Publications

Bertan I, Carvalho FIF, Oliveira AC, Benin G, et al. (2009). Morphological, pedigree, and molecular distances and their association with hybrid wheat performance. Pesq. Agropec. Bras. 44: 155-163. http://dx.doi.org/10.1590/S0100-204X2009000200007   Crossa J and Franco J (2004). Statistical methods for classifying genotypes. Euphytica 137: 19-37. http://dx.doi.org/10.1023/B:EUPH.0000040500.86428.e8   Cruz CD (2008). Programa GENES: Diversidade Genética. Universidade Federal de Viçosa, Viçosa.   Daher RF, Pereira MG, Tupinambá EA, Amaral Júnior AT, et al. (2002). Assessment of coconut tree genetic divergence by compound sample RAPD marker analysis. Crop Breed. Appl. Biotechnol. 3: 431-438.   Doyle JJ and Doyle JL (1990). Isolation of plant DNA from fresh tissue. Focus 12: 13-15.   Eustice M, Yu Q, Lai CW, Hou S, et al. (2008). Development and application of microsatellite markers for genomic analysis of papaya. Tree Genet. Genomes 4: 333-341. http://dx.doi.org/10.1007/s11295-007-0112-2   Fonseca RM, Lopes R, Barros WS, Lopes MTG, et al. (2008). Morphologic Characterization and genetic diversity of Capsicum chinense Jacq. accessions along the upper Rio Negro - Amazonas. Crop Breed. Appl. Biotechnol. 8: 187-194.   Franco F, Crossa J, Ribaut JM, Betran J, et al. (2001). A method for combining molecular markers and phenotypic attributes for classifying plant genotypes. Theor. Appl. Genet. 103: 944-952. http://dx.doi.org/10.1007/s001220100641   Gonçalves LS, Rodrigues R, Amaral AT Jr, Karasawa M, et al. (2008). Comparison of multivariate statistical algorithms to cluster tomato heirloom accessions. Genet. Mol. Res. 7: 1289-1297. http://dx.doi.org/10.4238/vol7-4gmr526 PMid:19065764   Gower JC (1971). A General coefficient of similarity and some of its properties. Biometrics 27: 857-871. http://dx.doi.org/10.2307/2528823   Jobin-Decor MP, Graham GC, Henr RJ and Drew RA (1997). RAPD and isozyme analysis of genetic relationships between Carica papaya and wild relatives. Genet. Resour. Crop Evol. 44: 471-477. http://dx.doi.org/10.1023/A:1008644901727   Kim MS, Moore PH, Zee F, Fitch MM, et al. (2002). Genetic diversity of Carica papaya as revealed by AFLP markers. Genome 45: 503-512. http://dx.doi.org/10.1139/g02-012 PMid:12033619   Kumar S, Nei M, Dudley J and Tamura K (2009). MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief. Bioinform. 9: 299-306. http://dx.doi.org/10.1093/bib/bbn017 PMid:18417537 PMCid:2562624   Kyndt T, Romeijn-Peeters E, Van Droogenbroeck B, Romero-Motochi JP, et al. (2005). Species relationships in the genus Vasconcellea (Caricaceae) based on molecular and morphological evidence. Am. J. Bot. 92: 1033-1044. http://dx.doi.org/10.3732/ajb.92.6.1033 PMid:21652488   Lefebvre V, Goffinet B, Chauvet JC, Caromel B, et al. (2001). Evaluation of genetic distances between pepper inbred lines for cultivar protection purposes: comparison of AFLP, RAPD and phenotypic data. Theor. Appl. Genet. 103: 741-750. http://dx.doi.org/10.1007/s001220051705   Mantel N (1967). The detection of disease clustering and a generalized regression approach. Cancer Res. 27: 209-220. PMid:6018555   Marić S, Bolarić S, Martinčić J, Pejić I, et al. (2004). Genetic diversity of hexaploid wheat cultivars estimated by RAPD markers, morphological traits and coefficients of parentage. Plant Breed. 123: 366-369. http://dx.doi.org/10.1111/j.1439-0523.2004.00956.x   Mattos LA, Amorim EP, Amorim VBO, Cohen KO, et al. (2010). Agronomical and molecular characterization of banana germoplasm. Pesq. Agropec. Bras. 45: 146-154. http://dx.doi.org/10.1590/S0100-204X2010000200005   Ming R, Yu Q and Moore PH (2007). Sex determination in papaya. Semin. Cell Dev. Biol. 18: 401-408. http://dx.doi.org/10.1016/j.semcdb.2006.11.013 PMid:17353137   Mohammadi SA and Prasanna BM (2003). Analysis of genetic diversity in crop plants - Salient statistical tools and considerations. Crop Sci. 43: 1235-1248. http://dx.doi.org/10.2135/cropsci2003.1235   Ocampo J, D'Eeckenbrugge GC, Bruyère S, Bellaire LL, et al. (2006). Organization of morphological and genetic diversity of Caribbean and Venezuelan papaya germplasma. Fruit 61: 25-37. http://dx.doi.org/10.1051/fruits:2006003   Oliveira EJ, Silva AS, Carvalho FM, Santos LF, et al. (2010). Polymorphic microsatellite marker set for Carica papaya L. and its use in molecular-assisted selection. Euphytica 173: 279-287. http://dx.doi.org/10.1007/s10681-010-0150-y   Parasnis AS, Ramakrishna W, Chowdari KV, Gupta VS, et al. (1999). Microsatellite (GATA) n reveals sex-specific differences in papaya. Theor. Appl. Genet. 99: 1047-1052. http://dx.doi.org/10.1007/s001220051413   Peakall R and Smouse P (2009). GenAlEx Tutorials-Part 1: Introduction to Population Genetic Analysis. Australian National University, Australia. PMCid:2690036   R Development Core Team (2006). A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna.   Reif JC, Melchinger AE and Frisch M (2005). Genetical and mathematical properties of similarity and dissimilarity coefficients applied in plant breeding and seed bank management. Crop Sci. 45: 1-7. http://dx.doi.org/10.2135/cropsci2005.0001   Rocha MC, Gonçalves LSA, Rodrigues R, Silva PRA, et al. (2010). Uso do algoritmo de Gower na determinação da divergência genética entre acessos de tomateiro do grupo cereja. Acta Sci. 32: 423-431.   Roy JK, Lakshmikumaran MS, Balyan HS and Gupta PK (2004). AFLP-based genetic diversity and its comparison with diversity based on SSR, SAMPL, and phenotypic traits in bread wheat. Biochem. Genet. 42: 43-59. http://dx.doi.org/10.1023/B:BIGI.0000012143.48298.71 PMid:15068338   Saitou N and Nei M (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425. PMid:3447015   SAS Institute Inc. (1992). Statistical Analysis System. Release 6.12. SAS, Cary.   Saxena S, Chandra R, Srivastava AP, Mishra M, et al. (2005). Analysis of genetic diversity among papaya cultivars using Single Primer Amplification Reaction (SPAR) methods. J. Hortic. Sci. Biotech. 80: 291-296.   Silva FF, Pereira MG, Campos WF and Damasceno Júnior PC (2007). DNA marker-assisted sex conversion in elite papaya genotype (Carica papaya L.). Crop Breed. Appl. Biotechnol. 7: 52-58.   Silva FF, Pereira MG, Ramos HCC, Damasceno Júnior PC, et al. (2008). Estimation of genetic parameters related to morphoagronomic and fruit quality traits of papaya. Crop Breed. Appl. Biotechnol. 8: 65-73.   Sokal RR and Rohlf FJ (1962). The comparison of dendrograms by objective methods. Taxon 11: 33-40. http://dx.doi.org/10.2307/1217208   Sudre CP, Goncalves LS, Rodrigues R, do Amaral Junior AT, et al. (2010). Genetic variability in domesticated Capsicum spp as assessed by morphological and agronomic data in mixed statistical analysis. Genet. Mol. Res. 9: 283-294. http://dx.doi.org/10.4238/vol9-1gmr698 PMid:20198584   Van Droogenbroeck B, Breyne P, Goetghebeur P, Romeijn-Peeters E, et al. (2002). AFLP analysis of genetic relationships among papaya and its wild relatives (Caricaceae) from Ecuador. Theor. Appl. Genet. 105: 289-297. http://dx.doi.org/10.1007/s00122-002-0983-4 PMid:12582531   Venkovsky R (1987). Herança Quantitativa. In: Melhoramento e Produção do Milho. (Paterniani E and Viegas GP, eds.). Fundação Cargill, Campinas, 135-214.   Vieira EA, Carvalho FIF, Bertan I, Kopp MM, et al. (2007). Association between genetic distances in wheat (Triticum aestivum L.) as estimated by AFLP and morphological markers. Genet. Mol. Biol. 30: 392-399. http://dx.doi.org/10.1590/S1415-47572007000300016   Vitória AP, Souza Filho GA, Bressan-Smith R, Pinto FO, et al. (2004). DNA fingerprint of Carica papaya L. genotypes by RAPD markers. J. New Seeds 6: 1-10. http://dx.doi.org/10.1300/J153v06n01_04   Williams JG, Kubelik AR, Livak KJ, Rafalski JA, et al. (1990). DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18: 6531-6535. http://dx.doi.org/10.1093/nar/18.22.6531 PMid:1979162 PMCid:332606

Arumuganathan K and Earle ED (1991). Nuclear DNA content of some important plant species. Plant Mol. Biol. Rep. 9: 208-218. http://dx.doi.org/10.1007/BF02672069   Benchimol LL, Souza CL Jr and Souza AP (2005). Microsatellite-assisted backcross selection in maize. Genet. Mol. Biol. 28: 789-797. http://dx.doi.org/10.1590/S1415-47572005000500022   Collard BCY, Jahufer MZZ, Brouwer JB and Pang ECK (2005). An introduction to markers, quantitative trait loci (QTL) mapping and marker-assisted selection for crop improvement: the basic concepts. Euphytica 142: 169-196. http://dx.doi.org/10.1007/s10681-005-1681-5   Conover RA, Litz RE and Malo SE (1986). Cariflora, a Papaya for South Florida with Tolerance to Papaya Ringspot Virus. Agricultural Experiment Station, University of Florida (Circular, 329), Florida.   Cruz CD (2008). Programa GENES: Diversidade Genética. Universidade Federal de Viçosa, Viçosa.   Daher RF, Pereira MG, Tupinambá EA, Amaral Júnior AT, et al. (2002). Assessment of coconut tree genetic divergence by compound sample RAPD marker analysis. Crop Breed. Appl. Biotechnol. 3: 431-438.   Damasceno Junior PC, Costa FR, Pereira TNS, Freitas Neto M, et al. (2009). Karyotype determination in three Caricaceae species emphasizing the cultivated form (C. papaya L.). Caryologia 62: 10-15.   Davies J, Berzonsky WA and Leach GD (2006). A comparison of marker-assisted and phenotypic selection for high grain protein content in spring wheat. Euphytica 152: 117-134. http://dx.doi.org/10.1007/s10681-006-9185-5   Doyle JJ and Doyle JL (1990). Isolation of plant DNA from fresh tissue. Focus 12: 13-15.   Faleiro FG, Ragagnin VA, Moreira MA and de Barros EG (2004). Use of molecular markers to accelerate the breeding of common bean lines resistant to rust and anthracnose. Euphytica 138: 213-218. http://dx.doi.org/10.1023/B:EUPH.0000047080.80405.72   FAOSTAT (2009). Food and Agriculture Organization of the United Nations Statistical Database. Available at [http://faostat.fao.org/site/567/default.aspx#ancor]. Accessed August 20, 2009.   Gupta PK and Varshney RK (2000). The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat. Euphytica 113: 163-185. http://dx.doi.org/10.1023/A:1003910819967   Hospital F and Charcosset A (1997). Marker-assisted introgression of quantitative trait loci. Genetics 147: 1469-1485. PMid:9383086 PMCid:1208267   Hospital F, Moreau L, Lacoudre H, Charcosset A, et al. (1997). More on the efficiency of marker-assisted selection. Theor. Appl. Genet. 95: 1181-1189. http://dx.doi.org/10.1007/s001220050679   Knapp SJ (1997). Marker assisted selection as a strategy for increasing the probability of selection superior genotypes. Crop Sci. 38: 1164-1174. http://dx.doi.org/10.2135/cropsci1998.0011183X003800050009x   Kuchel H, Ye G, Fox R and Jefferies S (2005). Genetic and economic analysis of a targeted marker-assisted wheat breeding strategy. Mol. Breed. 16: 67-78. http://dx.doi.org/10.1007/s11032-005-4785-7   Leal AA, Mangolin CA, do Amaral Júnior AT, Gonçalves LS, et al. (2010). Efficiency of RAPD versus SSR markers for determining genetic diversity among popcorn lines. Genet. Mol. Res. 9: 9-18. http://dx.doi.org/10.4238/vol9-1gmr692 PMid:20082266   Lewis RS and Kernodle SP (2009). A method for accelerated trait conversion in plant breeding. Theor. Appl. Genet. 118: 1499-1508. http://dx.doi.org/10.1007/s00122-009-0998-1 PMid:19266176   Liu Z, Moore PH, Ma H, Ackerman CM, et al. (2004). A primitive Y-chromosome in papaya marks incipient sex chromosome evolution. Nature 427: 348-352. http://dx.doi.org/10.1038/nature02228 PMid:14737167   Marin SLM, Pereira MG, Amaral Júnior AT, Martelleto LAP, et al. (2006). Heterosis in papaya hybrids from partial diallel of 'Solo' and 'Formosa' parents. Crop Breed. Appl. Biotechnol. 6: 24-29.   Moore PH and Ming R (2008). Papaya genome: a model for tropical fruit trees and beyond. Trop. Plant Biol. 1: 179-180. http://dx.doi.org/10.1007/s12042-008-9025-y   Oliveira EJ, Silva AS, Carvalho AM, Santos LF, et al. (2010). Polymorphic microsatellite marker set for Carica papaya L. and its use in molecular-assisted selection. Euphytica 173: 279-287. http://dx.doi.org/10.1007/s10681-010-0150-y   Oliveira LK, Melo LC, Brondani C, Peloso MJ, et al. (2008). Backcross assisted by microsatellite markers in common bean. Genet. Mol. Res. 7: 1000-1010. http://dx.doi.org/10.4238/vol7-4gmr478 PMid:19048479   Pérez OJ, Dambier D, Ollitrault P, Coppens DG, et al. (2006). Microsatellite markers in Carica papaya L.: isolation, characterization and transferability to Vasconcellea species. Mol. Ecol. Notes 6: 212-217. http://dx.doi.org/10.1111/j.1471-8286.2006.01197.x   Santos SC, Ruggiero C, Silva CLSP and Lemos GM (2003). A microsatellite library for Carica papaya L. cv Sunrise Solo. Rev. Bras. Frutic. 25: 263-267. http://dx.doi.org/10.1590/S0100-29452003000200020   Schmierer DA, Kandemir N, Kudma DA, Jone BL, et al. (2004). Molecular marker-assisted selection for enhanced yield in malting barley. Mol. Breed. 14: 463-473. http://dx.doi.org/10.1007/s11032-004-0903-1   Silva FF, Pereira MG, Campos WF, Damasceno Júnior PC, et al. (2007a). Monitoring of the genetic variability in papaya parent 'Formosa' of 'UENF/CALIMAN 01' hybrid via RAPD. Crop Breed. Appl. Biotechnol. 7: 36-42.   Silva FF, Pereira MG, Campos WF, Damasceno Júnior PC, et al. (2007b). DNA marker-assisted sex conversion in elite papaya genotype (Carica papaya L.). Crop Breed. Appl. Biotechnol. 7: 52-58.   Siqueira WJ, Fonseca MIS and Sondhal MR (1988). Regeneration of Lycopersicon esculentum x L. peruvianum hybrid plants from two year old callus culture. Bragantia 47: 1-8. http://dx.doi.org/10.1590/S0006-87051988000100001   Storey WB (1953). Genetics of the papaya. J. Heredity 44: 70-78.   Tanksley SD (1983). Molecular markers in plant breeding. Plant Mol. Biol. Rep. 1: 3-8. http://dx.doi.org/10.1007/BF02680255   Visscher PM, Haley CS and Thompson R (1996). Marker-assisted introgression in backcross breeding programs. Genetics 144: 1923-1932. PMid:8978075 PMCid:1207739   Wang J, Chen C, Na JK, Yu Q, et al. (2008). Genome-wide comparative analyses of microsatellites in papaya. Trop. Plant Biol. 1: 278-292. http://dx.doi.org/10.1007/s12042-008-9024-z   Xi ZY, He FH, Zeng RZ, Zang ZM, et al. (2008). Characterization of donor genome contents of backcross progenies detected by SSR markers in rice. Euphytica 3: 369-377. http://dx.doi.org/10.1007/s10681-007-9547-7   Young ND and Tanksley SD (1989). RFLP analysis of the size of chromosomal segments retained around the Tm-2 locus of tomato during backcross breeding. Theor. Appl. Genet. 3: 353-359. http://dx.doi.org/10.1007/BF00305828   Yu Q, Hou S, Feltus FA, Jones MR, et al. (2008). Low X/Y divergence in four pairs of papaya sex-linked genes. Plant J. 53: 124-132. http://dx.doi.org/10.1111/j.1365-313X.2007.03329.x PMid:17973896