Publications
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“Microsatellites behaving badly: empirical evaluation of genotyping errors and subsequent impacts on population studies”, vol. 10, pp. 2534-2553, 2011.
, Anderson JD, Honeycutt RL, Gonzales RA, Gee KL, et al. (2002). Development of microsatellite DNA markers for the automated genetic characterization of white-tailed deer populations. J. Wildl. Manag. 66: 67-74.
http://dx.doi.org/10.2307/3802872
Bhebhe E, Kogi J, Holder DA, Arevalo E, et al. (1994). Caprine microsatellite dinucleotide repeat polymorphisms at the SR-CRSP-6, SR-CRSP-7, SR-CRSP-8, SR-CRSP-9 and SR-CRSP-10 loci. Anim. Genet. 25: 203.
http://dx.doi.org/10.1111/j.1365-2052.1994.tb00125.x
Bishop MD, Kappes SM, Keele JW, Stone RT, et al. (1994). A genetic linkage map for cattle. Genetics 136: 619-639.
PMid:7908653 PMCid:1205813
Blanchong JA, Samuel MD, Scribner KT, Weckworth BV, et al. (2008). Landscape genetics and the spatial distribution of chronic wasting disease. Biol. Lett. 4: 130-133.
http://dx.doi.org/10.1098/rsbl.2007.0523
PMid:18077240 PMCid:2412942
Bonin A, Bellemain E, Bronken EP, Pompanon F, et al. (2004). How to track and assess genotyping errors in population genetics studies. Mol. Ecol. 13: 3261-3273.
http://dx.doi.org/10.1111/j.1365-294X.2004.02346.x
PMid:15487987
Bovo D, Rugge M and Shiao YH (1999). Origin of spurious multiple bands in the amplification of microsatellite sequences. Mol. Pathol. 52: 50-51.
http://dx.doi.org/10.1136/mp.52.1.50
PMid:10439841 PMCid:395672
Brookfield JF (1996). A simple new method for estimating null allele frequency from heterozygote deficiency. Mol. Ecol. 5: 453-455.
PMid:8688964
Buchanan FC, Littlejohn RP, Galloway SM and Crawford AM (1993). Microsatellites and associated repetitive elements in the sheep genome. Mamm. Genome 4: 258-264.
http://dx.doi.org/10.1007/BF00417432
PMid:8507980
Callen DF, Thompson AD, Shen Y, Phillips HA, et al. (1993). Incidence and origin of “null” alleles in the (AC)n microsatellite markers. Am. J. Hum. Genet. 52: 922-927.
PMid:8488841 PMCid:1682051
Chakraborty R, De Andrade M, Daiger SP and Budowle B (1992). Apparent heterozygote deficiencies observed in DNA typing data and their implications in forensic applications. Ann. Hum. Genet. 56: 45-57.
http://dx.doi.org/10.1111/j.1469-1809.1992.tb01128.x
PMid:1350188
Chapuis MP and Estoup A (2007). Microsatellite null alleles and estimation of population differentiation. Mol. Biol. Evol. 24: 621-631.
http://dx.doi.org/10.1093/molbev/msl191
PMid:17150975
Comer CE, Kilgo JC, D’Angelo GJ, Glenn TC, et al. (2005). Fine-scale genetic structure and social organization in female white-tailed deer. J. Wildl. Manag. 69: 332-344.
http://dx.doi.org/10.2193/0022-541X(2005)069<0332:FGSASO>2.0.CO;2
Coulon A, Guillot G, Cosson JF, Angibault JMA, et al. (2006). Genetic structure is influenced by landscape features: empirical evidence from a roe deer population. Mol. Ecol. 15: 1169-1679.
http://dx.doi.org/10.1111/j.1365-294X.2006.02861.x
PMid:16629819
Dakin EE and Avise JC (2004). Microsatellite null alleles in parentage analysis. Heredity 93: 504-509.
http://dx.doi.org/10.1038/sj.hdy.6800545
PMid:15292911
Degen B, Petit R and Kremer A (2001). SGS - Spatial Genetic Software: a computer program for analysis of spatial genetic and phenotypic structures of individuals and populations. J. Hered. 92: 447-449.
http://dx.doi.org/10.1093/jhered/92.5.447
PMid:11773257
Dempster AP, Laird NM and Rubin DB (1977). Maximum likelihood from incomplete data via the EM algorithm. J. Roy. Stat. Soc. 39: 1-38.
Dewoody J, Nason JD and Hipkins VD (2006). Mitigating scoring errors in microsatellite data from wild populations. Mol. Ecol. Notes 6: 951-957.
http://dx.doi.org/10.1111/j.1471-8286.2006.01449.x
DeYoung RW, Demarais S, Honeycutt RL, Gonzales RA, et al. (2003a). Evaluation of a DNA microsatellite panel useful for genetic exclusion studies in white-tailed deer. Wildl. Soc. Bull. 31: 220-232.
DeYoung RW, Demarais S, Honeycutt RL, Rooney AP, et al. (2003b). Genetic consequences of white-tailed deer (Odocoileus virginianus) restoration in Mississippi. Mol. Ecol. 12: 3237-3252.
http://dx.doi.org/10.1046/j.1365-294X.2003.01996.x
PMid:14629342
Epps CW, Palsboll PJ, Wehausen JD and Roderick GK (2005). Highways block gene flow and cause a rapid decline in genetic diversity of desert bighorn sheep. Ecol. Lett. 8: 1029-1038.
http://dx.doi.org/10.1111/j.1461-0248.2005.00804.x
Excoffier L, Laval G and Schneider S (2005). Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1: 47-50.
Fries R, Eggen A and Womack JE (1993). The bovine genome map. Mamm. Genome 4: 405-428.
http://dx.doi.org/10.1007/BF00296815
PMid:8104056
Gagneux P, Woodruff DS and Boesch C (1997). Furtive mating in female chimpanzees. Nature 387: 358-359.
http://dx.doi.org/10.1038/387358a0
PMid:9163418
Gagneux P, Woodruff DS and Boesch C (2001). Retraction: Furtive mating in female chimpanzees. Nature 414-508.
PMid:11473310
Grear DA, Samuel MD, Scribner KT, Weckworth BV, et al. (2010). Influence of genetic relatedness and spatial proximity on chronic wasting disease infection among female white-tailed deer. J. Appl. Ecol. 47: 532-540.
http://dx.doi.org/10.1111/j.1365-2664.2010.01813.x
Horváth MB, Martínez-Cruz B, Negro JJ, Kalmár L, et al. (2005). An overlooked DNA source for non-invasive genetic analysis in birds. J. Avian Biol. 36: 84-88.
http://dx.doi.org/10.1111/j.0908-8857.2005.03370.x
Kalinowski ST, Taper ML and Marshall TC (2007). Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Mol. Ecol. 16: 1099-1106.
http://dx.doi.org/10.1111/j.1365-294X.2007.03089.x
PMid:17305863
Kelly AC, Mateus-Pinilla NE, Douglas M, Brown W, et al. (2010). Utilizing disease surveillance to examine gene flow and dispersal in white-tailed deer. J. Appl. Ecol. 47: 1189-1198.
http://dx.doi.org/10.1111/j.1365-2664.2010.01868.x
Kirkpatrick BW (1992). Identification of a conserved microsatellite site in the porcine and bovine insulin-like growth factor-I gene 5’ flank. Anim. Genet. 23: 543-548.
http://dx.doi.org/10.1111/j.1365-2052.1992.tb00176.x
Lunn NJ, Paetkau D, Calvert W, Atkinson S, et al. (2000). Cub adoption by polar bears (Ursus maritimus): determining relatedness with microsatellite markers. J. Zool. 251: 23-30.
http://dx.doi.org/10.1111/j.1469-7998.2000.tb00589.x
McLean JE, Seamons TR, Dauer MB, Bentzen P, et al. (2008). Variation in reproductive success and effective number of breeders in a hatchery population of steelhead trout (Oncorhynchus mykiss): examination by microsatellite-based parentage analysis. Conserv. Genet. 9: 295-304.
http://dx.doi.org/10.1007/s10592-007-9340-0
Paetkau D (2003). An empirical exploration of data quality in DNA-based population inventories. Mol. Ecol. 12: 1375- 1387.
http://dx.doi.org/10.1046/j.1365-294X.2003.01820.x
PMid:12755868
Peakall R and Smouse PE (2006). Genalex 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol. Ecol. Notes 6: 288-295.
http://dx.doi.org/10.1111/j.1471-8286.2005.01155.x
Rao C (2001). Sample size considerations in genetic polymorphism studies. Hum. Hered. 52: 191-200.
http://dx.doi.org/10.1159/000053376
PMid:11713415
Rousset FCO (2008). GenePop’007: a complete re-implementation of the GenePop software for Windows and Linux. Mol. Ecol. Res. 8: 103-106.
http://dx.doi.org/10.1111/j.1471-8286.2007.01931.x
PMid:21585727
Ryman N and Palm S (2006). POWSIM: a computer program for assessing statistical power when testing for genetic differentiation. Mol. Ecol. Notes 6: 600-602.
http://dx.doi.org/10.1111/j.1471-8286.2006.01378.x
Storfer A (1996). Quantitative genetics: a promising approach for the assessment of genetic variation in endangered species. Trends Ecol. Evol. 11: 343-348.
http://dx.doi.org/10.1016/0169-5347(96)20051-5
Taberlet P, Griffin S, Goossens B, Questiau S, et al. (1996). Reliable genotyping of samples with very low DNA quantities using PCR. Nucleic Acids Res. 24: 3189-3194.
http://dx.doi.org/10.1093/nar/24.16.3189
PMid:8774899 PMCid:146079
Taberlet P, Waits LP and Luikart G (1999). Noninvasive genetic sampling: look before you leap. Trends Ecol. Evol. 14: 323-327.
http://dx.doi.org/10.1016/S0169-5347(99)01637-7
Talbot J, Haigh J and Plante Y (1996). A parentage evaluation test in North American elk (Wapiti) using microsatellites of ovine and bovine origin. Anim. Genet. 27: 117-119.
http://dx.doi.org/10.1111/j.1365-2052.1996.tb00480.x
Takezaki N and Nei M (1996). Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA. Genetics 144: 389-399.
PMid:8878702 PMCid:1207511
Van Oosterhout C, Hutchinson WF, Wills DPM and Shipley P (2004). Micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4: 535-538.
http://dx.doi.org/10.1111/j.1471-8286.2004.00684.x
Wagner AP, Creel S and Kalinowski ST (2006). Estimating relatedness and relationships using microsatellite loci with null alleles. Heredity 97: 336-345.
http://dx.doi.org/10.1038/sj.hdy.6800865
PMid:16868566
Wilson GA, Strobeck C, Wu L and Coffin JW (1997). Characterization of microsatellite loci in caribou Rangifer tarandus, and their use in other artiodactyls. Mol. Ecol. 6: 697-699.
http://dx.doi.org/10.1046/j.1365-294X.1997.00237.x
PMid:9226951
Woods JG, Paetkau D, Lewis D, McLellan BN, et al. (1999). Genetic tagging of free-ranging black and brown bears. Wildl. Soc. Bull. 27: 616-627.