2008). Isolation and characterization of microsatellite loci in Pimelodus maculatus (Siluriformes: Pimelodidae). Mol. Ecol. Resour. 8: 1078-1080. http://dx.doi.org/10.1111/j.1755-0998.2008.02160.x PMid:21585977   Petrere M Jr (1996). Fisheries in large tropical reservoirs in South America. Lake Reservoirs: Res. Manag. 2: 111-133. http://dx.doi.org/10.1111/j.1440-1770.1996.tb00054.x   Reid SM, Wilson CC, Mandrak NE and Carl LM (2008). Population structure and genetic diversity of black redhorse (Moxostoma duquesnei) in a highly fragmented watershed. Conserv. Genet. 9: 531-546. http://dx.doi.org/10.1007/s10592-007-9367-2   Reid TM, Ingala DA, Kraemer CM, Dage WM, et al. (2003). Distribution of HUMACTBP2 (SE33) alleles in three North American populations. J. Forensic Sci. 48: 1422-1423. PMid:14640295   Saitou N and Nei M (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425. PMid:3447015   Sambrook J and Russell D (2001). Molecular Cloning: A Laboratory Manual. 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor.   Sato Y and Godinho HP (2003). Migratory Fishes of the São Francisco River. In: Migratory Fishes of South America: Biology, Fisheries and Conservation Status (Carolsfeld J, Harvey B, Ross C and Baer A, eds.). World Fisheries Trust, Victoria, 195-232.   Schlötterer C (2000). Evolutionary dynamics of microsatellite DNA. Chromosoma 109: 365-371. http://dx.doi.org/10.1007/s004120000089 PMid:11072791   Sivasundar A, Bermingham E and Ortí G (2000). Population structure and biogeography of migratory freshwater fishes (Prochilodus: Characiformes) in major South American rivers. Mol. Ecol. 10: 407-417. http://dx.doi.org/10.1046/j.1365-294x.2001.01194.x   Tamura K, Dudley J, Nei M and Kumar S (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24: 1596-1599. http://dx.doi.org/10.1093/molbev/msm092 PMid:17488738   Urquhart A, Kimpton CP and Gill P (1993). Sequence variability of the tetranucleotide repeat of the human beta-actin related pseudogene H-beta-Ac-psi-2 (ACTBP2) locus. Hum. Genet. 92: 637-638. http://dx.doi.org/10.1007/BF00420957 PMid:8262529   Welcomme RL (1979). Fisheries Ecology of Floodplain Rivers. Logman Group Limited, London.   Wright S (1951). The genetical structure of populations. Ann. Eug. 15: 323-354.   Yazbeck GM and Kalapothakis E (2007). Isolation and characterization of microsatellite DNA in the piracema fish Prochilodus lineatus (Characiformes). Genet. Mol. Res. 6: 1026-1034. PMid:18273795   Zane L, Bargelloni L and Patarnello T (2002). Strategies for microsatellite isolation: a review. Mol. Ecol. 11: 1-16. http://dx.doi.org/10.1046/j.0962-1083.2001.01418.x PMid:11903900
2010
A. M. Souza, Reis, J. K. P., Assis, R. A., Horta, C. C., Siqueira, F. F., Facchin, S., Alvarenga, E. R., Castro, C. S., Salvarani, F. M., Silva, R. O. S., Pires, P. S., Contigli, C., Lobato, F. C. F., and Kalapothakis, E., Molecular cloning and expression of epsilon toxin from Clostridium perfringens type D and tests of animal immunization, vol. 9, pp. 266-276, 2010.
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Microbiol. 31: 85-92. http://dx.doi.org/10.1111/j.1574-695X.2001.tb00503.x PMid:11549414   Dorca-Arévalo J, Soler-Jover A, Gibert M, Popoff MR, et al. (2008). Binding of epsilon-toxin from Clostridium perfringens in the nervous system. Vet. Microbiol. 131: 14-25. http://dx.doi.org/10.1016/j.vetmic.2008.02.015 PMid:18406080   Felsenstein J (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791. http://dx.doi.org/10.2307/2408678   Finnie JW (2004). Neurological disorders produced by Clostridium perfringens type D epsilon toxin. Anaerobe 10: 145-150. http://dx.doi.org/10.1016/j.anaerobe.2003.08.003 PMid:16701511   Finnie JW, Blumbergs PC and Manavis J (1999). Neuronal damage produced in rat brains by Clostridium perfringens type D epsilon toxin. J. Comp. Pathol. 120: 415-420. http://dx.doi.org/10.1053/jcpa.1998.0289 PMid:10208737   Finnie JW, Manavis J and Blumbergs PC (2008). Aquaporin-4 in acute cerebral edema produced by Clostridium perfringens type D epsilon toxin. Vet. Pathol. 45: 307-309. http://dx.doi.org/10.1354/vp.45-3-307 PMid:18487486   Ghabriel MN, Zhu C, Reilly PL, Blumbergs PC, et al. (2000). Toxin-induced vasogenic cerebral oedema in a rat model. Acta Neurochir. (Suppl 76): 231-236.   Hunter SE, Clarke IN, Kelly DC and Titball RW (1992). Cloning and nucleotide sequencing of the Clostridium perfringens epsilon-toxin gene and its expression in Escherichia coli. Infect. Immun. 60: 102-110. PMid:1729175 PMCid:257509   Kalapothakis E and Chávez-Olórtegui C (1997). Venom variability among several Tityus serrulatus specimens. Toxicon 35: 1523-1529. http://dx.doi.org/10.1016/S0041-0101(97)00017-2   Laemmli UK (1970). Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680-685. http://dx.doi.org/10.1038/227680a0 PMid:5432063   McClane BA (2005). Clostridial Enterotoxins. In: Handbook on Clostridia (Durre P, ed.). CRC Press, Boca Raton, 385-406. http://dx.doi.org/10.1201/9780203489819.ch18   McDonel JL (1986). Toxins of Clostridium perfringens Types A, B, C, D and E. In: Pharmacology of Bacterial Toxins (Dorner F and Drews J, eds.). Pergamon Press, Oxford, 477-517.   Mendes TM, Dias F, Horta CC, Pena IF, et al. (2008). Effective Tityus serrulatus anti-venom produced using the Ts1 component. Toxicon 52: 787-793. http://dx.doi.org/10.1016/j.toxicon.2008.08.005 PMid:18775739   Minami J, Katayama S, Matsushita O, Matsushita C, et al. (1997). Lambda-toxin of Clostridium perfringens activates the precursor of epsilon-toxin by releasing its N- and C-terminal peptides. Microbiol. Immunol. 41: 527-535. PMid:9272698   Miyamoto K, Li J, Sayeed S, Akimoto S, et al. (2008). Sequencing and diversity analyses reveal extensive similarities between some epsilon-toxin-encoding plasmids and the pCPF5603 Clostridium perfringens enterotoxin plasmid. J. 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PMid:7284751   Tamura K, Dudley J, Nei M and Kumar S (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24: 1596-1599. http://dx.doi.org/10.1093/molbev/msm092 PMid:17488738   Titball RW, Naylor CE and Basak AK (1999). The Clostridium perfringens alpha-toxin. Anaerobe 5: 51-64. http://dx.doi.org/10.1006/anae.1999.0191 PMid:16887662   Uzal FA, Plumb JJ, Blackall LL, O'Boyle D, et al. (1996). Detection by polymerase chain reaction of Clostridium perfringens producing epsilon toxin in faeces and in gastrointestinal contents of goats. Lett. Appl. Microbiol. 23: 13-17. http://dx.doi.org/10.1111/j.1472-765X.1996.tb00019.x PMid:8679138   Uzal FA, Plumb JJ, Blackall LL and Kelly WR (1997). PCR detection of Clostridium perfringens producing different toxins in faeces of goats. Lett. Appl. Microbiol. 25: 339-344. http://dx.doi.org/10.1046/j.1472-765X.1997.00247.x PMid:9418069   Worthington RW and Mulders MS (1977). 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