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2012
H. S. An, Lee, J. W., and Park, J. Y., Population genetics of the Pacific abalone (Haliotis discus hannai) in Korea inferred from microsatellite marker analysis, vol. 11, pp. 3904-3922, 2012.
An HS, Jee YJ, Min KS, Kim BL, et al. (2005). Phylogenetic analysis of six species of Pacific abalone (Haliotidae) based on DNA sequences of 16s rRNA and cytochrome c oxidase subunit I mitochondrial genes. Mar. Biotechnol. 7: 373- 380. http://dx.doi.org/10.1007/s10126-004-4405-2 PMid:15976933   An HS, Hong SW, Kim EM, Lee JH, et al. (2010a). Comparative genetic diversity of wild and released populations of Pacific abalone Haliotis discus discus in Jeju, Korea, based on cross-species microsatellite markers including two novel loci. Anim. Cells Syst. 14: 305-313. http://dx.doi.org/10.1080/19768354.2010.525813   An HS, Lee JH, Dong CM, Noh JK, et al. (2010b). New polymorphic microsatellite markers in Pacific abalone Haliotis discus hannai and their application to genetic characterization of wild and aquaculture populations. Genes Genomics 32: 413-418. http://dx.doi.org/10.1007/s13258-010-0037-2   An HS, Kim EM, Lee JW, Dong CM, et al. (2011a). Novel polymorphic microsatellite loci for the Korean black scraper (Thamnaconus modestus), and their application to the genetic characterization of wild and farmed populations. Int. J. Mol. Sci. 12: 4104-4119. http://dx.doi.org/10.3390/ijms12064104 PMid:21747727 PMCid:3131611   An HS, Lee JW, Kim HC and Myeong JI (2011b). Genetic characterization of five hatchery populations of the pacific abalone (Haliotis discus hannai) using microsatellite markers. Int. J. Mol. Sci. 12: 4836-4849. http://dx.doi.org/10.3390/ijms12084836 PMid:21954328 PMCid:3179135   Antao T, Lopes A, Lopes RJ, Beja-Pereira A, et al. (2008). LOSITAN: a workbench to detect molecular adaptation based on a FST-outlier method. BMC Bioinformatics 9: 323. http://dx.doi.org/10.1186/1471-2105-9-323 PMid:18662398 PMCid:2515854   Cavalli-Sforza LL and Edwards AWF (1967). Phylogenetic analysis: models and estimation procedures. Evolution 21: 550-570. http://dx.doi.org/10.2307/2406616   Cornuet JM and Luikart G (1996). Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144: 2001-2014. PMid:8978083 PMCid:1207747   DeWoody JA and Avise JC (2000). Microsatellite variation in marine, freshwater and anadromous fishes compared with other animals. J. Fish Biol. 56: 461-473. http://dx.doi.org/10.1111/j.1095-8649.2000.tb00748.x   Excoffier L, Smouse PE and Quattro JM (1992). Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491. PMid:1644282 PMCid:1205020   Excoffier L, Laval G and Schneider S (2005). Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1: 47-50. PMCid:2658868   FAO (1993). Report of the Expert Consultation on Utilization and Conservation of Aquatic Genetic Resources. FAO Fisheries Report 491, Food and Agriculture Organization of the United Nations, Rome.   Fisheries Information Service (2009). Annual Statistics of Fisheries Production. By MIFAFF-Ministry for Food, Agriculture, Forestry and Fisheries of Korea. Available at [http://www.fips.go.kr]. Accessed March 1, 2012.   Han HS, Nam BH, Kang JH, Kim YK, et al. (2012). Genetic variation in wild and cultured populations of the sea squirt Halocynthia roretzi inferred from microsatellite DNA analysis. Fish. Aquat. Sci. 15: 151-155.   Hara M and Sekino M (2005). Genetic difference between Ezo-awabi Haliotis discus hannai and Kuro-awabi H. discus discus populations: Microsatellite-based population analysis in Japanese abalone. Fish. Sci. 71: 754-766. http://dx.doi.org/10.1111/j.1444-2906.2005.01025.x   Hara M and Sekino M (2007). Genetic differences between hatchery stocks and natural populations in Pacific abalone (Haliotis discus) estimated using microsatellite dNA markers. Mar. Biotechnol. 9: 74-81. http://dx.doi.org/10.1007/s10126-006-6060-2 PMid:17294314   Hilborn R, Branch TE, Ernst B, Magnusson A, et al. (2003). State of the worlds fisheries. Ann. Rev. Environ. Resour. 28: 359-399. http://dx.doi.org/10.1146/annurev.energy.28.050302.105509   Hurt C and Phillip H (2004). Conservation genetics in aquatic species: general approaches and case studies in fishes and spring snails of arid lands. Aquat. Sci. 66: 402-413. http://dx.doi.org/10.1007/s00027-004-0726-5   Ichikawa H and Beardsley RC (2002). The current system in the Yellow and East China Seas. J. Oceanog. 58: 77-92. http://dx.doi.org/10.1023/A:1015876701363   Karaiskou N, Triantafyllidis A, Katsares V, Abatzopoulos TJ, et al. (2009). Microsatellite variability of wild and farmed populations of Sparus aurata. J. Fish Biol. 74: 1816-1825. http://dx.doi.org/10.1111/j.1095-8649.2009.02186.x PMid:20735673   Kim M-J, An HS and Choi K-H (2010a). Genetic characteristics of Pacific cod populations in Korea based on microsatellite markers. Fish. Sci. 76: 595-603. http://dx.doi.org/10.1007/s12562-010-0249-z   Kim W-J, Kim KK, Han HS, Nam BH, et al. (2010b). Population structure of the olive flounder (Paralichthys olivaceus) in Korea inferred from microsatellite marker analysis. J. Fish Biol. 76: 1958-1971. http://dx.doi.org/10.1111/j.1095-8649.2010.02638.x PMid:20557649   Li Q, Park C and Kijima A (2002). Isolation and characterization of microsatellite loci in the Pacific abalone, Haliotis discus hannai. J. Shellfish Res. 21: 811-815.   Li Q, Park C, Endo T and Kijima A (2004). Loss of genetic variation at microsatellite loci in hatchery strains of the Pacific abalone (Haliotis discus hannai). Aquaculture 235: 207-222. http://dx.doi.org/10.1016/j.aquaculture.2003.12.018   Li Q, Shu J, Yu R and Tian C (2007). Genetic variability of cultured populations of the Pacific abalone (Haliotis discus hannai Ino) in China based on microsatellites. Aquacult. Res. 38: 981-990. http://dx.doi.org/10.1111/j.1365-2109.2007.01764.x   Liu F, Xia JH, Bai ZY, Fu JJ, et al. (2009). High genetic diversity and substantial population differentiation in grass carp (Ctenopharyngodon idella) revealed by microsatellite analysis. Aquaculture 297: 51-56. http://dx.doi.org/10.1016/j.aquaculture.2009.09.008   Marie AD, Bernatchez L and Garant D (2010). Loss of genetic integrity correlates with stocking intensity in brook charr (Salvelinus fontinalis). Mol. Ecol. 19: 2025-2037. http://dx.doi.org/10.1111/j.1365-294X.2010.04628.x PMid:20406382   Meier K, Hansen MM, Bekkevold D, Skaala Ø, et al. (2011). An assessment of the spatial scale of local adaptation in brown trout (Salmo trutta L.): footprints of selection at microsatellite DNA loci. Heredity 106: 488-499. http://dx.doi.org/10.1038/hdy.2010.164 PMid:21224872 PMCid:3131969   Miller KJ, Maynard BT and Mundy CN (2009). Genetic diversity and gene flow in collapsed and healthy abalone fisheries. Mol. Ecol. 18: 200-211. http://dx.doi.org/10.1111/j.1365-294X.2008.04019.x PMid:19076275   Mjolnerod IB, Refseth UH, Karlsen E, Balstad T, et al. (1997). Genetic differences between two wild and one farmed population of Atlantic salmon (Salmo salar) revealed by three classes of genetic markers. Hereditas 127: 239-248. http://dx.doi.org/10.1111/j.1601-5223.1997.t01-1-00239.x   Norris AT, Bradley DG and Cunningham EP (1999). Microsatellite genetic variation between and within farmed and wild Atlantic salmon (Salmo salar) populations. Aquaculture 180: 247-264. http://dx.doi.org/10.1016/S0044-8486(99)00212-4   Pritchard JK, Stephens M and Donnelly P (2000). Inference of population structure using multilocus genotype data. Genetics 155: 945-959. PMid:10835412 PMCid:1461096   Reiss H, Hoarau G, Dickey-Collas M and Wolff WJ (2009). Genetic population structure of marine fish: mismatch between biological and fisheries management units. Fish Fish. 10: 361-395. http://dx.doi.org/10.1111/j.1467-2979.2008.00324.x   Rice WR (1989). Analyzing tables of statistical tests. Evolution 43: 223-225. http://dx.doi.org/10.2307/2409177   Sekino M and Hara M (2001). Microsatellite loci in Pacific abalone, Haliotis discus discus (Mollusca, Gastropoda, Haliotidae). Mol. Ecol. Notes 1: 8-10. http://dx.doi.org/10.1046/j.1471-8278.2000.00004.x   Sekino M, Saido T, Fujita T, Kobayashi T, et al. (2005). Microsatellite DNA markers of Ezo abalone (Haliotis discus hannai): A preliminary assessment of natural populations sampled from heavily stocked areas. Aquaculture 243: 33-47. http://dx.doi.org/10.1016/j.aquaculture.2004.10.013   van Oosterhout C, Hutchinson WF, Wills DPM and Shipley P (2004). MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4: 535-538. http://dx.doi.org/10.1111/j.1471-8286.2004.00684.x   Weir BS and Cockerham CC (1984). Estimating F-statistics for the analysis of population structure. Evolution 38: 1358- 1370. http://dx.doi.org/10.2307/2408641   Wilcoxon F (1945). Individual comparisons by ranking methods. Biometrics Bull. 1: 80-83. http://dx.doi.org/10.2307/3001968   Yu H and Li Q (2007). Genetic variation of wild and hatchery populations of the Pacific oyster Crassostrea gigas assessed by microsatellite markers. J. Genet. Genomics 34: 1114-1122. http://dx.doi.org/10.1016/S1673-8527(07)60127-1   Zhan AB, Bao ZM, Hui M, Wang ML, et al. (2007). Inheritance pattern of EST-SSRs in self-fertilized larvae of the bay scallop Argopecten irradians. Ann. Zool. Fenn. 44: 259-268.
2011
H. S. An, Kim, E. - M., Lee, J. - H., Noh, J. K., An, C. M., Yoon, S. J., Park, K. D., and Myeong, J. - I., Population genetic structure of wild and hatchery black rockfish Sebastes inermis in Korea, assessed using cross-species microsatellite markers, vol. 10, pp. 2492-2504, 2011.
Alarcón JA, Magoulas A, Georgakopoulos A and Zouros E (2004). Genetic comparison of wild and cultivated European populations of the gilthead sea bream (Sparus aurata). Aquaculture 230: 65-80. http://dx.doi.org/10.1016/S0044-8486(03)00434-4 Allendorf FW and Phelps N (1980). Loss of genetic variation in a hatchery stock of cutthroat trout. Trans. Am. Fish. Soc. 109: 537-543. http://dx.doi.org/10.1577/1548-8659(1980)109<537:LOGVIA>2.0.CO;2 An HY, Park JY, Kim MJ and Lee EY (2009). Isolation and characterization of microsatellite markers for the heavily exploited rockfish Sebastes schlegeli, and cross-species amplification in four related Sebastes spp. Conserv. Genet. 10: 1969-1972. http://dx.doi.org/10.1007/s10592-009-9870-8 Buonaccorsi VP, Kimbrell CA, Lynn EA and Vetter RD (2002). Population structure of copper rockfish (Sebastes caurinus) reflects postglacial colonization and contemporary patterns of larval dispersal. Can. J. Fish. Aquat. Sci. 59: 1374-1384. http://dx.doi.org/10.1139/f02-101 Buonaccorsi VP, Westerman M, Stannard J and Kimbrell C (2004). Molecular genetic structure suggests limited larval dispersal in grass rockfish, Sebastes rastrelliger. Mar. Biol. 145: 779-788. Cavalli-Sforza LL and Edwards AW (1967). Phylogenetic analysis. Models and estimation procedures. Am. J. Hum. Genet. 19: 233-257. PMid:6026583    PMCid:1706274 Coughlan JP, Imsland AK, Galvin PT and Fitzgerald RD (1998). Microsatellite DNA variation in wild populations and farmed strains of turbot from Ireland and Norway: a preliminary study. J. Fish Biol. 52: 916-922. http://dx.doi.org/10.1111/j.1095-8649.1998.tb00592.x DeWoody JA and Avise JC (2000). Microsatellite variation in marine, freshwater and anadromous fishes compared with other animals. J. Fish Biol. 56: 461-473. http://dx.doi.org/10.1111/j.1095-8649.2000.tb00748.x El Mousadik A and Petit RJ (1996). High level of genetic differentiation for allelic richness among populations of the argan tree (Argania spinosa (L.) Skeels) endemic to Morocco. Theor. Appl. Genet. 92: 832-839. http://dx.doi.org/10.1007/BF00221895 Excoffier L, Smouse PE and Quattro JM (1992). Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491. PMid:1644282    PMCid:1205020 Excoffier L, Laval G and Schneider S (2005). Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1: 47-50. Gilbert-Horvath EA, Larson RJ and Garza JC (2006). Temporal recruitment patterns and gene flow in kelp rockfish (Sebastes atrovirens). Mol. Ecol. 15: 3801-3815. http://dx.doi.org/10.1111/j.1365-294X.2006.03033.x PMid:17032275 Goudet J (1995). FSTAT (version 1.2): a computer program to calculate F-statistics. J. Hered. 86: 485-486. Hedgecock D and Sly F (1990). Genetic drift and effective population sizes of hatchery propagated stocks of the Pacific oyster, Crassostrea gigas. Aquaculture 88: 21-38. http://dx.doi.org/10.1016/0044-8486(90)90316-F Higuchi M and Kato K (2002). Sequence variability in the mitochondrial DNA control region of five Sebastes species. Fish. Sci. 68: 643-650. http://dx.doi.org/10.1046/j.1444-2906.2002.00472.x Hyde JR and Vetter RD (2007). The origin, evolution, and diversification of rockfishes of the genus Sebastes (Cuvier). Mol. Phylogenet. Evol. 44: 790-811. http://dx.doi.org/10.1016/j.ympev.2006.12.026 PMid:17320419 Jørgensen HB, Hansen MM, Bekkevold D, Ruzzante DE, et al. (2005). Marine landscapes and population genetic structure of herring (Clupea harengus L.) in the Baltic Sea. Mol. Ecol. 14: 3219-3234. http://dx.doi.org/10.1111/j.1365-294X.2005.02658.x PMid:16101787 Karaiskou N, Triantafyllidis A, Katsares V, Abatzopoulos TJ, et al. (2009). Microsatellite variability of wild and farmed populations of Sparus aurata. J. Fish Biol. 74: 1816-1825. http://dx.doi.org/10.1111/j.1095-8649.2009.02186.x PMid:20735673 Knutsen H, Jorde PE, Andre C and Stenseth NC (2003). Fine-scaled geographical population structuring in a highly mobile marine species: the Atlantic cod. Mol. Ecol. 12: 385-394. http://dx.doi.org/10.1046/j.1365-294X.2003.01750.x PMid:12535089 Langella O (2007). Populations 1.2.30: Population Genetic Software (Individuals or Populations Distances, Phylogenetic Trees). Available at [http://www.bioinformatics.org/%E2%88%BCtryphon/%20populations/]. Accessed April 21, 2009. Liu Y, Chen S and Li B (2005). Assessing the genetic structure of three Japanese flounder (Paralichthys olivaceus) stocks by microsatellite markers. Aquaculture 243: 103-111. http://dx.doi.org/10.1016/j.aquaculture.2004.10.024 Nakabo T (2000). Scorpaenidae. In: Fishes of Japan with Pictorial Keys to the Species. 2nd edn. Tokai University Press, Tokyo, 565-595 and 1524-1528. Nei M (1987). Molecular Evolutionary Genetics. Columbia University Press, New York. Nielsen EE, Hansen MM, Ruzzante DE, Meldrup D, et al. (2003). Evidence of a hybrid-zone in Atlantic cod (Gadus morhua) in the Baltic and the Danish Belt Sea revealed by individual admixture analysis. Mol. Ecol. 12: 1497-1508. http://dx.doi.org/10.1046/j.1365-294X.2003.01819.x PMid:12755878 Norris AT, Bradley DG and Cunningham EP (1999). Microsatellite genetic variation between and within farmed and wild Atlantic salmon (Salmo salar) populations. Aquaculture 180: 247-264. http://dx.doi.org/10.1016/S0044-8486(99)00212-4 Reiss H, Hoarau G, Dickey-Collas M and Wolff WJ (2009). Genetic population structure of marine fish: mismatch between biological and fisheries management units. Fish Fish. 10: 361-395. http://dx.doi.org/10.1111/j.1467-2979.2008.00324.x Rice WR (1989). Analyzing tables of statistical tests. Evolution 43: 223-225. http://dx.doi.org/10.2307/2409177 Rocha-Olivares A, Leal-Navarro RA, Kimbrell C, Lynn EA, et al. (2003). Microsatellite variation in the Mexican rockfish Sebastes macdonaldi. Fish. Sci. 67: 451-460. Ryman N and Ståhl G (1980). Genetic changes in hatchery stocks of brown trout (Salmo trutta). Can. J. Fish. Aquat. Sci. 37: 82-87. http://dx.doi.org/10.1139/f80-008 Saitou N and Nei M (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425. PMid:3447015 Sekino M, Takagi N, Hara M and Takahashi H (2001). Analysis of microsatellite DNA polymorphisms in rockfish Sebastes thompsoni and application to population genetics studies. Mar. Biotechnol. 3: 45-52. http://dx.doi.org/10.1007/s101260000046 PMid:14961389 Sekino M, Hara M and Taniguchi N (2002). Loss of microsatellite and mitochondrial DNA variation in hatchery strains of Japanese flounder Paralichthys olivaceus. Aquaculture 213: 101-122. http://dx.doi.org/10.1016/S0044-8486(01)00885-7 Shikano T, Shimada Y and Suzuki H (2008). Comparison of genetic diversity at microsatellite loci and quantitative traits in hatchery populations of Japanese flounder Paralichthys olivaceus. J. Fish Biol. 72: 386-399. http://dx.doi.org/10.1111/j.1095-8649.2007.01702.x Skaala Ø, Høyheim B, Glover K and Dahle G (2004). Microsatellite analysis in domesticated and wild Atlantic salmon (Salmo salar L.): allelic diversity and identification of individuals. Aquaculture 240: 131-143. http://dx.doi.org/10.1016/j.aquaculture.2004.07.009 Utaga K and Taniuchi T (1999). Age and growth of the black rockfish Sebastes inermis in eastern Sagami Bay off Miura Peninsula, Central Japan. Fish. Sci. 65: 73-78. van Oosterhout C, Hutchinson WF, Wills DPM and Shipley P (2004). MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4: 535-538. http://dx.doi.org/10.1111/j.1471-8286.2004.00684.x Weir BS and Cockerham CC (1984). Estimating F-statistics for the analysis of population structure. Evolution 38: 1358- 1370. http://dx.doi.org/10.2307/2408641 Wimberger P, Burr J, Gray A, Lopez A, et al. (1999). Isolation and characterization of twelve microsatellite loci for rockfish (Sebastes). Mar. Biotechnol. 1: 311-315. http://dx.doi.org/10.1007/PL00011780 PMid:10384005