Publications

Avise JC, Bowen BW, Lamb T, Meylan AB, et al. (1992). Mitochondrial DNA evolution at a turtle’s pace: evidence for low genetic variability and reduced microevolutionary rate in the Testudines. Mol. Biol. Evol. 9: 457-473. PMid:1584014 Clement M, Posada D and Crandall KA (2000). TCS: a computer program to estimate gene genealogies. Mol. Ecol. 9: 1657-1659. doi:10.1046/j.1365-294x.2000.01020.x PMid:11050560 Cockerham CC and Weir BS (1993). Estimation of gene flow from F-statistics. Evolution 47: 855-863. doi:10.2307/2410189 Excoffier L, Smouse PE and Quattro JM (1992). Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491. PMid:1644282    PMCid:1205020 Excoffier L, Laval G and Schneider S (2005). Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1: 47-50. PMid:19325852 Fachín-Terán A, Vogt RC and Thorbjarnarson JB (2000). Padrões de Caça e Uso de Quelônios na Reserva de Desenvolvimento Sustentável Mamirauá, Amazonas, Brasil. In: Manejo de Fauna Silvestre en Amazonia y Latinoamérica (Cabrera E, Mercolli C and Resquin R, eds.). Guarani Raity, Asunción, 323-338. Fachín-Terán A, Vogt RC and Thorbjarnarson JB (2003). Estrutura populacional, razão sexual e abundancia de Podocnemis sextuberculata (Testudines, Podocnemididae) na reserva de desenvolvimento sustentável Mamirauá, Amazonas, Brasil. Phyllomedusa 2: 43-63. Fachín-Terán A, Vogt RC and Thorbjarnarson JB (2006). Seasonal movements of Podocnemis sextuberculata (Testudines: Podocnemididae) in the Mamirauá sustainable development reserve, Amazonas, Brazil. Chelon. Conservat. Biol. 5: 18-24. doi:10.2744/1071-8443(2006)5[18:SMOPST]2.0.CO;2 Fantin C, Viana LS, Monjeló LAS and Farias IP (2008). Polyandry in Podocnemis unifilis (Pleurodira; Podocnemididae), the vulnerable yellow-spotted Amazon River turtle. Amphibia-Reptilia 29: 479-486. doi:10.1163/156853808786230361 Finch CE (1990). Longevity, Senescence, and the Genome. University of Chicago Press, Chicago. Frankham R, Ballou JR and Briscoe DA (2002). Introduction to Conservation Genetics. Cambridge University Press, Cambridge. Fu YX (1997). Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147: 915-925. PMid:9335623    PMCid:1208208 Gibbons JW (1986). Movement patterns among turtle populations: Applicability to management of the desert tortoise. Herpetologica 42: 104-113. Hall T (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids Symp. Ser. 41: 95-98. Hrbek T, Kucuk F, Frickey T, Stolting KN, et al. (2002). Molecular phylogeny and historical biogeography of the Aphanius (Pisces, Cyprinodontiformes) species complex of central Anatolia, Turkey. Mol. Phylogenet. Evol. 25: 125-137. doi:10.1016/S1055-7903(02)00203-8 IBAMA (1989). Projeto Quelônios da Amazônia - 10 Anos. Brasília. IUCN (2009). The IUCN Red List of Threatened Species. Available at [http://www.redlist.org.]. Accessed May 12, 2009. Janzen FJ, Hoover SL and Shaffer HB (1997). Molecular phylogeography of the western pond turtle (Clemmys marmorata): Preliminary results. Chelonian Conserv. Biol. 2: 623-626. Kimura M and Maruyama T (1971). Pattern of neutral polymorphism in a geographically structured population. Genet. Res. 18: 125-131. doi:10.1017/S0016672300012520 Librado P and Rozas J (2009). DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452. doi:10.1093/bioinformatics/btp187 PMid:19346325 Lutz PL, Prentice HM and Milton SL (2003). Is turtle longevity linked to enhanced mechanisms for surviving brain anoxia and reoxygenation? Exp. Gerontol. 38: 797-800. doi:10.1016/S0531-5565(03)00111-6 Nei M (1987). Molecular Evolutionary Genetics. Columbia University Press, New York. Nei M and Li WH (1979). Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. U. S. A. 76: 5269-5273. doi:10.1073/pnas.76.10.5269 Pearse DE, Arndt AD, Valenzuela N, Miller BA, et al. (2006a). Estimating population structure under nonequilibrium conditions in a conservation context: continent-wide population genetics of the giant Amazon river turtle, Podocnemis expansa (Chelonia; Podocnemididae). Mol. Ecol. 15: 985-1006. doi:10.1111/j.1365-294X.2006.02869.x PMid:16599962 Pearse DE, Dastrup RB, Hernandez O and Sites Jr JW (2006b). Paternity in an Orinoco population of endangered Arrau River turtles, Podocnemis expansa (Pleurodira; Podocnemididae), from Venezuela. Chelon Conserv. Biol. 5: 232- 238. doi:10.2744/1071-8443(2006)5[232:PIAOPO]2.0.CO;2 Sambrook J, Fritsch EF and Maniatis T (1989). Molecular Cloning. A Laboratory Manual. 2nd edn. Cold Spring Harbor Laboratory Press, New York. SEBRAE (1995). Criação de Quelônios em Cativeiro. Programa de Informação. SEBRAE, Manaus. Seddon JM, Baverstock PR and Georges A (1998). The rate of mitochondrial 12S rRNA gene evolution is similar in freshwater turtles and marsupials. J. Mol. Evol. 46: 460-464. doi:10.1007/PL00006326 PMid:9541541 Sites Jr JW, Fitzsimmons NN, Silva NJ and Cantarelli VH (1999). Conservation genetics of the giant Amazon River turtle (Podocnemis expansa; Pelomedusidae) - inferences from two classes of molecular markers. Chelon. Conservat. Biol. 3: 454-463. Spinks PQ and Shaffer HB (2005). Range-wide molecular analysis of the Western Pond Turtle (Emys marmorata): cryptic variation, isolation by distance, and their conservation implications. Mol. Ecol. 14: 2047-2064. doi:10.1111/j.1365-294X.2005.02564.x PMid:15910326 Tajima F (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595. PMid:2513255    PMCid:1203831 Templeton AR, Crandall KA and Sing CF (1992). A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics 132: 619-633. PMid:1385266    PMCid:1205162 Vargas-Ramírez M, Chiari Y, Castaño-Mora OV and Menken SBJ (2007). Low genetic variability in the endangered Colombian endemic freshwater turtle Podocnemis lewyana (Testudines, Podocnemididae). Contrib. Zool. 76: 1-7. Weisrock DW and Janzen FJ (2000). Comparative molecular phylogeography of North American softshell turtles (Apalone): Implications for regional and wide-scale historical evolutionary forces. Mol. Phylogenet. Evol. 14: 152- 164. doi:10.1006/mpev.1999.0689 PMid:10631049 Wright S (1931). Evolution in Mendelian populations. Genetics 16: 97-159. PMid:17246615    PMCid:1201091 Zhang DX and Hewitt GM (1996). Nuclear integrations: challenges for mitochondrial DNA markers. Trends Ecol. Evol. 11: 247-251. doi:10.1016/0169-5347(96)10031-8

Alencar TR, Cerqueira DM, da Cruz MR, Wyant PS, et al. (2007). New HPV-16 European and non-European variants in Central Brazil. Virus Genes 35: 1-4. http://dx.doi.org/10.1007/s11262-006-0040-5 PMid:17048111   Archard HO, Heck JW and Stanley HR (1965). Focal epithelial hyperplasia: an unusual oral mucosal lesion found in Indian children. Oral Surg. Oral Med. Oral Pathol. 20: 201-212. http://dx.doi.org/10.1016/0030-4220(65)90192-1   Bauer HM and Manos MM (1993). PCR Detection of Genital Human Papillomavirus. In: Diagnostic Molecular Microbiology, Principles and Application (Persing D, Smith T and Tenover F, eds.). American Society of Microbiology, Washington, 407-413.   Brady CS, Duggan-Keen MF, Davidson JA, Varley JM, et al. (1999). Human papillomavirus type 16 E6 variants in cervical carcinoma: relationship to host genetic factors and clinical parameters. J. Gen. Virol. 80 (Pt 12): 3233-3240. PMid:10567656   Cerqueira DM, Raiol T, Veras NM, von Gal MN, et al. (2008). New variants of human papillomavirus type 18 identified in central Brazil. Virus Genes 37: 282-287. http://dx.doi.org/10.1007/s11262-008-0263-8 PMid:18663566   Chaturvedi AK, Brinkman JA, Gaffga AM, Dumestre J, et al. (2004). Distribution of human papillomavirus type 16 variants in human immunodeficiency virus type 1-positive and -negative women. J. Gen. Virol. 85: 1237-1241. http://dx.doi.org/10.1099/vir.0.19694-0 PMid:15105540   Cruz MR, Cerqueira DM, Cruz WB, Camara GN, et al. (2004). Prevalence of human papillomavirus type 16 variants in the Federal District, Central Brazil. Mem. Inst. Oswaldo Cruz 99: 281-282. http://dx.doi.org/10.1590/S0074-02762004000300007 PMid:15273800   de Villiers EM, Fauquet C, Broker TR, Bernard HU, et al. (2004). Classification of papillomaviruses. Virology 324: 17-27. http://dx.doi.org/10.1016/j.virol.2004.03.033 PMid:15183049   Fakhry C, D'souza G, Sugar E, Weber K, et al. (2006). Relationship between prevalent oral and cervical human papillomavirus infections in human immunodeficiency virus-positive and -negative women. J. Clin. Microbiol. 44: 4479-4485. http://dx.doi.org/10.1128/JCM.01321-06 PMid:17021055 PMCid:1698387   Hall T (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids Symp. Ser. 41: 95-98.   IARC (2007). Monographs on the Evaluation of Carcinogenic Risks to Humans. Vol. 64. Human Papillomaviruses. International Agency for Research on Cancer, Lyon.   Jarvis A and Gorlin RJ (1972). Focal epithelial hyperplasia in an Eskimo population. Oral Surg. Oral Med. Oral Pathol. 33: 227-228. http://dx.doi.org/10.1016/0030-4220(72)90392-1   Koshiol J, Lindsay L, Pimenta JM, Poole C, et al. (2008). Persistent human papillomavirus infection and cervical neoplasia: a systematic review and meta-analysis. Am. J. Epidemiol. 168: 123-137. http://dx.doi.org/10.1093/aje/kwn036 PMid:18483125 PMCid:2878094   Kumar S, Tamura K and Nei M (2004). MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief. Bioinform. 5: 150-163. http://dx.doi.org/10.1093/bib/5.2.150 PMid:15260895   Lefevre J, Hankins C, Pourreaux K, Voyer H, et al. (2003). Real-time PCR assays using internal controls for quantitation of HPV-16 and beta-globin DNA in cervicovaginal lavages. J. Virol. Methods 114: 135-144. http://dx.doi.org/10.1016/j.jviromet.2003.09.003 PMid:14625048   Longuet M, Beaudenon S and Orth G (1996). Two novel genital human papillomavirus (HPV) types, HPV68 and HPV70, related to the potentially oncogenic HPV39. J. Clin. Microbiol. 34: 738-744. PMid:8904450 PMCid:228882   Muñoz N (2000). Human papillomavirus and cancer: the epidemiological evidence. J. Clin. Virol. 19: 1-5. http://dx.doi.org/10.1016/S1386-6532(00)00125-6   Muñoz N, Bosch FX, de Sanjosé S, Herrero R, et al. (2003). Epidemiologic classification of human papillomavirus types associated with cervical cancer. N. Engl. J. Med. 348: 518-527. http://dx.doi.org/10.1056/NEJMoa021641 PMid:12571259   Neophytou PI, Tsitsanou KE, Philippidou D, Lerios S, et al. (2004). Identification of novel HPV subtypes and variants in Cyprus. Unpublished GenBank Accession Number AJ831568.   Nonogaki S, Wakamatsu A, Longatto FA, Pereira SM, et al. (2004). Hybrid capture II and polymerase chain reaction for identifying HPV infections in samples collected in a new collection medium: a comparison. Acta Cytol. 48: 514-520. http://dx.doi.org/10.1159/000326413 PMid:15296342   Parkin DM, Bray FI and Devesa SS (2001). Cancer burden in the year 2000. The global picture. Eur. J. Cancer 37 (Suppl 8): S4-S66. http://dx.doi.org/10.1016/S0959-8049(01)00267-2   Pfister H, Hettich I, Runne U, Gissmann L, et al. (1983). Characterization of human papillomavirus type 13 from focal epithelial hyperplasia Heck lesions. J. Virol. 47: 363-366. PMid:6312071 PMCid:255268   Qu W, Jiang G, Cruz Y, Chang CJ, et al. (1997). PCR detection of human papillomavirus: comparison between MY09/ MY11 and GP5+/GP6+ primer systems. J. Clin. Microbiol. 35: 1304-1310. PMid:9163434 PMCid:229739   Reuter S, Delius H, Kahn T, Hofmann B, et al. (1991). Characterization of a novel human papillomavirus DNA in the cervical carcinoma cell line ME180. J. Virol. 65: 5564-5568. PMid:1716694 PMCid:249064   Ronquist F and Huelsenbeck JP (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574. http://dx.doi.org/10.1093/bioinformatics/btg180 PMid:12912839   Sambrook J, Fritsch EF and Maniatis T (1989). Molecular Cloning: A Laboratory Manual. 2nd edn. Cold Springs Harbor Laboratory Press, Cold Springs Harbor, New York.   Santillán EM (2003). Hiperplasia epitelial focal (enfermidade de Heck). Reporte de un caso. Rev. Mex. Pediatr. 70: 132-134.   Santos-Borborema CM (2006). Sequenciamento e Análise do Genoma do HPV tipo 13 isolado na Amazônia. Doctoral thesis, Universidade Federal do Amazonas, Manaus.   Sichero L and Villa LL (2006). Epidemiological and functional implications of molecular variants of human papillomavirus. Braz. J. Med. Biol. Res. 39: 707-717. http://dx.doi.org/10.1590/S0100-879X2006000600002 PMid:16751975   Stewart AC, Eriksson AM, Manos MM, Munoz N, et al. (1996). Intratype variation in 12 human papillomavirus types: a worldwide perspective. J. Virol. 70: 3127-3136. PMid:8627792 PMCid:190175   Tindall KR and Kunkel TA (1988). Fidelity of DNA synthesis by the Thermus aquaticus DNA polymerase. Biochemistry 27: 6008-6013. http://dx.doi.org/10.1021/bi00416a027 PMid:2847780   Villa LL, Sichero L, Rahal P, Caballero O, et al. (2000). Molecular variants of human papillomavirus types 16 and 18 preferentially associated with cervical neoplasia. J. Gen. Virol. 81: 2959-2968. PMid:11086127   Wright JD and Herzog TJ (2002). Human papillomavirus: emerging trends in detection and management. Curr. Womens Health Rep. 2: 259-265. PMid:12150752   Xi LF, Carter JJ, Galloway DA, Kuypers J, et al. (2002). Acquisition and natural history of human papillomavirus type 16 variant infection among a cohort of female university students. Cancer Epidemiol. Biomarkers Prev. 11: 343-351. PMid:11927494   Xi LF, Kiviat NB, Hildesheim A, Galloway DA, et al. (2006). Human papillomavirus type 16 and 18 variants: race-related distribution and persistence. J. Natl. Cancer Inst. 98: 1045-1052. http://dx.doi.org/10.1093/jnci/djj297 PMid:16882941   Yamada T, Manos MM, Peto J, Greer CE, et al. (1997). Human papillomavirus type 16 sequence variation in cervical cancers: a worldwide perspective. J. Virol. 71: 2463-2472. PMid:9032384 PMCid:191357

Andrade PCM (2004). Criação e Manejo de Quelônios no Amazonas (Projeto Diagnóstico da Criação de Animais Silvestres no Estado do Amazonas). IBAMA/UFAM/SDS, Manaus.   Blouin MS (2003). DNA-based methods for pedigree reconstruction and kinship analysis in natural populations. Trends Ecol. Evol. 18: 503-511. http://dx.doi.org/10.1016/S0169-5347(03)00225-8   Dewoody JA, Schupp J, Kenefic L, Busch J, et al. (2004). Universal method for producing ROX-labeled size standards suitable for automated genotyping. Biotechniques 37: 348, 350, 352. PMid:15470886   Fantin C, Carvalho CF, Hrbek T, Sites JW Jr, et al. (2007). Microsatellite DNA markers for Podocnemis unifilis, the endangered yellow-spotted Amazon River turtle. Mol. Ecol. Notes 7: 1235-1238. http://dx.doi.org/10.1111/j.1471-8286.2007.01842.x   Fantin C, Viana LS, Monjeló LAS and Farias IP (2008). Polyandy in Podocnemis unifilis (Pleurodira; Podocnemididae), the vulnerable yellow-spotted Amazon River turtle. Amphibia-Reptilia 29: 479-486. http://dx.doi.org/10.1163/156853808786230361   Ferrara CR (2007). Comportamento Reprodutivo de Podocnemis erythrocephala (Spix 1824) (Testudines, Podocnemididae) em Cativeiro. Master's thesis, Instituto Nacional de Pesquisa da Amazônia - INPA/UFAM, Manaus.   Godnight KF and Queller DC (1999). Computer software for performing likelihood tests of pedigree relationship using genetic markers. Mol. Ecol. 8: 1231-1234. http://dx.doi.org/10.1046/j.1365-294x.1999.00664.x   Mittermeier RA and Wilson RA (1974). Redescription of Podocnemis erythrocephala (Spix, 1824), an Amazonian pelomedusid turtle. Pap. Avul. Zool. 28: 147-162.   Myers EM and Zamudio KR (2004). Multiple paternity in an aggregate breeding amphibian: the effect of reproductive skew on estimates of male reproductive success. Mol. Ecol. 13: 1951-1963. http://dx.doi.org/10.1111/j.1365-294X.2004.02208.x PMid:15189216   Paetkau D, Calvert W, Stirling I and Strobeck C (1995). Microsatellite analysis of population structure in Canadian polar bears. Mol. Ecol. 4: 347-354. http://dx.doi.org/10.1111/j.1365-294X.1995.tb00227.x PMid:7663752   Pearse DE, Dastrup RB, Hernandez O and Sites JW Jr (2006). Paternity in an Orinoco population of endangered arrau River Turtles, Podocnemis expansa (Pleurodira; Podocnemididae), from Venezuela. Chelonian Conserv. Biol. 5: 232-238. http://dx.doi.org/10.2744/1071-8443(2006)5[232:PIAOPO]2.0.CO;2   Pritchard PCH and Trebbau P (1984). The Turtles of Venezuela. Society for the Study of Amphibians and Reptiles, Ann Arbor.   Schuelke M (2000). An economic method for the fluorescent labeling of PCR fragments. Nat. Biotechnol. 18: 233-234. http://dx.doi.org/10.1038/72708 PMid:10657137   Valenzuela N (2000). Multiple paternity in side-neck turtles Podocnemis expansa: evidence from microsatellite DNA data. Mol. Ecol. 9: 99-105. http://dx.doi.org/10.1046/j.1365-294x.2000.00806.x PMid:10652079   Weir BS (1996). Genetic Data Analysis II: Methods for Discrete Population Genetic Data. Sinauer Associates, Sunderland.   Wermuth H and Mertens R (1961). Schildkröten, Krokodile, Brückenechsen. Gustav Fischer Verla, Jena.