Found 3 results
Filters: Author is X.W. Zhang  [Clear All Filters]
X. Z. Kan, Li, X. F., Zhang, L. Q., Chen, L., Qian, C. J., Zhang, X. W., and Wang, L., Characterization of the complete mitochondrial genome of the Rock pigeon, Columba livia (Columbiformes: Columbidae), vol. 9, pp. 1234-1249, 2010.
Boore JL (1999). Animal mitochondrial genomes. Nucleic Acids Res. 27: 1767-1780. PMid:10101183 PMCid:148383   Brown GG, Gadaleta G, Pepe G, Saccone C, et al. (1986). Structural conservation and variation in the D-loop-containing region of vertebrate mitochondrial DNA. J. Mol. Biol. 192: 503-511.   Cooper A, Lalueza-Fox C, Anderson S, Rambaut A, et al. (2001). Complete mitochondrial genome sequences of two extinct moas clarify ratite evolution. Nature 409: 704-707. PMid:11217857   Gibb GC, Kardailsky O, Kimball RT, Braun EL, et al. (2007). Mitochondrial genomes and avian phylogeny: complex characters and resolvability without explosive radiations. Mol. Biol. Evol. 24: 269-280. PMid:17062634   Haddrath O and Baker AJ (2001). Complete mitochondrial DNA genome sequences of extinct birds: ratite phylogenetics and the vicariance biogeography hypothesis. Proc. Biol. Sci. 268: 939-945. PMid:11370967 PMCid:1088691   Hall AT (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids Symp. Ser. 41: 95-98.   Harlid A, Janke A and Arnason U (1998). The complete mitochondrial genome of Rhea americana and early avian divergences. J. Mol. Evol. 46: 669-679. PMid:9608049   Harrison GL, McLenachan PA, Phillips MJ, Slack KE, et al. (2004). Four new avian mitochondrial genomes help get to basic evolutionary questions in the late cretaceous. Mol. Biol. Evol. 21: 974-983. PMid:14739240   Hazkani-Covo E, Zeller RM and Martin W (2010). Molecular poltergeists: mitochondrial DNA copies (numts) in sequenced nuclear genomes. PLoS Genet. 6: e1000834. PMid:20168995 PMCid:2820518   Howard R and Moore A (2003). The Howard and Moore Complete Checklist of the Birds of the World. 3rd edn. Christopher Helm, London.   L'Abbé D, Duhaime JF, Lang BF and Morais R (1991). The transcription of DNA in chicken mitochondria initiates from one major bidirectional promoter. J. Biol. Chem. 266: 10844-10850. PMid:1710214   Larkin MA, Blackshields G, Brown NP, Chenna R, et al. (2007). Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948. PMid:17846036   Livezey BC and Zusi RL (2007). Higher-order phylogeny of modern birds (Theropoda, Aves: Neornithes) based on comparative anatomy. II. Analysis and discussion. Zool. J. Linn. Soc. 149: 1-95. PMid:18784798 PMCid:2517308   Lohse M, Drechsel O and Bock R (2007). OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes. Curr. Genet. 52: 267-274. PMid:17957369   Lowe TM and Eddy SR (1997). tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964. PMid:9023104 PMCid:146525   Mindell DP, Sorenson MD and Dimcheff DE (1998). Multiple independent origins of mitochondrial gene order in birds. Proc. Natl. Acad. Sci. U. S. A. 95: 10693-10697. PMid:9724766 PMCid:27957   Moore WS (1995). Inferring phylogenies from mtDNA variation: mitochondrial-gene trees versus nuclear-gene trees. Evolution 49: 718-726.   Morgan-Richards M, Trewick SA, Bartosch-Harlid A, Kardailsky O, et al. (2008). Bird evolution: testing the Metaves clade with six new mitochondrial genomes. BMC Evol. Biol. 8: 20. PMid:18215323 PMCid:2259304   Nishibori M, Hayashi T, Tsudzuki M, Yamamoto Y, et al. (2001). Complete sequence of the Japanese quail (Coturnix japonica) mitochondrial genome and its genetic relationship with related species. Anim. Genet. 32: 380-385. PMid:11736810   Nishibori M, Shimogiri T, Hayashi T and Yasue H (2005). Molecular evidence for hybridization of species in the genus Gallus except for Gallus varius. Anim Genet. 36: 367-375. PMid:16167978   Paton T, Haddrath O and Baker AJ (2002). Complete mitochondrial DNA genome sequences show that modern birds are not descended from transitional shorebirds. Proc. Biol. Sci. 269: 839-846. PMid:11958716 PMCid:1690957   Pereira SL, Johnson KP, Clayton DH and Baker AJ (2007). Mitochondrial and nuclear DNA sequences support a Cretaceous origin of Columbiformes and a dispersal-driven radiation in the Paleocene. Syst. Biol. 56: 656-672. PMid:17661233   Perna NT and Kocher TD (1995). Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes. J. Mol. Evol. 41: 353-358. PMid:7563121   Pratt RC, Gibb GC, Morgan-Richards M, Phillips MJ, et al. (2009). Toward resolving deep neoaves phylogeny: data, signal enhancement, and priors. Mol. Biol. Evol. 26: 313-326. PMid:18981298   Randi E and Lucchini V (1998). Organization and evolution of the mitochondrial DNA control region in the avian genus Alectoris. J. Mol. Evol. 47: 449-462. PMid:9767690   Rokas A, Williams BL, King N and Carroll SB (2003). Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature 425: 798-804. PMid:14574403   Saccone C, Pesole G and Sbisa E (1991). The main regulatory region of mammalian mitochondrial DNA: structure-function model and evolutionary pattern. J. Mol. Evol. 33: 83-91. PMid:1909377   Sambrook J and Russell DW (2001). Molecular Cloning: A Laboratory Manual. 3rd edn. Cold Spring Harbor Laboratory Press, New York.   San Mauro D, Garcia-Paris M and Zardoya R (2004). Phylogenetic relationships of discoglossid frogs (Amphibia: Anura: Discoglossidae) based on complete mitochondrial genomes and nuclear genes. Gene 343: 357-366. PMid:15588590   Sbisa E, Tanzariello F, Reyes A, Pesole G, et al. (1997). Mammalian mitochondrial D-loop region structural analysis: identification of new conserved sequences and their functional and evolutionary implications. Gene 205: 125-140.   Shadel GS and Clayton DA (1997). Mitochondrial DNA maintenance in vertebrates. Annu. Rev. Biochem. 66: 409-435. PMid:9242913   Shen X, Tian M, Liu Z, Cheng H, et al. (2009). Complete mitochondrial genome of the sea cucumber Apostichopus japonicus (Echinodermata: Holothuroidea): the first representative from the subclass Aspidochirotacea with the echinoderm ground pattern. Gene 439: 79-86. PMid:19306915   Slack KE, Janke A, Penny D and Arnason U (2003). Two new avian mitochondrial genomes (penguin and goose) and a summary of bird and reptile mitogenomic features. Gene 302: 43-52. PMid:12527195   Slack KE, Jones CM, Ando T, Harrison GL, et al. (2006). Early penguin fossils, plus mitochondrial genomes, calibrate avian evolution. Mol. Biol. Evol. 23: 1144-1155. PMid:16533822   Slack KE, Delsuc F, McLenachan PA, Arnason U, et al. (2007). Resolving the root of the avian mitogenomic tree by breaking up long branches. Mol. Phylogenet. Evol. 42: 1-13. PMid:16854605   Walberg MW and Clayton DA (1981). Sequence and properties of the human KB cell and mouse L cell D-loop regions of mitochondrial DNA. Nucleic Acids Res. 9: 5411-5421. PMid:7301592 PMCid:327529   Wang C, Chen Q, Lu G, Xu J, et al. (2008). Complete mitochondrial genome of the grass carp (Ctenopharyngodon idella, Teleostei): insight into its phylogenic position within Cyprinidae. Gene 424: 96-101. PMid:18706492   Wolstenholme DR (1992). Animal mitochondrial DNA: structure and evolution. Int. Rev. Cytol. 141: 173-216.   Wyman SK, Jansen RK and Boore JL (2004). Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20: 3252-3255. PMid:15180927   Xia X and Xie Z (2001). DAMBE: software package for data analysis in molecular biology and evolution. J. Hered. 92: 371-373. PMid:11535656