Publications
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“Precision of distances and ordering of microsatellite markers in consensus linkage maps of chromosomes 1, 3 and 4 from two reciprocal chicken populations using bootstrap sampling”, vol. 9, pp. 1357-1376, 2010.
, Abasht B, Dekkers JC and Lamont SJ (2006). Review of quantitative trait loci identified in the chicken. Poult. Sci. 85: 2079-2096.
PMid:17135661
Aerts J, Crooijmans R, Cornelissen S, Hemmatian K, et al. (2003). Integration of chicken genomic resources to enable whole-genome sequencing. Cytogenet. Genome Res. 102: 297-303.
http://dx.doi.org/10.1159/000075766
PMid:14970720
Ambo M, Campos RLR, Moura ASAMT, Boschiero C, et al. (2008). Genetic linkage maps of chicken chromosomes 6, 7, 8, 11 and 13 from a Brazilian resource population. Sci. Agric. 65: 447-452.
http://dx.doi.org/10.1590/S0103-90162008000500001
Ambo M, Moura AS, Ledur MC, Pinto LF, et al. (2009). Quantitative trait loci for performance traits in a broiler x layer cross. Anim. Genet. 40: 200-208.
http://dx.doi.org/10.1111/j.1365-2052.2008.01824.x
PMid:19170675
Buetow KH (1991). Influence of aberrant observations on high-resolution linkage analysis outcomes. Am. J. Hum. Genet. 49: 985-994.
PMid:1928104 PMCid:1683261
Buetow KH and Chakravarti A (1987). Multipoint gene mapping using seriation. I. General methods. Am. J. Hum. Genet. 41: 180-188.
PMid:3475978 PMCid:1684223
Bumstead N and Palyga J (1992). A preliminary linkage map of the chicken genome. Genomics 13: 690-697.
http://dx.doi.org/10.1016/0888-7543(92)90143-G
Campos RL, Nones K, Ledur MC, Moura AS, et al. (2009). Quantitative trait loci associated with fatness in a broiler-layer cross. Anim. Genet. 40: 729-736.
http://dx.doi.org/10.1111/j.1365-2052.2009.01910.x
PMid:19466938
Darvasi A and Soller M (1992). Selective genotyping for determination of linkage between a marker locus and a quantitative trait locus. Theor. Appl. Genet. 85: 353-359.
Daw EW, Thompson EA and Wijsman EM (2000). Bias in multipoint linkage analysis arising from map misspecification. Genet. Epidemiol. 19: 366-380.
http://dx.doi.org/10.1002/1098-2272(200012)19:4<366::AID-GEPI8>3.0.CO;2-F
Efron B and Tibshirani RJ (1993). An Introduction to the Bootstrap. 1st edn. Chapman and Hall/CRC, New York.
Figueiredo EAP, Rosa PS, Scheuermann GN, Jaenisch FRF, et al. (2003a). Genetic gain in body weight feed conversion and carcass traits in White Plymouth Rock broiler strain Embrapa 021. Proceedings of the IX World Conference on Animal Production, Porto Alegre.
Figueiredo EAP, Schmidt GS, Ledur MC and Avila VS (2003b). Genetic gain in egg production and egg weight in White Legorn Embrapa 011. Proceedings of the IX World Conference on Animal Production, Porto Alegre.
Fishelson M and Geiger D (2002). Exact genetic linkage computations for general pedigrees. Bioinformatics 18 (Suppl 1): S189-S198.
http://dx.doi.org/10.1093/bioinformatics/18.suppl_1.S189
PMid:12169547
Green P, Falls K and Crooks S (1990). Documentation for CRIMAP, version 2.4. Washington University School of Medicine, St. Louis. Available at [http://linkage.rockefeller.edu/soft/crimap/]. Accessed October 20, 2009.
Groenen MA, Crooijmans RP, Veenendaal A, Cheng HH, et al. (1998). A comprehensive microsatellite linkage map of the chicken genome. Genomics 49: 265-274.
http://dx.doi.org/10.1006/geno.1998.5225
PMid:9598314
Groenen MA, Cheng HH, Bumstead N, Benkel BF, et al. (2000). A consensus linkage map of the chicken genome. Genome Res. 10: 137-147.
PMid:10645958 PMCid:310508
Groenen MA, Wahlberg P, Foglio M, Cheng HH, et al. (2009). A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate. Genome Res. 19: 510-519.
http://dx.doi.org/10.1101/gr.086538.108
PMid:19088305 PMCid:2661806
Hackett CA and Broadfoot LB (2003). Effects of genotyping errors, missing values and segregation distortion in molecular marker data on the construction of linkage maps. Heredity 90: 33-38.
http://dx.doi.org/10.1038/sj.hdy.6800173
PMid:12522423
Halpern J and Whittemore AS (1999). Multipoint linkage analysis. A cautionary note. Hum. Hered. 49: 194-196.
http://dx.doi.org/10.1159/000022874
PMid:10436380
Hillier LW, Miller W, Birney E and Warren W (2004). Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432: 695-716.
http://dx.doi.org/10.1038/nature03154
PMid:15592404
Jennen DG, Vereijken AL, Bovenhuis H, Crooijmans RM, et al. (2005). Confirmation of quantitative trait loci affecting fatness in chickens. Genet. Sel. Evol. 37: 215-228.
http://dx.doi.org/10.1186/1297-9686-37-3-215
PMid:16194525 PMCid:2697231
Kosambi DD (1944). The estimation of map distance from recombination values. Ann. Eugenics 12: 172-175.
Levin I, Santangelo L, Cheng H, Crittenden LB, et al. (1994). An autosomal genetic linkage map of the chicken. J. Hered. 85: 79-85.
PMid:7910177
Liu BH (1998). Statistical Genomics: Linkage, Mapping and QTL Analysis. CRC Press, Boca Raton.
Matise TC, Chen F, Chen W, De La Vega FM, et al. (2007). A second-generation combined linkage physical map of the human genome. Genome Res. 17: 1783-1786.
http://dx.doi.org/10.1101/gr.7156307
PMid:17989245 PMCid:2099587
Mollinari M, Margarido GR, Vencovsky R and Garcia AA (2009). Evaluation of algorithms used to order markers on genetic maps. Heredity 103: 494-502.
http://dx.doi.org/10.1038/hdy.2009.96
PMid:19639011
Nones K, Ledur MC, Ruy DC, Baron EE, et al. (2005). Genetic linkage map of chicken chromosome 1 from a Brazilian resource population. Sci. Agric. 62: 12-17.
http://dx.doi.org/10.1590/S0103-90162005000100003
Nones K, Ledur MC, Ruy DC, Baron EE, et al. (2006). Mapping QTLs on chicken chromosome 1 for performance and carcass traits in a broiler x layer cross. Anim. Genet. 37: 95-100.
http://dx.doi.org/10.1111/j.1365-2052.2005.01387.x
PMid:16573522
Ren C, Lee MK, Yan B, Ding K, et al. (2003). A BAC-based physical map of the chicken genome. Genome Res. 13: 2754-2758.
http://dx.doi.org/10.1101/gr.1499303
PMid:14656976 PMCid:403818
Rosário MF, Ledur MC, Moura ASAMT, Coutinho LL, et al. (2009). Genotypic characterization of microsatellite markers in broiler and layer selected chicken lines and their reciprocal F1s. Sci. Agri. 66: 150-158.
Schmid M, Nanda I, Guttenbach M, Steinlein C, et al. (2000). First report on chicken genes and chromosomes 2000. Cytogenet. Cell Genet. 90: 169-218.
http://dx.doi.org/10.1159/000056772
PMid:11124517
Schmid M, Nanda I, Hoehn H, Schartl M, et al. (2005). Second report on chicken genes and chromosomes 2005. Cytogenet. Genome Res. 109: 415-479.
http://dx.doi.org/10.1159/000084205
PMid:15905640
Snelling WM, Casas E, Stone RT, Keele JW, et al. (2005). Linkage mapping bovine EST-based SNP. BMC Genomics 6: 74.
http://dx.doi.org/10.1186/1471-2164-6-74
PMid:15943875 PMCid:1166549
Stewart WC and Thompson EA (2006). Improving estimates of genetic maps: a maximum likelihood approach. Biometrics 62: 728-734.
http://dx.doi.org/10.1111/j.1541-0420.2006.00532.x
PMid:16984314
Voorrips RE (2002). MapChart: software for the graphical presentation of linkage maps and QTLs. J. Hered. 93: 77-78.
http://dx.doi.org/10.1093/jhered/93.1.77
PMid:12011185
Wallis JW, Aerts J, Groenen MA, Crooijmans RP, et al. (2004). A physical map of the chicken genome. Nature 432: 761-764.
http://dx.doi.org/10.1038/nature03030
PMid:15592415
Wang J, He X, Ruan J, Dai M, et al. (2005). ChickVD: a sequence variation database for the chicken genome. Nucleic Acids Res. 33: D438-D441.
http://dx.doi.org/10.1093/nar/gki092
PMid:15608233 PMCid:540046
Wong GK, Liu B, Wang J, Zhang Y, et al. (2004). A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. Nature 432: 717-722.
http://dx.doi.org/10.1038/nature03156
PMid:15592405 PMCid:2263125
Xu S (2008). Quantitative trait locus mapping can benefit from segregation distortion. Genetics 180: 2201-2208.
http://dx.doi.org/10.1534/genetics.108.090688
PMid:18957707 PMCid:2600952