Publications
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“Culture-independent analysis of endophytic bacterial communities associated with Brazilian sugarcane”, vol. 12, pp. 4549-4558, 2013.
, “Diversity of endophytic bacteria in Brazilian sugarcane”, vol. 9, pp. 250-258, 2010.
, Araújo WL, Marcon J, Maccheroni W Jr, Van Elsas JD, et al. (2002). Diversity of endophytic bacterial populations and their interaction with Xylella fastidiosa in citrus plants. Appl. Environ. Microbiol. 68: 4906-4914.
http://dx.doi.org/10.1128/AEM.68.10.4906-4914.2002
PMid:12324338 PMCid:126398
Baldani JI, Baldani VLD, Seldin L and Döbereiner J (1986). Characterization of Herbaspirillum seropedicae gen. nov., sp. nov., a root-associated nitrogen-fixing bacterium. Int. J. Syst. Bacteriol. 36: 86-93.
http://dx.doi.org/10.1099/00207713-36-1-86
Bell CR, Dickie GA, Harvey WLG and Chan JWYF (1995). Endophytic bacteria in grapevine. Can. J. Microbiol. 41: 46-53.
http://dx.doi.org/10.1139/m95-006
Burd GI, Dixon DG and Glick BR (1998). A plant growth-promoting bacterium that decreases nickel toxicity in seedlings. Appl. Environ. Microbiol. 64: 3663-3668.
PMid:9758782 PMCid:106500
Caballero-Mellado J and Martinez-Romero E (1994). Limited genetic diversity in the endophytic sugarcane bacterium Acetobacter diazotrophicus. Appl. Environ. Microbiol. 60: 1532-1537.
PMid:16349254 PMCid:201513
Cavalcante VA and Döbereiner J (1988). A new acid-tolerant nitrogen-fixing bacterium associated with sugarcane. Plant Soil 108: 23-31.
http://dx.doi.org/10.1007/BF02370096
Dent KC, Stephen JR and Finch-Savage WE (2004). Molecular profiling of microbial communities associated with seeds of Beta vulgaris subsp. vulgaris (sugar beet). J. Microbiol. Methods 56: 17-26.
http://dx.doi.org/10.1016/j.mimet.2003.09.001
PMid:14706747
Dixon R, Kennedy C, Kondorosi A, Krishnapillai V, et al. (1977). Complementation analysis of Klebsiella pneumoniae mutants defective in nitrogen fixation. Mol. Gen. Genet. 157: 189-198.
http://dx.doi.org/10.1007/BF00267397
PMid:340923
Döbereiner J, Baldani VLD and Baldani JI (1995). Meios de Culturas e Soluções Utilizadas. In: Como Isolar e Identificar Bactérias Diazotróficas de Plantas Não-Leguminosas (Motta AC, Oliveira MAS, Martins FC and Quazi TSG, eds.). CNPAB-Embrapa, Brasília, 47-53.
Ewing B, Hillier L, Wendl MC and Green P (1998). Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8: 175-185.
PMid:9521921
Feng Y, Shen D and Song W (2006). Rice endophyte Pantoea agglomerans YS19 promotes host plant growth and affects allocations of host photosynthates. J. Appl. Microbiol. 100: 938-945.
http://dx.doi.org/10.1111/j.1365-2672.2006.02843.x
PMid:16629994
Germida JJ and Siciliano SD (2001). Taxonomic diversity of bacteria associated with the roots of modern, recent and ancient wheat cultivars. Biol. Fertil. Soils 33: 410-415.
http://dx.doi.org/10.1007/s003740100343
Germida JJ, Siciliano SD, Freitas R and Seib AM (1998). Diversity of root-associated bacteria associated with field-grown canola (Brassica napus L.) and wheat (Tritricum aestivum L.). FEMS Microbiol. Ecol. 26: 43-50.
http://dx.doi.org/10.1111/j.1574-6941.1998.tb01560.x
Gurtler JB, Kornacki JL and Beuchat LR (2005). Enterobacter sakazakii: a coliform of increased concern to infant health. Int. J. Food Microbiol. 104: 1-34.
http://dx.doi.org/10.1016/j.ijfoodmicro.2005.02.013
PMid:16039742
Hallmann J, Mahaffee WF, Kloepper JW and Quadthallmann A (1997). Bacterial endophytes in agricultural crops. Can. J. Microbiol. 43: 895-914.
http://dx.doi.org/10.1139/m97-131
Hirano SS and Upper CD (2000). Bacteria in the leaf ecosystem with emphasis on Pseudomonas syringae - a pathogen, ice nucleus, and epiphyte. Microbiol. Mol. Biol. Rev. 64: 624-653.
http://dx.doi.org/10.1128/MMBR.64.3.624-653.2000
PMid:10974129 PMCid:99007
Huang X and Madan A (1999). CAP3: A DNA sequence assembly program. Genome Res. 9: 868-877.
http://dx.doi.org/10.1101/gr.9.9.868
PMid:10508846 PMCid:310812
Idris R, Trifonova R, Puschenreiter M, Wenzel WW, et al. (2004). Bacterial communities associated with flowering plants of the Ni hyperaccumulator Thlaspi goesingense. Appl. Environ. Microbiol. 70: 2667-2677.
http://dx.doi.org/10.1128/AEM.70.5.2667-2677.2004
PMid:15128517 PMCid:404397
Koneman EW, Allen SD, Janda WM, Schreckenberger PC, et al. (2001). Diagnóstico Microbiológico. Texto e Atlas Colorido. 5th edn. MEDSI Editora Médica e Científica, Rio de Janeiro.
Kuklinsky-Sobral J, Araújo WL, Mendes R, Geraldi IO, et al. (2004). Isolation and characterization of soybean-associated bacteria and their potential for plant growth promotion. Environ. Microbiol. 6: 1244-1251.
http://dx.doi.org/10.1111/j.1462-2920.2004.00658.x
PMid:15560822
Lacava PT, Araujo WL, Marcon J, Maccheroni W Jr, et al. (2004). Interaction between endophytic bacteria from citrus plants and the phytopathogenic bacteria Xylella fastidiosa, causal agent of citrus-variegated chlorosis. Lett. Appl. Microbiol. 39: 55-59.
http://dx.doi.org/10.1111/j.1472-765X.2004.01543.x
PMid:15189288
Loiret FG, Ortega E, Kleiner D, Ortega-Rodes P, et al. (2004). A putative new endophytic nitrogen-fixing bacterium Pantoea sp. from sugarcane. J. Appl. Microbiol. 97: 504-511.
http://dx.doi.org/10.1111/j.1365-2672.2004.02329.x
PMid:15281930
Medrano EG and Bell AA (2007). Role of Pantoea agglomerans in opportunistic bacterial seed and boll rot of cotton (Gossypium hirsutum) grown in the field. J. Appl. Microbiol. 102: 134-143.
http://dx.doi.org/10.1111/j.1365-2672.2006.03055.x
PMid:17184328
Mengoni A, Mocali S, Surico G, Tegli S, et al. (2003). Fluctuation of endophytic bacteria and phytoplasmosis in elm trees. Microbiol. Res. 158: 363-369.
http://dx.doi.org/10.1078/0944-5013-00216
PMid:14717459
Mercier J and Lindow SE (2000). Role of leaf surface sugars in colonization of plants by bacterial epiphytes. Appl. Environ. Microbiol. 66: 369-374.
http://dx.doi.org/10.1128/AEM.66.1.369-374.2000
PMid:10618250 PMCid:91832
Miller JH (1992). A Short Course in Bacterial Genetics: A Laboratory Manual and Handbook for Escherichia coli and Related Bacteria. Cold Spring Harbor Laboratory Press, New York.
Misko AL and Germida JJ (2002). Taxonomic and functional diversity of pseudomonads isolated from the roots of field-grown canola. FEMS Microbiol. Ecol. 42: 399-407.
http://dx.doi.org/10.1111/j.1574-6941.2002.tb01029.x
PMid:19709299
Mocali S, Bertelli E, Di CF, Mengoni A, et al. (2003). Fluctuation of bacteria isolated from elm tissues during different seasons and from different plant organs. Res. Microbiol. 154: 105-114.
http://dx.doi.org/10.1016/S0923-2508(03)00031-7
Olivares FL, Baldani VLD, Reis VM, Baldani JI, et al. (1996). Occurrence of the endophytic diazotrophs Herbaspirillum spp. in roots, stems, and leaves, predominantly of Gramineae. Biol. Fertil. Soils 21: 197-200.
http://dx.doi.org/10.1007/BF00335935
Pedrosa SO and Yates MG (1984). Regulation of nitrogen fixation (nif) genes of Azospirillum brasilense by nifA and ntr (gln) type gene products. FEMS Microbiol. Lett. 23: 95-101.
http://dx.doi.org/10.1111/j.1574-6968.1984.tb01042.x
Rasche F, Trondl R, Naglreiter C, Reichenauer TG, et al. (2006). Chilling and cultivar type affect the diversity of bacterial endophytes colonizing sweet pepper (Capsicum anuum L.). Can. J. Microbiol. 52: 1036-1045.
http://dx.doi.org/10.1139/w06-059
PMid:17215894
Reis Júnior FB, Silva LG, Reis VM and Döbereiner J (2000). Occurrence of diazothrophic bacteria in different sugar cane genotypes. [Ocorrência de bactérias diazotróficas em diferentes genótipos de cana-de-açúcar]. Pesq. Agropec. Bras. 35: 985-994.
Reiter B, Pfeifer U, Schwab H and Sessitsch A (2002). Response of endophytic bacterial communities in potato plants to infection with Erwinia carotovora subsp. atroseptica. Appl. Environ. Microbiol. 68: 2261-2268.
http://dx.doi.org/10.1128/AEM.68.5.2261-2268.2002
PMid:11976096 PMCid:127529
Sambrook J, Fritsch EF and Maniatis T (1989). Molecular Cloning: a Laboratory Manual. 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
Sarkar PK, Hasenack B and Nout MJ (2002). Diversity and functionality of Bacillus and related genera isolated from spontaneously fermented soybeans (Indian Kinema) and locust beans (African Soumbala). Int. J. Food Microbiol. 77: 175-186.
http://dx.doi.org/10.1016/S0168-1605(02)00124-1
Sessitsch A, Reiter B, Pfeifer U and Wilhelm E (2002). Cultivation-independent population analysis of bacterial endophytes in three potato varieties based on eubacterial and Actinomycetes-specific PCR of 16S rRNA genes. FEMS Microbiol. Ecol. 39: 23-32.
http://dx.doi.org/10.1111/j.1574-6941.2002.tb00903.x
PMid:19709181
Strobel G and Daisy B (2003). Bioprospecting for microbial endophytes and their natural products. Microbiol. Mol. Biol. Rev. 67: 491-502.
http://dx.doi.org/10.1128/MMBR.67.4.491-502.2003
PMid:14665674 PMCid:309047
Sturz AV, Christie BR, Matheson BG, Arsenault WJ, et al. (1999). Endophytic bacterial communities in the periderm of potato tubers and their potential to improve resistance to soil-borne plant pathogens. Plant Pathol. 48: 360-369.
http://dx.doi.org/10.1046/j.1365-3059.1999.00351.x
Suman A, Shasany AK, Singh M, Shahi HN, et al. (2001). Molecular assessment of diversity among endophytic diazotrophs isolated from subtropical Indian sugarcane. World J. Microbiol. Biotechnol. 17: 39-45.
http://dx.doi.org/10.1023/A:1016624701517
Sun L, Qiu F, Zhang X, Dai X, et al. (2008). Endophytic bacterial diversity in rice (Oryza sativa L.) roots estimated by 16S rDNA sequence analysis. Microb. Ecol. 55: 415-424.
http://dx.doi.org/10.1007/s00248-007-9287-1
PMid:17690836
UNICA (União da Indústria da Cana-de-Açúcar) (2009). Dados e Cotações - Estatísticas. Available at [http://www.unica.com.br/dadosCotacao/estatistica/]. Accessed October 19, 2009.
Vivas A, Voros I, Biro B, Campos E, et al. (2003). Symbiotic efficiency of autochthonous arbuscular mycorrhizal fungus (G. mosseae) and Brevibacillus sp. isolated from cadmium polluted soil under increasing cadmium levels. Environ. Pollut. 126: 179-189.
http://dx.doi.org/10.1016/S0269-7491(03)00195-7
Zinniel DK, Lambrecht P, Harris NB, Feng Z, et al. (2002). Isolation and characterization of endophytic colonizing bacteria from agronomic crops and prairie plants. Appl. Environ. Microbiol. 68: 2198-2208.
http://dx.doi.org/10.1128/AEM.68.5.2198-2208.2002
PMid:11976089 PMCid:127535