Publications

Arora DK, Hirsch PR and Kerry BR (1996). PCR-based molecular discrimination of Verticillium chlamydosporium isolates. Mycol. Res. 100: 801-809. http://dx.doi.org/10.1016/S0953-7562(96)80025-6   Bejarano-Alcázar J, Blanco-López MA, Melero-Vara JM and Jiménez-Díaz RM (1996). Etiology, importance, and distribution of Verticillium wilt of cotton in southern Spain. Plant Dis. 80: 1233-1238. http://dx.doi.org/10.1094/PD-80-1233   Bell AA (1994). Mechanisms of Disease Resistance in Gossypium Species and Variation in Verticillium dahliae. In: Challenging the Future: Proceedings of World Cotton Research Conference 1 (Constable GA and Forrester NW, eds.). CSIRO, Melbourne, 225-235.   Bhat RG and Subbarao KV (1999). Host Range Specificity in Verticillium dahliae. Phytopathology 89: 1218-1225. http://dx.doi.org/10.1094/PHYTO.1999.89.12.1218 PMid:18944648   Carder JH and Barbara DJ (1991). Molecular variation and restriction fragment length polymorphisms (RFLPs) within and between six species of Verticillium. Mycol. Res. 95: 935-942. http://dx.doi.org/10.1016/S0953-7562(09)80090-7   Carder JH and Barbara DJ (1994). Molecular variation within some Japanese isolates of Verticillium dahliae. Plant Pathol. 43: 947-950. http://dx.doi.org/10.1111/j.1365-3059.1994.tb01642.x   Dobinson KF, Patterson NA, White GJ and Grant S (1998). DNA fingerprinting and vegetative compatibility analysis indicate multiple origins for Verticillium dahliae race 2 tomato isolates from Ontario, Canada. Mycol. Res. 102: 1089-1095. http://dx.doi.org/10.1017/S0953756297006035   Elena K and Paplomatas EJ (1998). Vegetative compatibility groups within Verticillium dahliae isolates from different hosts in Greece. Plant Pathol. 47: 635-640. http://dx.doi.org/10.1046/j.1365-3059.1998.00273.x   Fradin EF and Thomma BP (2006). Physiology and molecular aspects of Verticillium wilt diseases caused by V. dahliae and V. albo-atrum. Mol. Plant Pathol. 7: 71-86. http://dx.doi.org/10.1111/j.1364-3703.2006.00323.x PMid:20507429   Gennari SD, Ercole N and Mirotti A (2000). Vegetative Compatibility Groupings Among Verticillium dahliae Kleb. Isolates from Vegetable Crops. In: Advances in Verticillium: Research and Disease Management (Tjamos EC, Rowe RC, Heale JB and Fravel DR, eds.). APS Press, St. Paul, 112-116.   Grünig CR, Sieber TN and Holdenrieder O (2001). Characterisation of dark septate endophytic fungi (DSE) using inter-simple-sequence-repeat-anchored polymerase chain reaction (ISSR-PCR) amplification. Mycol. Res. 105: 24-32. http://dx.doi.org/10.1017/S0953756200003658   Hagiwara H (1990). Differentiation of the pathogenicity of Verticillium dahliae in Japan. Plant Prot. 44: 299-303.   Hall RA (1984). Epizootic potential for aphids of different isolates of the fungus Verticillium lecanii. Entomophaga 29: 311-321. http://dx.doi.org/10.1007/BF02372119   Hiemstra JA and Rataj-Guranowska M (2000). Vegetative Compatibility Groups in Verticillium dahliae in the Netherlands. In: Advances in Verticillium: Research and Disease Management. (Tjamos EC, Rowe RC, Heale JB and Fravel DR, eds.). APS Press, St. Paul, 100-102.   Joaquim TR and Rowe RC (1990). Reassessment of vegetative compatibility relationships among strains of Verticillium dahliae using nitrate-nonutilizing mutants. Phytopathology 80: 1160-1166. http://dx.doi.org/10.1094/Phyto-80-1160   Joaquim TR and Rowe RC (1991). Vegetative compatibility and virulence of strains of Verticillium dahliae from soil and potato plants. Phytopathology 81: 552-558. http://dx.doi.org/10.1094/Phyto-81-552   Kadow KJ (1934). Seed transmission of Verticillium wilt of eggplants and tomatoes. Phytopathology 24: 1265-1268.   Klosterman SJ, Atallah ZK, Vallad GE and Subbarao KV (2009). Diversity, pathogenicity, and management of Verticillium species. Annu. Rev. Phytopathol. 47: 39-62. http://dx.doi.org/10.1146/annurev-phyto-080508-081748 PMid:19385730   Koike M, Fujita M, Nagao H and Ohshima S (1996). Random amplified polymorphic DNA analysis of Japanese isolates of Verticillium dahliae and V. albo-atrum. Plant Dis. 80: 1224-1227. http://dx.doi.org/10.1094/PD-80-1224   Komatsu T, Sumino A and Kageyama K (2001). Characterization of Verticillium dahliae isolates from potato on Hokkaido by random amplified polymorphic DNA (RAPD) and REP-PCR analyses. J. Gen. Plant Pathol. 67: 23-27. http://dx.doi.org/10.1007/PL00012982   Lee SB and Taylor JW (1990). Isolation of DNA from Fungal Mycelia and Single Spores. In: PCR Protocols: A Guide to Methods and Applications (Innis MA, Gelfand DH, Sninsky JJ and White TJ, eds.). Academic Press, San Diego, 282-287.   Masuda T and Kikuchi O (1992). Pathogenicity of Verticillium lecanii isolates to whitefly and aphids. Jap. J. Appl. Entomol. Zool. 36: 239-245. http://dx.doi.org/10.1303/jjaez.36.239   Nei M (1979). Proportion of informative families for genetic counseling with linked marker genes. Jinrui. Idengaku. Zasshi 24: 131-142. http://dx.doi.org/10.1007/BF01888684 PMid:299082   Okoli CAN, Carder JH and Barbara DJ (1993). Molecular variation and sub-specific groupings within Verticillium dahliae. Mycol. Res. 97: 233-239. http://dx.doi.org/10.1016/S0953-7562(09)80246-3   Okoli CAN, Carder JH and Barbara DJ (1994). Restriction fragment length polymorphisms (RFLPs) and the relationships of some host-adapted isolates of Verticillium dahliae. Plant Pathol. 43: 33-40. http://dx.doi.org/10.1111/j.1365-3059.1994.tb00550.x   Pérez-Artés E, García-Pedrajas MD, Bejarano-Alcázar J and Jiménez-Díaz RM (2000). Differentiation of cotton-defoliating and nondefoliating pathotypes of Verticillium dahliae by RAPD and specific PCR analyses. Eur. J. Plant Pathol. 106: 507-517. http://dx.doi.org/10.1023/A:1008756307969   Presley JT (1969). Growth response of Verticillium albo-atrum to sanguinarine in nutrient agar. Phytopathology 59: 1968-1969.   Puhalla JE and Hummel M (1983). Vegetative compatibility groups within Verticillium dahliae. Phytopathology 73: 1305-1308. http://dx.doi.org/10.1094/Phyto-73-1305   Ramsay JR, Multani DS and Lyon BR (1996). RAPD-PCR identification of Verticillium dahliae isolates with differential pathogenicity on cotton. Aust. J. Agri. Res. 47: 681-693. http://dx.doi.org/10.1071/AR9960681   Rodrigues KF, Sieber TN, Grunig CR and Holdenrieder O (2004). Characterization of Guignardia mangiferae isolated from tropical plants based on morphology, ISSR-PCR amplifications and ITS1-5.8S-ITS2 sequences. Mycol. Res.108: 45-52. http://dx.doi.org/10.1017/S0953756203008840 PMid:15035504   Schnathorst WC and Mathre DE (1966). Host range and differentiation of a severe form of Verticillium albo-atrum in cotton. Phytopathology 56: 1155-1161.   Usami T, Abiko M, Shishido M and Amemiya Y (2002). Specific detection of tomato pathotype of Verticillium dahliae by PCR assays. J. Gen. Plant Pathol. 68: 134-140. http://dx.doi.org/10.1007/PL00013066   Wang S, Miao X, Zhao W, Huang B, et al. (2005). Genetic diversity and population structure among strains of the entomopathogenic fungus, Beauveria bassiana, as revealed by inter-simple sequence repeats (ISSR). Mycol. Res. 109: 1364-1372. http://dx.doi.org/10.1017/S0953756205003709 PMid:16353636   Wilhelm S (1955). Longevity of the Verticillium wilt fungus in the laboratory and field. Phytopathology 45: 180-181.   Xiao YH and Lin BQ (1995). Identification of Verticillium wilt resistance on eggplant germplasm. Chin. Veg. 1: 32-33.   Yi J (1998). Advances of breeding on eggplant for Verticillium wilt resistance. Chin. Veg. 6: 52-55.   Yi J, Chen J and Gao J (2000). Evaluation of Verticillium wilt resistance on eggplant germplasm (Chinese). Jiangsu Agri. Sci. 6: 54-57.   Zietkiewicz E, Rafalski A and Labuda D (1994). Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20: 176-183. http://dx.doi.org/10.1006/geno.1994.1151 PMid:8020964

Al-Ahmad MA (1993). The solar chamber: an innovative technique for controlling verticillium wilt of olive. EPPO Bull. 23: 531-535. http://dx.doi.org/10.1111/j.1365-2338.1993.tb01365.x   Aoki T and O'Donnell K (1999). Morphological characterization of Gibberella coronicola sp. nov., obtained through mating experiments of Fusarium pseudograminearum. Mycoscience 40: 443-453. http://dx.doi.org/10.1007/BF02461021   Bentley AR, Griffiths SP, Burgess LW and Summerell BA (2004). Austrostipa aristiglumis (Plains grass) as an Intermediate Host of Fusarium pseudograminearum and other Fusarium species. Proceedings of the 3rd Australasian Soilborne Diseases Symposium (KMOH Keller BH, ed.). South Australian Research and Development Institute, Adelaide.   Benyon F, Burgess L and Sharp P (1995). Molecular Variation Amongst Fusarium species Responsible for Crown Rots of Winter Cereals in Relation to their Pathogenicity and Morphological Characteristics. In: International Seminar on Fusarium: Mycotoxins, Taxonomy and Pathogenicity, Martina Franca.   Burgess LW, Backhouse D, Summerell BA and Swan LJ (2001). Crown Rot of Wheat. In: Fusarium: Paul E. Nelson Memorial Symposium (Summerell BA, Leslie JF, Backhouse D, Bryden WL, et al., eds.). American Phytopathological Society Press, Saint Paul, 271-294.   Chappell M, Griffey C, Pridgen T, Chen J, et al. (1999). Assessment and Reaction of Soft Red Winter Wheat Genotypes to Fusarium graminearum and Effects on Traits Related to Yield and Seed Quality. Proceedings of the National Fusarium Head Blight Forum, Sioux Falls, 143-145.   Demeke T, Clear RM, Patrick SK and Gaba D (2005). Species-specific PCR-based assays for the detection of Fusarium species and a comparison with the whole seed agar plate method and trichothecene analysis. Int. J. Food Microbiol. 103: 271-284. http://dx.doi.org/10.1016/j.ijfoodmicro.2004.12.026 PMid:16099312   Diaz MR and Fell JW (2004). High-throughput detection of pathogenic yeasts of the genus Trichosporon. J. Clin. Microbiol. 42: 3696-3706. http://dx.doi.org/10.1128/JCM.42.8.3696-3706.2004 PMid:15297519 PMCid:497590   Ferrer C, Colom F, Frases S, Mulet E, et al. (2001). Detection and identification of fungal pathogens by PCR and by ITS2 and 5.8S ribosomal DNA typing in ocular infections. J. Clin. Microbiol. 39: 2873-2879. http://dx.doi.org/10.1128/JCM.39.8.2873-2879.2001 PMid:11474006 PMCid:88253   Francis RG and Burgess L (1977). Characteristics of two populations of Fusarium roseum 'Graminearum' in Eastern Australia. Trans. Br. Mycol. Soc. 68: 421-427. http://dx.doi.org/10.1016/S0007-1536(77)80196-4   Hall R (1996). Principles and Practice of Managing Soilborne Plant Pathogens American Phytopathological Society. APS Press, Saint Paul.   Luck J, Spackman M, Freeman A, Trebicki P, et al. (2011). Climate change and diseases of food crops. Plant Pathol. 60: 113-121. http://dx.doi.org/10.1111/j.1365-3059.2010.02414.x   McKnight T and Hart J (1966). Some field observations on crown rot disease of wheat caused by Fusarium graminearum. Queensl. J. Agr. Anim. Sci. 23: 373-378.   Mishra PK, Tewari JP, Clear RM and Turkington TK (2006). Genetic diversity and recombination within populations of Fusarium pseudograminearum from western Canada. Int. Microbiol. 9: 65-68. PMid:16636992   Mitter V, Zhang M, Liu C, Ghosh R, et al. (2006). A high throughput glasshouse bioassay to detect crown rot resistance in wheat germplasm. Plant Pathol. 55: 433-441. http://dx.doi.org/10.1111/j.1365-3059.2006.01384.x   Moller EM, Bahnweg G, Sandermann H and Geiger HH (1992). A simple and efficient protocol for isolation of high molecular weight DNA from filamentous fungi, fruit bodies, and infected plant tissues. Nucleic Acids Res. 20: 6115- 6116. http://dx.doi.org/10.1093/nar/20.22.6115 PMid:1461751 PMCid:334490   Oechsler RA, Feilmeier MR, Ledee DR, Miller D, et al. (2009). Utility of molecular sequence analysis of the ITS rRNA region for identification of Fusarium spp. from ocular sources. Invest. Ophthalmol. Vis. Sci. 50: 2230-2236. http://dx.doi.org/10.1167/iovs.08-2757 PMid:19136697   Purss G (1966). Studies of varietal resistance to crown rot of wheat caused by Fusarium graminearum Schw. Queensl. J. Agr. Anim. Sci. 23: 475-598.   Saremi H, Ammarellou A and Jafary H (2007). Incidence of crown rot disease of wheat caused by Fusarium pseudograminearum as a new soil born fungal species in north west Iran. Pak. J. Biol. Sci. 10: 3606-3612. http://dx.doi.org/10.3923/pjbs.2007.3606.3612 PMid:19093469   Smiley RW, Gourlie JA, Easley SA and Patterson LM (2005). Crop damage estimates for crown rot of wheat and barley in the Pacific Northwest. Plant Dis. 89: 595-604. http://dx.doi.org/10.1094/PD-89-0595   Trigo RM, Gouveia CM and Barriopedro D (2010). The intense 2007-2009 drought in the Fertile Crescent: Impacts and associated atmospheric circulation. Agr. Forest Meteorol. 150: 1245-1257. http://dx.doi.org/10.1016/j.agrformet.2010.05.006   VanWyk PS, Los O, Pauer GDC and Marasas WFO (1987). Geographic distribution and pathogenicity of Fusarium species associated with crown rot of wheat in the Orange Free State, South Africa. Phytophylactica 19: 271-274.   Wearing A and Burgess L (1977). Distribution of Fusarium roseum 'Graminearum' Group 1 and its mode of survival in eastern Australian wheat belt soils. Trans. Br. Mycol. Soc. 69: 429-442. http://dx.doi.org/10.1016/S0007-1536(77)80082-X   Wildermuth GB, Thomas GA, Radford BJ, McNamara RB, et al. (1997). Crown rot and common root rot in wheat grown under different tillage and stubble treatments in southern Queensland, Australia. Soil Till. Res. 44: 211-224. http://dx.doi.org/10.1016/S0167-1987(97)00054-8

Cao Y and Klionsky DJ (2007). Physiological functions of Atg6/Beclin 1: a unique autophagy-related protein. Cell Res. 17: 839-849. http://dx.doi.org/10.1038/cr.2007.78 PMid:17893711   Chen X, Gu Z, Xin D, Hao L, et al. (2011). Identification and characterization of putative CIPK genes in maize. J. Genet. Genom. 38: 77-87. http://dx.doi.org/10.1016/j.jcg.2011.01.005 PMid:21356527   Fujiki Y, Yoshimoto K and Ohsumi Y (2007). An Arabidopsis homolog of yeast ATG6/VPS30 is essential for pollen germination. Plant Physiol. 143: 1132-1139. http://dx.doi.org/10.1104/pp.106.093864 PMid:17259285 PMCid:1820928   Gu X and Vander Velden K (2002). DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein 3687 Regulation of ATG6 homologs by abiotic stresses and hormones family. Bioinformatics 18: 500-501. http://dx.doi.org/10.1093/bioinformatics/18.3.500 PMid:11934757   Harrison-Lowe NJ and Olsen LJ (2008). Autophagy protein 6 (ATG6) is required for pollen germination in Arabidopsis thaliana. Autophagy 4.   Hashiguchi Y, Furuta Y, Kawahara R and Nishida M (2007). Diversification and adaptive evolution of putative sweet taste receptors in threespine stickleback. Gene 396: 170-179. http://dx.doi.org/10.1016/j.gene.2007.03.015 PMid:17467198   Horton P, Park KJ, Obayashi T and Nakai K (2006). Protein Subcellular Localization Prediction with WoLF PSORT. Citeseer.   Huang J, Wang MM, Bao YM, Sun SJ, et al. (2008). SRWD: a novel WD40 protein subfamily regulated by salt stress in rice (Oryza sativa L.). Gene 424: 71-79. http://dx.doi.org/10.1016/j.gene.2008.07.027 PMid:18755256   Hung KT and Kao CH (2004). Hydrogen peroxide is necessary for abscisic acid-induced senescence of rice leaves. J. Plant Physiol. 161: 1347-1357. http://dx.doi.org/10.1016/j.jplph.2004.05.011 PMid:15658805   Jung KH, Dardick C, Bartley LE, Cao P, et al. (2008). Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy. PLoS One 3: e3337. http://dx.doi.org/10.1371/journal.pone.0003337 PMid:18836531 PMCid:2556097   Kametaka S, Okano T, Ohsumi M and Ohsumi Y (1998). Apg14p and Apg6/Vps30p form a protein complex essential for autophagy in the yeast, Saccharomyces cerevisiae. J. Biol. Chem. 273: 22284-22291. http://dx.doi.org/10.1074/jbc.273.35.22284 PMid:9712845   Liu Y, Schiff M, Czymmek K, Talloczy Z, et al. (2005). Autophagy regulates programmed cell death during the plant innate immune response. Cell 121: 567-577. http://dx.doi.org/10.1016/j.cell.2005.03.007 PMid:15907470   Meng XB, Zhao WS, Lin RM, Wang M, et al. (2006). Molecular cloning and characterization of a rice blast-inducible RING-H2 type zinc finger gene. DNA Seq. 17: 41-48. http://dx.doi.org/10.1080/10425170500476509 PMid:16753816   Michiorri S, Gelmetti V, Giarda E, Lombardi F, et al. (2010). The Parkinson-associated protein PINK1 interacts with Beclin1 and promotes autophagy. Cell Death. Differ. 17: 962-974. http://dx.doi.org/10.1038/cdd.2009.200 PMid:20057503   Mochida K, Kawaura K, Shimosaka E, Kawakami N, et al. (2006). Tissue expression map of a large number of expressed sequence tags and its application to in silico screening of stress response genes in common wheat. Mol. Genet. Genom. 276: 304-312. http://dx.doi.org/10.1007/s00438-006-0120-1 PMid:16832693   Moriyasu Y and Ohsumi Y (1996). Autophagy in tobacco suspension-cultured cells in response to sucrose starvation. Plant Physiol. 111: 1233-1241. PMid:12226358 PMCid:161001   Nielsen R and Yang Z (1998). Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics 148: 929-936. PMid:9539414 PMCid:1460041   Qin G, Ma Z, Zhang L, Xing S, et al. (2007). Arabidopsis AtBECLIN 1/AtAtg6/AtVps30 is essential for pollen germination and plant development. Cell Res. 17: 249-263. PMid:17339883   Ramalingam J, Pathan MS, Feril O, Ross K, et al. (2006). Structural and functional analyses of the wheat genomes based on expressed sequence tags (ESTs) related to abiotic stresses. Genome 49: 1324-1340. http://dx.doi.org/10.1139/g06-094 PMid:17218960   Rana RM, Dong S, Ali Z, Khan AI, et al. (2012). Identification and characterization of the Bcl-2-associated athanogene (BAG) protein family in rice. Afr. J. Biotechnol. 11: 88-99.   Sato Y and Yokoya S (2008). Enhanced tolerance to drought stress in transgenic rice plants overexpressing a small heat-shock protein, sHSP17.7. Plant Cell Rep. 27: 329-334. http://dx.doi.org/10.1007/s00299-007-0470-0 PMid:17968552   Sinha S and Levine B (2008). The autophagy effector Beclin 1: a novel BH3-only protein. Oncogene 27 (Suppl 1): S137-S148. http://dx.doi.org/10.1038/onc.2009.51 PMid:19641499 PMCid:2731580   Suzuki K, Kirisako T, Kamada Y, Mizushima N, et al. (2001). The pre-autophagosomal structure organized by concerted functions of APG genes is essential for autophagosome formation. EMBO J. 20: 5971-5981. http://dx.doi.org/10.1093/emboj/20.21.5971 PMid:11689437 PMCid:125692   Tamura K, Peterson D, Peterson N, Stecher G, et al. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28: 2731-2739. http://dx.doi.org/10.1093/molbev/msr121 PMid:21546353 PMCid:3203626   Thompson JD, Higgins DG and Gibson TJ (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680. http://dx.doi.org/10.1093/nar/22.22.4673 PMid:7984417 PMCid:308517   Waterhouse AM, Procter JB, Martin DM, Clamp M, et al. (2009). Jalview Version 2-a multiple sequence alignment editor and analysis workbench. 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