Publications

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2011
S. Y. Chee, Devakie, M. N., and Azizah, M. N. Siti, Phylogenetic study and barcoding of the blood cockle, Tegillarca granosa, found on the west coast of peninsular Malaysia using the COI gene, vol. 10, pp. 1237-1244, 2011.
Abbasi AA, Paparidis Z, Malik S, Goode DK, et al. (2007). Human GLI3 intragenic conserved non-coding sequences are tissue-specific enhancers. PLoS One 2: e366. doi:10.1371/journal.pone.0000366 PMid:17426814    PMCid:1838922 Banks SC, Piggott MP, Raftos DA and Beheregaray LB (2006). Microsatellites markers for the Sydney rock oyster, Saccostrea glomerata, a commercially important bivalve in southeastern Australia. Mol. Ecol. Notes 6: 856-858. doi:10.1111/j.1471-8286.2006.01372.x Benson AJ, Merelli DC, Frischer ME, Danforth JM, et al. (2001). Establishment of the green mussel, Perna viridis (Linnaeus 1758), (Mollusca: Mytilidae) on the west coast of Florida. J. Shellfish Res. 20: 21-29. Canapa A, Marota I, Rollo F and Olmo E (1999). The small-subunit rRNA gene sequences of venerids and the phylogeny of Bivalvia. J. Mol. Evol. 48: 463-468. doi:10.1007/PL00006490 PMid:10079284 Colgan DJ, Ponder WF, Beacham E and Macaranas JM (2003). Molecular phylogenetic studies of Gastropoda based on six gene segments representing coding or non-coding and mitochondrial or nuclear DNA. Moll. Res. 23: 123-148. doi:10.1071/MR03002 Cunningham CW (2008). How to use genetic data to distinguish between natural and human-mediated introduction of Littorina littorea to North America. Biol. Invasions 10: 1-6. doi:10.1007/s10530-007-9099-8 Doadrio I and Dominguez O (2004). Phylogenetic relationships within the fish family Goodeidae based on cytochrome b sequence data. Mol. Phylogenet. Evol. 31: 416-430. doi:10.1016/j.ympev.2003.08.022 PMid:15062784 Fajans JS, Baker P, Baker S and Phlips E (2004). Biology, Ecology, and Physiology of the Non-indigenous Asian Green Mussel, Perna viridis (Mytilidae), in the Southeastern United States. 70th Annual Meeting, American Malacological Society, Sanibul Island, Florida. FAO (Food and Agricultural Organization) (2006). Basic Bivalve Biology: Taxonomy, Anatomy and Life History. Food and Agricultural Organization of the United Nation. Available at [http://www.fao.org/docrep/007/y5720e/y5720e07.htm#TopOfPage]. Accessed January 12, 2008. Gibson WC, Lom J, Ferris VR and Hamilton PB (2005). Phylogenetic analysis of freshwater fish trypanosomes from Europe using ssu rRNA gene sequences and random amplification of polymorphic DNA. Parasitology 130: 405-412. doi:10.1017/S0031182004006778 PMid:15830814 Ng FO (1986). Growth and Mortality of the Malaysian Cockle (Anadara granosa L.) Under Commercial Culture Analysis Through Length Frequency Data. Bay of Bengal Programme. Fisheries Research Institute Glugor, Malaysia. Pathansali D (1963). Notes on the biology of the cockle, Anadara granosa L. Proc. Indo-Pacific Fish. Counc. 11: 84-98. Pathansali D and Soong MK (1958). Some aspects of cockle (Anadara granosa L.) culture in Malaysia. Proc. Indo-Pacific Fish Counc. 8: 26-31. Pawiro S (2006). Regional Review on Marine Aquaculture Products Demand, Trades and Markets. INFOFISH, Guangzhou, 1-26. Provan J, Wattier RA and Maggs CA (2005). Phylogeographic analysis of the red seaweed Palmaria palmata reveals a Pleistocene marine glacial refugium in the English Channel. Mol. Ecol. 14: 793-803. doi:10.1111/j.1365-294X.2005.02447.x PMid:15723670 Remigio EA and Hebert PD (2003). Testing the utility of partial COI sequences for phylogenetic estimates of gastropod relationships. Mol. Phylogenet. Evol. 29: 641-647. doi:10.1016/S1055-7903(03)00140-4 Sugiyama S, Staples D and Smith SF (2004). Status and Potential of Fisheries and Aquaculture in Asia and the Pacific. Asia Pacific Fishery Commission, Bangkok. Tamura K, Dudley J, Nei M and Kumar S (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24: 1596-1599. doi:10.1093/molbev/msm092 PMid:17488738 Wang H, Zhang G, Liu X and Guo X (2008). Classification of common oysters from North China. J. Shellfish Res. 27: 495-503. doi:10.2983/0730-8000(2008)27[495:COCOFN]2.0.CO;2 Yoon SH and Kim W (2005). Phylogenetic relationships among six vetigastropod subgroups (Mollusca, Gastropoda) based on 18S rDNA sequences. Mol. Cells 19: 283-288. PMid:15879715
S. Y. Chee, Azizah, M. N. S., and Devakie, M. N., Utilization of molecular markers for the conservation of blood cockles, Anadara granosa (Arcidae), vol. 10, pp. 1245-1261, 2011.
Alexandre WSH, Azeredo-Espin AML, Krieger MH and Krieger JE (2002). Mitochondrial DNA diversity in wild and cultured populations of Brycon opalinus (Cuvier, 1819) (Characiformes, Characidae, Bryconinae) from the Paraíba do Sul Basin, Brazil. Aquaculture 214: 81-91. Aranishi F and Okimoto T (2005). Sequence polymorphism in a novel noncoding region of Pacific oyster mitochondrial DNA. J. Appl. Genet. 46: 201-206. PMid:15876688 Basiron MN (1995). Managing Marine Pollution in the Straits of Malacca. Coastal Resources Management Project, Sri Lanka. Belfiore NM and Anderson SL (2001). Effects of contaminants on genetic patterns in aquatic organisms: a review. Mutat. Res. 489: 97-122. doi:10.1016/S1383-5742(01)00065-5 Campbell A (2002). Implications of genetic discrimination: Who should know what? Available at [mgm.stanford.edu/biochem118/Projects/2002OSP/Campbell.pdf]. Accessed February 20, 2009. Chung PP, Hyne RV, Mann RM and Ballard JW (2008). Genetic and life-history trait variation of the amphipod Melita plumulosa from polluted and unpolluted waterways in eastern Australia. Sci. Total Environ. 403: 222-229. doi:10.1016/j.scitotenv.2008.05.038 PMid:18586304 Colgan DJ, Ponder WF, Beacham E and Macaranas JM (2003). Molecular phylogenetic studies of Gastropoda based on six gene segments representing coding or non-coding and mitochondrial or nuclear DNA. Moll. Res. 23: 123-148. doi:10.1071/MR03002 De Wolf H, Blust R and Backeljau T (2004). The population genetic structure of Littorina littorea (Mollusca: Gastropoda) along a pollution gradient in the Scheldt estuary (The Netherlands) using RAPD analysis. Sci. Total Environ. 325: 59-69. doi:10.1016/j.scitotenv.2003.11.004 PMid:15144778 Excoffier L, Laval LG and Schneider S (2005). Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evol. Bioinf. Online 1: 47-50. PMid:19325852 FAO (Food and Agricultural Organization) (2006). Basic bivalve biology: taxonomy, anatomy and life history. [Online] Food and Agricultural Organization of the United Nation. Available at [http://www.fao.org/docrep/007/y5720e/y5720e07.htm#TopOfPage]. Accessed January 12, 2008. FAO (Food and Agricultural Organization) (2007). The world’s aquatic genetic resources: Status and needs. [Online] Food and Agricultural Organization of the United Nation. Available at [ftp://ftp.fao.org/ag/cgrfa/cgrfa11/r11w152e.pdf]. Accessed January 12, 2008. Fernández-Tajes J, Gaspar M, Martínez-Patiño D, McDonough N, et al. (2007). Genetic variation of the razor clam Ensis siliqua (Jeffreys, 1875) along the European coast based on random amplified polymorphic DNA markers. Aquacult. Res. 38: 1205-1212. doi:10.1111/j.1365-2109.2007.01792.x Fu YX and Li WH (1993). Statistical tests of neutrality of mutations. Genetics 133: 693-709. PMid:8454210    PMCid:1205353 Gaffney PM (2006). The role of genetics in shellfish restoration. Aquat. Living Resour. 19: 277-282. doi:10.1051/alr:2006028 Graham JE, Macleod CK, Mawbey RB and Shields D (2005). Broad-scale effects of marine salmonid aquaculture on macrobenthos and the sediment environment in southeastern Tasmania. J. Exp. Mar. Biol. Ecol. 327: 70-90. doi:10.1016/j.jembe.2005.06.003 Hii YS, Law AT, Shazili NAM, Rashid MKA, et al. (2006). The Strait of Malacca: hydrological parameters, biological oxygen demand and total suspended solids. J. Sustainability Sci. Manag. 1: 1-14. Kimura M (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-120. doi:10.1007/BF01731581 PMid:7463489 Liu B, You F, Dong B and Xiang J (2006). The comparison between allozyme and RAPD markers for the population genetic structure analysis of scallop Chlamys farreri. Chinese J. Oceanol. Limnol. 24: 295-299. doi:10.1007/BF02842631 Luttikhuizen PC, Drent J and Baker AJ (2003). Disjunct distribution of highly diverged mitochondrial lineage clade and population subdivision in a marine bivalve with pelagic larval dispersal. Mol. Ecol. 12: 2215-2229. doi:10.1046/j.1365-294X.2003.01872.x PMid:12859640 Mahidol C, Na-Nakorn U, Sukmanomon S, Taniguchi N, et al. (2007). Mitochondrial DNA diversity of the Asian moon scallop, Amusium pleuronectes (Pectinidae), in Thailand. Mar. Biotechnol. 9: 352-359. doi:10.1007/s10126-006-6137-y PMid:17549563 Mantel N (1967). The detection of disease clustering and a generalized regression approach. Cancer Res. 27: 209-220. PMid:6018555 Miller MP (1997). Tools for population genetic analysis (TFPGA). Version 1.3: A Windows program for the analysis of allozyme and molecular population genetic data. Computer software distributed by author. Nei M (1973). Analysis of Gene Diversity in Subdivided Populations. Proc. Natl. Acad. Sci. U.S.A. 70: 3321-3323. doi:10.1073/pnas.70.12.3321 Nei M (1978). Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89: 583-590. PMid:17248844    PMCid:1213855 Patwary MU, Kenchington EL, Bird CJ and Zouros E (1994). The use of random amplified polymorphic DNA markers in genetic studies of the scallop Placopecten magellanicus (Gmelin, 1791). J. Shellfish Res. 13: 547-553. Pawiro S (2004). Regional Review on Marine Aquaculture Products Demand, Trades and Market. INFOFISH, China, 25. Pineda J, Hare JA and Sponaugle S (2007). Larval transport and dispersal in the coastal ocean and consequences for population connectivity. Oceanography 20: 22-39. Posada D (2004). Collapse 1.2. Online. Available at [http://Darwin.Uvigo.es]. Accessed January 17, 2006. Riddle BR and Hafner DJ (2007). Phylogeography in Historical Biogeography: Investigating the Biogeographic Histories of Populations, Species, and Young Biotas. In: Biogeography in a Changing World (Ebach MC and Tangney R, eds.). CRC Press, Boca Raton, 161-176. Shazili NAM, Yunus K, Ahmad AS, Abdullah N, et al. (2006). Heavy metal pollution status in the Malaysian aquatic environment. Aquat. Ecosyst. Health Manag. 9: 137-145. doi:10.1080/14634980600724023 Soroka M (2008). Doubly uniparental inheritance of mitochondrial DNA in the freshwater bivalve Anodonta woodiana (Bivalvia: Unionidae). Folia Biol. 56: 91-95. doi:10.3409/fb56_1-2.91-95 PMid:19055031 Star B, Apte S and Gardner JPA (2003). Genetic structuring among populations of the greenshell mussel Perna canaliculus revealed by analysis of randomly amplified polymorphic DNA. Mar. Ecol. Progr. Series 249: 171-182. doi:10.3354/meps249171 Tajima F (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595. PMid:2513255    PMCid:1203831 Tang S, Popongviwat A, Klinbunga S, Tassanakajon A, et al. (2005). Genetic heterogeneity of the tropical abalone (Haliotis asinina) revealed by RAPD and microsatellite analyses. J. Biochem. Mol. Biol. 38: 182-190. doi:10.5483/BMBRep.2005.38.2.182 PMid:15826495 Tremblay RL and Ackerman JD (2001). Gene flow and effective population size in Lepanthes (Orchidaceae): a case for genetic drift. Bio. J. Linn. Soc. 72: 47-62. doi:10.1111/j.1095-8312.2001.tb01300.x Trenkel VM, Godo OR, Handegard NO and Patel R (2004). Studying the relationship between spatial fish distributions and trawl catches. ICES1, 1.13. Walker JM, Bogan AE, Bonfiglio EA, Campbell DC, et al. (2007). Primers for amplifying the hypervariable, male-transmitted COII-COI junction region in amblemine freshwater mussels (Bivalvia: Unionidae: Ambleminae). Mol. Ecol. Notes 7: 489-491. doi:10.1111/j.1471-8286.2006.01630.x Yeh FC, Yang R and Boyle T (1999). Popgene version 1.31. Microsoft Windows-based freeware for population genetic analysis. Alberta: University of Alberta and Centre for International Forestry Research, Edmonton.