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2011
A. C. Kelly, Mateus-Pinilla, N. E., Douglas, M., Douglas, M., Shelton, P., and Novakofski, J., Microsatellites behaving badly: empirical evaluation of genotyping errors and subsequent impacts on population studies, vol. 10, pp. 2534-2553, 2011.
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How to track and assess genotyping errors in population genetics studies. Mol. Ecol. 13: 3261-3273. http://dx.doi.org/10.1111/j.1365-294X.2004.02346.x PMid:15487987 Bovo D, Rugge M and Shiao YH (1999). Origin of spurious multiple bands in the amplification of microsatellite sequences. Mol. Pathol. 52: 50-51. http://dx.doi.org/10.1136/mp.52.1.50 PMid:10439841    PMCid:395672 Brookfield JF (1996). A simple new method for estimating null allele frequency from heterozygote deficiency. Mol. Ecol. 5: 453-455. PMid:8688964 Buchanan FC, Littlejohn RP, Galloway SM and Crawford AM (1993). Microsatellites and associated repetitive elements in the sheep genome. Mamm. Genome 4: 258-264. http://dx.doi.org/10.1007/BF00417432 PMid:8507980 Callen DF, Thompson AD, Shen Y, Phillips HA, et al. (1993). Incidence and origin of “null” alleles in the (AC)n microsatellite markers. Am. J. Hum. Genet. 52: 922-927. PMid:8488841    PMCid:1682051 Chakraborty R, De Andrade M, Daiger SP and Budowle B (1992). Apparent heterozygote deficiencies observed in DNA typing data and their implications in forensic applications. Ann. Hum. Genet. 56: 45-57. http://dx.doi.org/10.1111/j.1469-1809.1992.tb01128.x PMid:1350188 Chapuis MP and Estoup A (2007). Microsatellite null alleles and estimation of population differentiation. Mol. Biol. Evol. 24: 621-631. http://dx.doi.org/10.1093/molbev/msl191 PMid:17150975 Comer CE, Kilgo JC, D’Angelo GJ, Glenn TC, et al. (2005). Fine-scale genetic structure and social organization in female white-tailed deer. J. Wildl. Manag. 69: 332-344. http://dx.doi.org/10.2193/0022-541X(2005)069<0332:FGSASO>2.0.CO;2 Coulon A, Guillot G, Cosson JF, Angibault JMA, et al. (2006). Genetic structure is influenced by landscape features: empirical evidence from a roe deer population. Mol. Ecol. 15: 1169-1679. http://dx.doi.org/10.1111/j.1365-294X.2006.02861.x PMid:16629819 Dakin EE and Avise JC (2004). Microsatellite null alleles in parentage analysis. Heredity 93: 504-509. http://dx.doi.org/10.1038/sj.hdy.6800545 PMid:15292911 Degen B, Petit R and Kremer A (2001). SGS - Spatial Genetic Software: a computer program for analysis of spatial genetic and phenotypic structures of individuals and populations. J. Hered. 92: 447-449. http://dx.doi.org/10.1093/jhered/92.5.447 PMid:11773257 Dempster AP, Laird NM and Rubin DB (1977). Maximum likelihood from incomplete data via the EM algorithm. J. Roy. Stat. Soc. 39: 1-38. Dewoody J, Nason JD and Hipkins VD (2006). Mitigating scoring errors in microsatellite data from wild populations. Mol. Ecol. Notes 6: 951-957. http://dx.doi.org/10.1111/j.1471-8286.2006.01449.x DeYoung RW, Demarais S, Honeycutt RL, Gonzales RA, et al. (2003a). Evaluation of a DNA microsatellite panel useful for genetic exclusion studies in white-tailed deer. Wildl. Soc. Bull. 31: 220-232. DeYoung RW, Demarais S, Honeycutt RL, Rooney AP, et al. (2003b). Genetic consequences of white-tailed deer (Odocoileus virginianus) restoration in Mississippi. Mol. Ecol. 12: 3237-3252. http://dx.doi.org/10.1046/j.1365-294X.2003.01996.x PMid:14629342 Epps CW, Palsboll PJ, Wehausen JD and Roderick GK (2005). Highways block gene flow and cause a rapid decline in genetic diversity of desert bighorn sheep. Ecol. Lett. 8: 1029-1038. http://dx.doi.org/10.1111/j.1461-0248.2005.00804.x Excoffier L, Laval G and Schneider S (2005). Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1: 47-50. Fries R, Eggen A and Womack JE (1993). The bovine genome map. Mamm. Genome 4: 405-428. http://dx.doi.org/10.1007/BF00296815 PMid:8104056 Gagneux P, Woodruff DS and Boesch C (1997). Furtive mating in female chimpanzees. Nature 387: 358-359. http://dx.doi.org/10.1038/387358a0 PMid:9163418 Gagneux P, Woodruff DS and Boesch C (2001). Retraction: Furtive mating in female chimpanzees. Nature 414-508. PMid:11473310 Grear DA, Samuel MD, Scribner KT, Weckworth BV, et al. (2010). Influence of genetic relatedness and spatial proximity on chronic wasting disease infection among female white-tailed deer. J. Appl. Ecol. 47: 532-540. http://dx.doi.org/10.1111/j.1365-2664.2010.01813.x Horváth MB, Martínez-Cruz B, Negro JJ, Kalmár L, et al. (2005). An overlooked DNA source for non-invasive genetic analysis in birds. J. Avian Biol. 36: 84-88. http://dx.doi.org/10.1111/j.0908-8857.2005.03370.x Kalinowski ST, Taper ML and Marshall TC (2007). Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Mol. Ecol. 16: 1099-1106. http://dx.doi.org/10.1111/j.1365-294X.2007.03089.x PMid:17305863 Kelly AC, Mateus-Pinilla NE, Douglas M, Brown W, et al. (2010). Utilizing disease surveillance to examine gene flow and dispersal in white-tailed deer. J. Appl. Ecol. 47: 1189-1198. http://dx.doi.org/10.1111/j.1365-2664.2010.01868.x Kirkpatrick BW (1992). Identification of a conserved microsatellite site in the porcine and bovine insulin-like growth factor-I gene 5’ flank. Anim. Genet. 23: 543-548. http://dx.doi.org/10.1111/j.1365-2052.1992.tb00176.x Lunn NJ, Paetkau D, Calvert W, Atkinson S, et al. (2000). Cub adoption by polar bears (Ursus maritimus): determining relatedness with microsatellite markers. J. Zool. 251: 23-30. http://dx.doi.org/10.1111/j.1469-7998.2000.tb00589.x McLean JE, Seamons TR, Dauer MB, Bentzen P, et al. (2008). Variation in reproductive success and effective number of breeders in a hatchery population of steelhead trout (Oncorhynchus mykiss): examination by microsatellite-based parentage analysis. Conserv. Genet. 9: 295-304. http://dx.doi.org/10.1007/s10592-007-9340-0 Paetkau D (2003). An empirical exploration of data quality in DNA-based population inventories. Mol. Ecol. 12: 1375- 1387. http://dx.doi.org/10.1046/j.1365-294X.2003.01820.x PMid:12755868 Peakall R and Smouse PE (2006). Genalex 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol. Ecol. Notes 6: 288-295. http://dx.doi.org/10.1111/j.1471-8286.2005.01155.x Rao C (2001). Sample size considerations in genetic polymorphism studies. Hum. Hered. 52: 191-200. http://dx.doi.org/10.1159/000053376 PMid:11713415 Rousset FCO (2008). GenePop’007: a complete re-implementation of the GenePop software for Windows and Linux. Mol. Ecol. Res. 8: 103-106. http://dx.doi.org/10.1111/j.1471-8286.2007.01931.x PMid:21585727 Ryman N and Palm S (2006). POWSIM: a computer program for assessing statistical power when testing for genetic differentiation. Mol. Ecol. Notes 6: 600-602. http://dx.doi.org/10.1111/j.1471-8286.2006.01378.x Storfer A (1996). Quantitative genetics: a promising approach for the assessment of genetic variation in endangered species. Trends Ecol. Evol. 11: 343-348. http://dx.doi.org/10.1016/0169-5347(96)20051-5 Taberlet P, Griffin S, Goossens B, Questiau S, et al. (1996). Reliable genotyping of samples with very low DNA quantities using PCR. Nucleic Acids Res. 24: 3189-3194. http://dx.doi.org/10.1093/nar/24.16.3189 PMid:8774899    PMCid:146079 Taberlet P, Waits LP and Luikart G (1999). Noninvasive genetic sampling: look before you leap. Trends Ecol. Evol. 14: 323-327. http://dx.doi.org/10.1016/S0169-5347(99)01637-7 Talbot J, Haigh J and Plante Y (1996). A parentage evaluation test in North American elk (Wapiti) using microsatellites of ovine and bovine origin. Anim. Genet. 27: 117-119. http://dx.doi.org/10.1111/j.1365-2052.1996.tb00480.x Takezaki N and Nei M (1996). Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA. Genetics 144: 389-399. PMid:8878702    PMCid:1207511 Van Oosterhout C, Hutchinson WF, Wills DPM and Shipley P (2004). Micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4: 535-538. http://dx.doi.org/10.1111/j.1471-8286.2004.00684.x Wagner AP, Creel S and Kalinowski ST (2006). Estimating relatedness and relationships using microsatellite loci with null alleles. Heredity 97: 336-345. http://dx.doi.org/10.1038/sj.hdy.6800865 PMid:16868566 Wilson GA, Strobeck C, Wu L and Coffin JW (1997). Characterization of microsatellite loci in caribou Rangifer tarandus, and their use in other artiodactyls. Mol. Ecol. 6: 697-699. http://dx.doi.org/10.1046/j.1365-294X.1997.00237.x PMid:9226951 Woods JG, Paetkau D, Lewis D, McLellan BN, et al. (1999). Genetic tagging of free-ranging black and brown bears. Wildl. Soc. Bull. 27: 616-627.