Found 5 results
Filters: Author is E.V. Tambarussi  [Clear All Filters]
L. O. S. Anjos, Peixoto, Jr, R. F., Chanquinie, D. M. S., Pinto, L. R., Creste, S. A., Dinardo-Miranda, L. L., Landell, M. G. A., Tambarussi, E. V., and Vencovsky, R., Microsatellite loci and genetic structure of artificial populations of Cotesia flavipes (Hymenoptera, Braconidae), vol. 15, no. 4, p. -, 2016.
Conflicts of interestThe authors declare no conflict of interest.ACKNOWLEDGMENTSResearch supported by a grant (#2008/56146-5) and fellowships from the Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP).REFERENCESAbercrombie LG, Anderson CM, Baldwin BG, Bang IC, Molecular Ecology Resources Primer Development Consortiumet al (2009). Isolation and characterization of nine microsatellite loci in Cotesia sesamiae (Cameron) (Hymenoptera: Braconidae), a parasitoid of African stem borer pests. In: Molecular Ecology Resources Primer Development Consortium. Permanent Genetic Resources added to Molecular Ecology Resources database 1 January 2009-30 April 2009. Mol. Ecol. Resour. 9: 1375-1379. Aljanabi SM, Forget L, Dookun A, et al (1999). An improved and rapid protocol for the isolation of polysaccharide and polyphenol-free sugarcane DNA. Plant Mol. Biol. Report. 17: 1-8. Altschul SF, Gish W, Miller W, Myers EW, et al. (1990). Basic local alignment search tool. J. Mol. Biol. 215: 403-410. Baker DA, Loxdale HD, Edwards OR, et al (2003). Genetic variation and founder effects in the parasitoid wasp, Diaeretiella rapae (M’intosh) (Hymenoptera: Braconidae: Aphidiidae), affecting its potential as a biological control agent. Mol. Ecol. 12: 3303-3311. Botelho PSM, et al (1992). Quinze anos de controle biológico da Diatraea saccharalis utilizando parasitoides. Pesq. Agrop. Brasil 27: 255-262. Botelho PSM, Macedo N and Mendes AC (1980). Aspects of the population dynamics of Apanteles flavipes (Cameron) and support capacity of its host Diatraea saccharalis (Fabr.). In: Congress of the International Society of Sugar Cane Technologists - ISSCT, Manila, Philippines. 2: 1736-1745. Botelho PSM, De Gaspari N, Macedo N, Almeida LC, et al. (1983). Control of Diatraea saccharalis with Apanteles flavipes. Proc. Congr. Int. Soc. Sugar Cane Technol. 2: 926-933. Bueno VHP (2009). Controle biológico de pragas - produção massal e controle de qualidade. (2nd. Eds.) Eds. UFLA, Lavras, (in Portuguese). Campos-Farinha AEC, Chaud-Netto J, Gobbi N, et al (2000). Biologia reprodutiva de Cotesia flavipes (Cameron) (Hymenoptera: Braconidae), discriminação entre lagartas parasitadas e não parasitadas de Diatraea saccharalis (Fabricius) (Lepidoptera: Pyralidae), tempo de desenvolvimento e razão sexual dos parasitoides. Arq. Inst. Biol. (Sao Paulo) 67: 229-234. Creste S, Tulmann Neto A, Figueira A, et al (2001). Detection of single sequence repeat polymorphisms in denaturing polyacrylamide sequencing gels by silver staining. Plant Mol. Biol. Report. 19: 299-306. Creste S, Benatti TR, Orsi MR, Risterucci AM, et al (2006). Isolation and characterization of microsatellite loci from a commercial cultivar of Musa acuminata. Mol. Ecol. Notes 6: 303-306. Cruz I (2007). A Broca da Cana-de-Açúcar, Diatraea saccharalis, em Milho, no Brasil, Circular Técnica, Embrapa. Available at [] Dinardo-Miranda LL (2008). Pragas. In: Cana-de-açúcar. (Dinardo-Miranda LL, Vasconcelos ACM, Landell MGA, eds.). Instituto Agronômico, Campinas, 349-404. (in Portuguese). Dinardo-Miranda LL, Fracasso JV, Perecin D, et al (2011). Spatial variability of populations of Diatraea saccharalis in sugarcane fields and suggestion of sampling method. Bragantia 70: 577-585. Dinardo-Miranda LL, Fracasso JV, Costa VP, Lopes DOT, et al (2014). Dispersal of Cotesia flavipes in sugarcane field and implications for parasitoid releases. Bragantia 73: 163-170. Elias J, Dorn S, Mazzi D, et al (2010). Inbreeding in a natural population of the gregarious parasitoid wasp Cotesia glomerata. Mol. Ecol. 19: 2336-2345. Goudet J (1994). FSTAT, a program for IBM PC compatibles to calculate Weir and Cockerham's (1984) estimators of F-statistics. (Version 1.2). Available at []. Goudet J (2002). FSTAT, a program to estimate and test gene diversities and fixation indices. (Version 2.9.3). Available at []. IBGE (2013). Instituto Brasileiro de Geografia e Estatística. Available at []. Accessed December 15, 2014. (in Portuguese). Jensen MK, Kester KM, Kankare M, Brown BL, et al (2002). Characterization of microsatellite loci in the parasitoid, Cotesia congregata (Say) (Hymenoptera: Braconidae). Mol. Ecol. Notes 2: 346-348. Kankare M, Jensen MK, Kester KM, Saccheri IJ, et al (2004). Characterization of microsatellite loci in two primary parasitoids of the butterfly Melitaea cinxia, Cotesia melitaearum and Hyposoter horticola (Hymenoptera). Mol. Ecol. Notes 4: 231-233. Kimani-Njogu SW, Overholt WA, Woolley JB, Omwega CO, et al (1998). Electrophoretic and phylogenetic analyses of selected allopatric populations of the Cotesia flavipes complex (Hymenoptera: Braconidae), parasitoids of cereal stemborers. Biochem. Syst. Ecol. 26: 285-296. Lima LHC, Campos L, Moretzsohn MC, Návia D, et al (2002). Genetic diversity of Bemisia tabaci (Genn.) Populations in Brazil revealed by RAPD markers. Genet. Mol. Biol. 25: 217-223. Lopes DA, Cantagalli LB and Stuchi ALP Barateiro, Mangolin CA, et al. (2014). Population genetics of the sugarcane borer Diatraea saccharalis (Fabr.) (Lepidoptera: Crambidae). Acta Sci. Agron. Maringá. 36: 189-194. Martins WS, Lucas DCS, Neves KFS, Bertioli DJ, et al (2009). WebSat--a web software for microsatellite marker development. Bioinformation 3: 282-283. Milgroom MG, Peever TL, et al (2003). Population biology of plant pathogens. Plant Dis. 87: 608-617. Miller MP (1997). Tools for Population Genetic Analysis (TFPGA), Version 1.3: A Windows Program for Analysis of Allozyme and Molecular Population Genetic Data, University of Northem Arizona, Flagstaff, Ariz, USA. Muirhead KA, Murphy NP, Sallam MN, Donnellan SC, et al (2006). Mitochondrial DNA phylogeography of the Cotesia flavipes complex of parasitic wasps (Hymenoptera: Braconidae). Ann. Soc. Entomol. Fr. 42: 309-318. Muirhead KA, Murphy NP, Sallam N, Donnellan SC, et al (2012). Phylogenetics and genetic diversity of the Cotesia flavipes complex of parasitoid wasps (Hymenoptera: Braconidae), biological control agents of lepidopteran stemborers. Mol. Phylogenet. Evol. 63: 904-914. Nagy S, Poczai P, Cernák I, Gorji AM, et al (2012). PICcalc: an online program to calculate polymorphic information content for molecular genetic studies. Biochem. Genet. 50: 670-672. Nei M, et al (1972). Genetic distance between populations. Am. Nat. 106: 283-292. Nei M, et al (1973). Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA 70: 3321-3323. Nei M (1987). Genes in populations. In: Molecular Evolutionary Genetics. Columbia University Press, New York, 164-165. Omwega CO, Overholt WA, et al (1996). Genetic changes occurring during laboratory rearing of Cotesia flaripes Cameron (Hymenoptera: Braconidae), an imported parasitoid for the control of gramineous stem borers in Africa. Afr. Entomol. 4: 231-237. Oosterhout CV, Hutchinson WF, Wills DPM, Shipley P, et al (2004). MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4: 535-538. Polaszek A, Walker AK, et al (1991). The Cotesia flavipes species-complex; parasitoids of cereal stem borers in the tropics. Redia (Firenze) 74: 335-341. Rohlf FJ (2000). NTSYS-pc: Numerical taxonomy and multivariate analysis system, version 2.1. Exeter Software Setauket, New York. Sallam MN, Overholt WA, Kairu E, et al (2001). Dispersal of the exotic parasitoid Cotesia flavipes in a new ecosystem. Entomol. Exp. Appl. 98: 211-217. Untergasser A, Nijveen H, Rao X, Bisseling T, et al (2007). Primer3Plus, an enhanced web interface to Primer3. Nucleic Acids Res. 35: W71-4. Veiga ACP, Vacari AM, Volpe HXL, Laurentis VL, et al (2013). Quality control of Cotesia flavipes (Cameron) (Hymenoptera: Braconidae) from different Brazilian bio-factories. Biocontrol Sci. Technol. 23: 665-673. Volpe HXL (2009). Distribuição espacial do parasitismo de Cotesia flavipes (Cameron, 1891) (Hymenoptera: Braconidae), em cana-de-açúcar. Master’s thesis, UNESP, Jaboticabal. Available at [] (in Portuguese). Volpe HXL, Barbosa JC, Viel SR, Goulart RM, et al (2014). Determination of method to evaluate parasitism and cover area for studies on Cotesia flavipes in sugarcane. Afr. J. Agric. Res. 9: 436-447. Weising K, Nybom H, Wolff K and Meyer W (1995). DNA Fingerprinting in Plants and Fungi. CRC Press, Boca Raton. Wright S, et al (1951). The genetical structure of populations. Ann. Eugen. 15: 323-354.    
D. M. Melotto-Passarin, Tambarussi, E. V., Dressano, K., De Martin, V. F., and Carrer, H., Characterization of chloroplast DNA microsatellites from Saccharum spp and related species, vol. 10, pp. 2024-2033, 2011.
Asano T, Tsudzuki T, Takahashi S, Shimada H, et al. (2004). Complete nucleotide sequence of the sugarcane (Saccharum officinarum) chloroplast genome: a comparative analysis of four monocot chloroplast genomes. DNA Res. 11: 93-99. PMid:15449542 Bortiri E, Coleman-Derr D, Lazo GR, Anderson OD, et al. (2008). The complete chloroplast genome sequence of Brachypodium distachyon: sequence comparison and phylogenetic analysis of eight grass plastomes. BMC Res. Notes 1: 61. PMid:18710514    PMCid:2527572 Bremer K (2002). Gondwanan evolution of the grass alliance of families (Poales). Evolution 56: 1374-1387. PMid:12206239 Calsa JT, Carraro DM, Benatti MR, Barbosa AC, et al. (2004). Structural features and transcript-editing analysis of sugarcane (Saccharum officinarum L.) chloroplast genome. Curr. Genet. 46: 366-373. PMid:15526204 Cardle L, Ramsay L, Milbourne D, Macaulay M, et al. (2000). Computational and experimental characterization of physically clustered simple sequence repeats in plants. Genetics 156: 847-854. PMid:11014830    PMCid:1461288 Ceresini PC, Silva CLSP, Missio RF, Souza EC, et al. (2005). Satellypus: analysis and database of microsatellites from ESTs of Eucalyptus. Genet. Mol. Biol. 28: 589-600. Clegg MT (1993). Chloroplast gene sequences and the study of plant evolution. Proc. Natl. Acad. Sci. U. S. A. 90: 363-367. Daniell H, Lee SB, Grevich J, Saski C, et al. (2006). Complete chloroplast genome sequences of Solanum bulbocastanum, Solanum lycopersicum and comparative analyses with other Solanaceae genomes. Theor. Appl. Genet. 112: 1503-1518. PMid:16575560 Dechering KJ, Cuelenaere K, Konings RN and Leunissen JA (1998). Distinct frequency-distributions of homopolymeric DNA tracts in different genomes. Nucleic Acids Res. 26: 4056-4062. PMid:9705519    PMCid:147789 Dick CW and Heuertz M (2008). The complex biogeographic history of a widespread tropical tree species. Evolution 62: 2760-2774. PMid:18764917 Ellegren H (2004). Microsatellites: simple sequences with complex evolution. Nat. Rev. Genet. 5: 435-445. PMid:15153996 Felsenstein J (1985). Confidence limits on phytogenies: an approach using the bootstrap. Evolution 39: 783. Goulding SE, Olmstead RG, Morden CW and Wolfe KH (1996). Ebb and flow of the chloroplast inverted repeat. Mol. Gen. Genet. 252: 195-206. Grass Phylogeny Working Group (2001). Phylogeny and subfamilial classification of the grasses (Poaceae). Ann. Miss. Bot. Gard. 88: 373-457. Kalendar R (2008). Software FastPCR: a PCR primer and Probe Design and Repeat Sequence Searching Software with Additional Tools for the Manipulation and Analysis of DNA and Protein. Available at []. Accessed February 2, 2010. Kelchner SA (2000). The evolution of non-coding chloroplast DNA and its application in plant systematics. Ann. Miss. Bot. Gard. 87: 482-498. Levinson G and Gutman GA (1987). Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol. Biol. Evol. 4: 203-221. PMid:3328815 Lovett ST (2004). Encoded errors: mutations and rearrangements mediated by misalignment at repetitive DNA sequences. Mol. Microbiol. 52: 1243-1253. PMid:15165229 Marshall HD, Newton C and Ritland K (2001). Sequence-repeat polymorphisms exhibit the signature of recombination in lodgepole pine chloroplast DNA. Mol. Biol. Evol. 18: 2136-2138. PMid:11606712 Metzgar D, Bytof J and Wills C (2000). Selection against frameshift mutations limits microsatellite expansion in coding DNA. Genome Res. 10: 72-80. PMid:10645952    PMCid:310501 Moxon ER and Wills C (1999). DNA microsatellites: agents of evolution? Sci. Am. 280: 94-99. PMid:9891422 Nei M and Kumar Ed S (2000). Molecular Evolution and Phylogenetics. Oxford University Press, New York. Nishikawa T, Vaughan DA and Kadowaki K (2005). Phylogenetic analysis of Oryza species, based on simple sequence repeats and their flanking nucleotide sequences from the mitochondrial and chloroplast genomes. Theor. Appl. Genet. 110: 696-705. PMid:15650813 Palmieri DA, Novelli VM, Bastianel M, Cristofani-Yaly M, et al. (2007). Frequency and distribution of microsatellites from ESTs of Citrus. Genet. Mol. Biol. 30: 1009-1018. Powell W, Machray GC and Provan J (1996). Polymorphism revealed by simple sequence repeats. Trends Plant Sci. 1: 215-222. Rajendrakumar P, Biswal AK, Balachandran SM, Srinivasarao K, et al. (2007). Simple sequence repeats in organellar genomes of rice: frequency and distribution in genic and intergenic regions. Bioinformatics 23: 1-4. PMid:17077096 Raubeson LA, Peery R, Chumley TW, Dziubek C, et al. (2007). Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus. BMC Genomics 8: 174. PMid:17573971    PMCid:1925096 Rose O and Falush D (1998). A threshold size for microsatellite expansion. Mol. Biol. Evol. 15: 613-615. PMid:9580993 Saski C, Lee SB, Daniell H, Wood TC, et al. (2005). Complete chloroplast genome sequence of Glycine max and comparative analyses with other legume genomes. Plant Mol. Biol. 59: 309–322. PMid:16247559 Silva JAF (2001). Preliminary analysis of microsatellite markers derived from sugarcane expressed sequence tags (ESTs). Genet. Mol. Biol. 24: 155-159. Subramanian S, Mishra RK and Singh L (2003). Genome-wide analysis of microsatellite repeats in humans: their abundance and density in specific genomic regions. Genome Biol. 4: R13. PMid:12620123    PMCid:151303 Tambarussi EV, Melotto-Passarin DM, Barbosa AL, Brigati JB, et al. (2009). In silico analysis of simple sequence repeats from chloroplast genomes of Solanaceae species. Crop Breed. Appl. Biotech. 9: 344-352. Tamura K, Dudley J, Nei M and Kumar S (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24: 1596-1599. PMid:17488738 Thompson JD, Higgins DG and Gibson TJ (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680. PMid:7984417    PMCid:308517 Timme R, Kuehl EJ, Boore JL and Jansen RK (2007). A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats. Am. J. Bot. 94: 302-312. PMid:21636403 Tóth G, Gaspari Z and Jurka J (2000). Microsatellites in different eukaryotic genomes: survey and analysis. Genome Res. 10: 967-981. PMid:10899146    PMCid:310925 Varshney RK, Thiel T, Stein N, Langridge P, et al. (2002). In silico analysis on frequency and distribution of microsatellites in ESTs of some cereal species. Cell Mol. Biol. Lett. 7: 537-546. PMid:12378259 Wu YQ and Huang Y (2007). An SSR genetic map of Sorghum bicolor (L.) Moench and its comparison to a published genetic map. Genome 50: 84-89. PMid:17546074