Publications

Alberola TM, Bori L and de Frutos R (1997). Structural analysis of Drosophila subobscura gypsy elements (gypsyDs). Genetica 100: 39-48. doi:10.1023/A:1018392404206 PMid:9440257 Bagni C, Bray S, Gogos JA, Kafatos FC, et al. (2002). The Drosophila zinc finger transcription factor CF2 is a myogenic marker downstream of MEF2 during muscle development. Mech. Dev. 117: 265-268. doi:10.1016/S0925-4773(02)00176-4 Bartolome C, Bello X and Maside X (2009). Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes. Genome Biol. 10: R22. doi:10.1186/gb-2009-10-2-r22 PMid:19226459    PMCid:2688281 Benson G (1999). Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27: 573-580. doi:10.1093/nar/27.2.573 PMid:9862982    PMCid:148217 Capy P, Vitalis R, Langin T, Higuet D, et al. (1996). Relationships between transposable elements based upon the integrase-transposase domains: is there a common ancestor? J. Mol. Evol. 42: 359-368. doi:10.1007/BF02337546 PMid:8661997 Capy P, Bazin C, Higuet D and Langin T (1997). Dynamic and Evolution of Transposable Elements. R.G. Landes Company, Austin. Champ PC, Maurice S, Vargason JM, Camp T, et al. (2004). Distributions of Z-DNA and nuclear factor I in human chromosome 22: a model for coupled transcriptional regulation. Nucleic Acids Res. 32: 6501-6510. doi:10.1093/nar/gkh988 PMid:15598822    PMCid:545456 Dej KJ, Gerasimova T, Corces VG and Boeke JD (1998). A hotspot for the Drosophila gypsy retroelement in the ovo locus. Nucleic Acids Res. 26: 4019-4025. doi:10.1093/nar/26.17.4019 PMid:9705514    PMCid:147786 Ha SC, Lowenhaupt K, Rich A, Kim YG, et al. (2005). Crystal structure of a junction between B-DNA and Z-DNA reveals two extruded bases. Nature 437: 1183-1186. doi:10.1038/nature04088 PMid:16237447 Heath BD, Butcher RD, Whitfield WG and Hubbard SF (1999). Horizontal transfer of Wolbachia between phylogenetically distant insect species by a naturally occurring mechanism. Curr. Biol. 9: 313-316. doi:10.1016/S0960-9822(99)80139-0 Herédia F, Loreto EL and Valente VL (2004). Complex evolution of gypsy in Drosophilid species. Mol. Biol. Evol. 21: 1831-1842. doi:10.1093/molbev/msh183 PMid:15175416 Hsu T, Bagni C, Sutherland JD and Kafatos FC (1996). The transcriptional factor CF2 is a mediator of EGF-R-activated dorsoventral patterning in Drosophila oogenesis. Genes Dev. 10: 1411-1421. doi:10.1101/gad.10.11.1411 Inouye S, Yuki S and Saigo K (1986). Complete nucleotide sequence and genome organization of a Drosophila transposable genetic element, 297. Eur. J. Biochem. 154: 417-425. doi:10.1111/j.1432-1033.1986.tb09414.x PMid:2417839 Jowett T (1986). Preparation of Nucleic Acids. In: Drosophila: a Practical Approach (Roberts DB, ed.). IRL Press, Washington DC, 275-286. Kohany O, Gentles AJ, Hankus L and Jurka J (2006). Annotation, submission and screening of repetitive elements in Repbase: repbasesubmitter and censor. BMC Bioinformatics 7: 474. doi:10.1186/1471-2105-7-474 PMid:17064419    PMCid:1634758 Kotnova AP, Glukhov IA, Karpova NN, Salenko VB, et al. (2007). Evidence for recent horizontal transfer of gypsy-homologous LTR-retrotransposon gtwin into Drosophila erecta followed by its amplification with multiple aberrations. Gene 396: 39-45. doi:10.1016/j.gene.2007.02.019 PMid:17459613 Kumar S, Nei M, Dudley J and Tamura K (2008). MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief. Bioinform. 9: 299-306. doi:10.1093/bib/bbn017 PMid:18417537    PMCid:2562624 Lachaise D, Cariou ML, David JR, Lemeunier F, et al. (1988). Historical Biogeography of the Drosophila melanogaster Species Subgroup. In: Evolutionary Biology. Vol. 22 (Hecht MK, Wallace B and Prance GT, eds.). Plenum Press, New York, 159-225. Leblanc P, Desset S, Dastugue B and Vaury C (1997). Invertebrate retroviruses: ZAM a new candidate in D. melanogaster. EMBO J. 16: 7521-7531. doi:10.1093/emboj/16.24.7521 PMid:9405380    PMCid:1170351 Llorens JV, Clark JB, Martinez-Garay I, Soriano S, et al. (2008). Gypsy endogenous retrovirus maintains potential infectivity in several species of Drosophilids. BMC Evol. Biol. 8: 302. doi:10.1186/1471-2148-8-302 PMid:18976468    PMCid:2585583 Marlor RL, Parkhurst SM and Corces VG (1986). The Drosophila melanogaster gypsy transposable element encodes putative gene products homologous to retroviral proteins. Mol. Cell Biol. 6: 1129-1134. PMid:3023871    PMCid:367623 Minervini CF, Marsano RM, Casieri P, Fanti L, et al. (2007). Heterochromatin protein 1 interacts with 5’UTR of transposable element ZAM in a sequence-specific fashion. Gene 393: 1-10. doi:10.1016/j.gene.2006.12.028 PMid:17343996 Nisha P, Plank JL and Csink AK (2008). Analysis of chromatin structure of genes silenced by heterochromatin in trans. Genetics 179: 359-373. doi:10.1534/genetics.107.084004 PMid:18493059    PMCid:2390615 Pelisson A, Song SU, Prud’homme N, Smith PA, et al. (1994). Gypsy transposition correlates with the production of a retroviral envelope-like protein under the tissue-specific control of the Drosophila flamenco gene. EMBO J. 13: 4401-4411. PMid:7925283    PMCid:395367 Saigo K, Kugimiya W, Matsuo Y, Inouye S, et al. (1984). Identification of the coding sequence for a reverse transcriptase-like enzyme in a transposable genetic element in Drosophila melanogaster. Nature 312: 659-661. doi:10.1038/312659a0 PMid:6209583 Sandelin A, Wasserman WW and Lenhard B (2004). ConSite: web-based prediction of regulatory elements using cross-species comparison. Nucleic Acids Res. 32: W249-W252. doi:10.1093/nar/gkh372 PMid:15215389    PMCid:441510 Savitskaya E, Melnikova L, Kostuchenko M, Kravchenko E, et al. (2006). Study of long-distance functional interactions between Su(Hw) insulators that can regulate enhancer-promoter communication in Drosophila melanogaster. Mol. Cell Biol. 26: 754-761. doi:10.1128/MCB.26.3.754-761.2006 PMid:16428433    PMCid:1347022 Shea MJ, King DL, Conboy MJ, Mariani BD, et al. (1990). Proteins that bind to Drosophila chorion cis-regulatory elements: a new C2H2 zinc finger protein and a C2C2 steroid receptor-like component. Genes Dev. 4: 1128-1140. doi:10.1101/gad.4.7.1128 Song SU, Gerasimova T, Kurkulos M, Boeke JD, et al. (1994). An env-like protein encoded by a Drosophila retroelement: evidence that gypsy is an infectious retrovirus. Genes Dev. 8: 2046-2057. doi:10.1101/gad.8.17.2046 Springer MS and Britten RJ (1993). Phylogenetic relationships of reverse transcriptase and RNase H sequences and aspects of genome structure in the gypsy group of retrotransposons. Mol. Biol. Evol. 10: 1370-1379. PMid:7506345 Stephan W and Li H (2007). The recent demographic and adaptive history of Drosophila melanogaster. Heredity 98: 65-68. doi:10.1038/sj.hdy.6800901 PMid:17006533 Tanaka KK, Bryantsev AL and Cripps RM (2008). Myocyte enhancer factor 2 and chorion factor 2 collaborate in activation of the myogenic program in Drosophila. Mol. Cell Biol. 28: 1616-1629. doi:10.1128/MCB.01169-07 PMid:18160709    PMCid:2258795 Teysset L, Burns JC, Shike H, Sullivan BL, et al. (1998). A Moloney murine leukemia virus-based retroviral vector pseudotyped by the insect retroviral gypsy envelope can infect Drosophila cells. J. Virol. 72: 853-856. PMid:9420299    PMCid:109448 Wang Q, Zhao C, Bai L, Deng X, et al. (2008). Reduction of drosopterin content caused by a 45-nt insertion in Henna pre-mRNA of Drosophila melanogaster. Sci. China C. Life Sci. 51: 702-710. doi:10.1007/s11427-008-0089-6 PMid:18677598 Weber JL and May PE (1989). Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am. J. Hum. Genet. 44: 388-396. PMid:2916582    PMCid:1715443 Wei W and Brennan MD (2001). The gypsy insulator can act as a promoter-specific transcriptional stimulator. Mol. Cell Biol. 21: 7714-7720. doi:10.1128/MCB.21.22.7714-7720.2001 PMid:11604507    PMCid:99942 Yuki S, Inouye S, Ishimaru S and Saigo K (1986). Nucleotide sequence characterization of a Drosophila retrotransposon, 412. Eur. J. Biochem. 158: 403-410. doi:10.1111/j.1432-1033.1986.tb09767.x PMid:2426108 Zhang H, Yu H, Ren J and Qu X (2006). Reversible B/Z-DNA transition under the low salt condition and non-B-form polydApolydT selectivity by a cubane-like europium-L-aspartic acid complex. Biophys. J. 90: 3203-3207. doi:10.1529/biophysj.105.078402 PMid:16473901    PMCid:1432110